Incidental Mutation 'IGL00816:Glycam1'
ID 13499
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Glycam1
Ensembl Gene ENSMUSG00000022491
Gene Name glycosylation dependent cell adhesion molecule 1
Synonyms Glycosylation-dependent cell adhesion molecule 1, Sgp50, GlyCAM 1, Sele ligand
Accession Numbers
Essential gene? Not available question?
Stock # IGL00816
Quality Score
Status
Chromosome 15
Chromosomal Location 103471186-103473508 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to G at 103472659 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Alanine at position 25 (D25A)
Ref Sequence ENSEMBL: ENSMUSP00000023134 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000023134] [ENSMUST00000228060] [ENSMUST00000228895]
AlphaFold Q02596
Predicted Effect probably damaging
Transcript: ENSMUST00000023134
AA Change: D25A

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000023134
Gene: ENSMUSG00000022491
AA Change: D25A

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
Pfam:GLYCAM-1 20 151 6e-62 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000226679
Predicted Effect probably damaging
Transcript: ENSMUST00000228060
AA Change: D25A

PolyPhen 2 Score 0.991 (Sensitivity: 0.71; Specificity: 0.97)
Predicted Effect possibly damaging
Transcript: ENSMUST00000228895
AA Change: D25A

PolyPhen 2 Score 0.742 (Sensitivity: 0.85; Specificity: 0.92)
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 36 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adgrv1 A T 13: 81,545,322 (GRCm39) D5654E probably benign Het
Alg6 A G 4: 99,630,598 (GRCm39) S146G probably null Het
Anks1 T C 17: 28,278,367 (GRCm39) probably null Het
Bcor T C X: 11,904,059 (GRCm39) I1662V probably damaging Het
Bzw1 T C 1: 58,438,213 (GRCm39) F98L probably damaging Het
Cdc14b A G 13: 64,353,217 (GRCm39) V453A probably benign Het
Copg1 G T 6: 87,870,880 (GRCm39) A228S possibly damaging Het
D1Pas1 A G 1: 186,701,609 (GRCm39) I513V possibly damaging Het
Efemp1 G A 11: 28,876,223 (GRCm39) V463M probably benign Het
Ep400 T A 5: 110,883,356 (GRCm39) probably benign Het
Faim G A 9: 98,874,218 (GRCm39) G15R probably damaging Het
Fgd3 A G 13: 49,418,262 (GRCm39) probably benign Het
Furin C A 7: 80,042,315 (GRCm39) G427W probably damaging Het
Gpr119 A G X: 47,763,047 (GRCm39) L30P probably damaging Het
Gria1 T A 11: 57,208,568 (GRCm39) M752K possibly damaging Het
Mcph1 C T 8: 18,682,413 (GRCm39) P517S possibly damaging Het
Mug1 T A 6: 121,859,597 (GRCm39) Y1199N probably damaging Het
Myt1 A G 2: 181,449,308 (GRCm39) D663G probably damaging Het
Ppp1r1c A T 2: 79,540,241 (GRCm39) probably null Het
Rab1a C T 11: 20,174,727 (GRCm39) T100M possibly damaging Het
Rfx6 A G 10: 51,554,501 (GRCm39) K114R probably benign Het
Rmdn1 T C 4: 19,595,119 (GRCm39) V177A probably benign Het
Setd5 T G 6: 113,088,375 (GRCm39) L168V probably damaging Het
Slc25a10 A T 11: 120,385,976 (GRCm39) probably benign Het
Slc38a7 A T 8: 96,570,748 (GRCm39) I252N probably damaging Het
Slit2 G A 5: 48,146,493 (GRCm39) E95K possibly damaging Het
Taar8c A T 10: 23,977,173 (GRCm39) I213N probably damaging Het
Tagln3 A T 16: 45,544,556 (GRCm39) C38* probably null Het
Tmcc2 C A 1: 132,308,436 (GRCm39) A153S probably benign Het
Tuft1 A T 3: 94,523,138 (GRCm39) I291N probably damaging Het
Vmn2r10 T A 5: 109,150,451 (GRCm39) M198L possibly damaging Het
Vps13d T A 4: 144,882,564 (GRCm39) M1004L probably benign Het
Wfdc3 T C 2: 164,584,945 (GRCm39) probably benign Het
Wfikkn2 G A 11: 94,128,921 (GRCm39) Q407* probably null Het
Zfp106 T C 2: 120,357,329 (GRCm39) I1189V probably benign Het
Zic2 T A 14: 122,715,971 (GRCm39) C364* probably null Het
Other mutations in Glycam1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02476:Glycam1 APN 15 103,471,307 (GRCm39) utr 3 prime probably benign
Posted On 2012-12-06