Incidental Mutation 'IGL00857:Sdr9c7'
ID |
13944 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Sdr9c7
|
Ensembl Gene |
ENSMUSG00000040127 |
Gene Name |
4short chain dehydrogenase/reductase family 9C, member 7 |
Synonyms |
Rdhs, 1810054F20Rik, Rdh20, Sdro, SDR-O |
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.074)
|
Stock # |
IGL00857
|
Quality Score |
|
Status
|
|
Chromosome |
10 |
Chromosomal Location |
127734404-127747630 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 127734728 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Glutamine to Arginine
at position 72
(Q72R)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000036628
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000047134]
|
AlphaFold |
Q8K3P0 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000047134
AA Change: Q72R
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
SMART Domains |
Protein: ENSMUSP00000036628 Gene: ENSMUSG00000040127 AA Change: Q72R
Domain | Start | End | E-Value | Type |
Pfam:adh_short
|
26 |
217 |
3.2e-41 |
PFAM |
Pfam:adh_short_C2
|
32 |
226 |
1.6e-8 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000149849
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000151614
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000155067
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein with similarity to the short-chain dehydrogenase/reductase (SDR) family but has not been shown to have retinoid or dehydrogenase activities. [provided by RefSeq, Apr 2010]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 32 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Acr |
A |
G |
15: 89,454,205 (GRCm39) |
T181A |
probably benign |
Het |
Anks3 |
T |
A |
16: 4,771,793 (GRCm39) |
H77L |
possibly damaging |
Het |
Cacna1d |
A |
T |
14: 30,072,638 (GRCm39) |
N112K |
possibly damaging |
Het |
Cd164 |
A |
G |
10: 41,404,691 (GRCm39) |
T150A |
probably benign |
Het |
Cfap57 |
C |
T |
4: 118,470,120 (GRCm39) |
|
probably null |
Het |
Cntnap2 |
C |
A |
6: 47,026,358 (GRCm39) |
N61K |
probably benign |
Het |
Cstdc1 |
A |
G |
2: 148,624,170 (GRCm39) |
D48G |
possibly damaging |
Het |
Cyp4f39 |
A |
G |
17: 32,708,631 (GRCm39) |
I393V |
probably benign |
Het |
Dcaf11 |
A |
T |
14: 55,798,742 (GRCm39) |
|
probably benign |
Het |
Defb7 |
G |
A |
8: 19,547,594 (GRCm39) |
R33Q |
possibly damaging |
Het |
Dmxl2 |
T |
C |
9: 54,283,604 (GRCm39) |
Y2743C |
probably benign |
Het |
Enpp2 |
A |
G |
15: 54,739,046 (GRCm39) |
|
probably null |
Het |
Fam135b |
T |
A |
15: 71,335,465 (GRCm39) |
E576D |
probably benign |
Het |
Gfpt1 |
T |
A |
6: 87,033,145 (GRCm39) |
N123K |
probably damaging |
Het |
Hnmt |
T |
C |
2: 23,893,795 (GRCm39) |
D233G |
probably benign |
Het |
Hsd3b2 |
T |
A |
3: 98,618,859 (GRCm39) |
E362V |
possibly damaging |
Het |
Hsdl2 |
T |
A |
4: 59,617,735 (GRCm39) |
N487K |
probably benign |
Het |
Hspa14 |
T |
C |
2: 3,503,796 (GRCm39) |
Y83C |
probably damaging |
Het |
Itm2b |
T |
C |
14: 73,602,056 (GRCm39) |
N214S |
probably benign |
Het |
Krt86 |
C |
T |
15: 101,371,741 (GRCm39) |
H104Y |
probably benign |
Het |
Myocd |
A |
T |
11: 65,069,662 (GRCm39) |
V726D |
possibly damaging |
Het |
Ncapg |
T |
A |
5: 45,833,927 (GRCm39) |
|
probably null |
Het |
Nrdc |
A |
T |
4: 108,911,199 (GRCm39) |
I774F |
probably damaging |
Het |
Pot1a |
T |
C |
6: 25,744,627 (GRCm39) |
I626V |
probably benign |
Het |
Prkab2 |
C |
T |
3: 97,569,659 (GRCm39) |
A75V |
possibly damaging |
Het |
Slc16a7 |
A |
C |
10: 125,066,803 (GRCm39) |
Y279D |
probably benign |
Het |
Slc8a1 |
T |
A |
17: 81,955,308 (GRCm39) |
T577S |
probably benign |
Het |
Slitrk3 |
G |
A |
3: 72,957,174 (GRCm39) |
L533F |
probably damaging |
Het |
Tent5a |
C |
A |
9: 85,206,806 (GRCm39) |
V331L |
possibly damaging |
Het |
Tmeff1 |
T |
C |
4: 48,610,435 (GRCm39) |
V102A |
probably damaging |
Het |
Ttn |
G |
A |
2: 76,583,099 (GRCm39) |
T22598I |
probably damaging |
Het |
Ube4a |
C |
A |
9: 44,843,684 (GRCm39) |
G977W |
probably damaging |
Het |
|
Other mutations in Sdr9c7 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00778:Sdr9c7
|
APN |
10 |
127,745,697 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02280:Sdr9c7
|
APN |
10 |
127,738,287 (GRCm39) |
splice site |
probably benign |
|
IGL02668:Sdr9c7
|
APN |
10 |
127,738,267 (GRCm39) |
missense |
probably damaging |
0.99 |
R0047:Sdr9c7
|
UTSW |
10 |
127,739,541 (GRCm39) |
missense |
probably benign |
|
R0047:Sdr9c7
|
UTSW |
10 |
127,739,541 (GRCm39) |
missense |
probably benign |
|
R0325:Sdr9c7
|
UTSW |
10 |
127,734,588 (GRCm39) |
missense |
probably benign |
0.00 |
R0440:Sdr9c7
|
UTSW |
10 |
127,734,822 (GRCm39) |
splice site |
probably benign |
|
R1720:Sdr9c7
|
UTSW |
10 |
127,738,127 (GRCm39) |
missense |
probably damaging |
1.00 |
R1936:Sdr9c7
|
UTSW |
10 |
127,739,503 (GRCm39) |
missense |
probably benign |
|
R4790:Sdr9c7
|
UTSW |
10 |
127,739,448 (GRCm39) |
missense |
possibly damaging |
0.77 |
R5145:Sdr9c7
|
UTSW |
10 |
127,738,259 (GRCm39) |
missense |
probably damaging |
1.00 |
R5241:Sdr9c7
|
UTSW |
10 |
127,745,659 (GRCm39) |
missense |
probably benign |
0.43 |
R6381:Sdr9c7
|
UTSW |
10 |
127,739,542 (GRCm39) |
missense |
probably benign |
0.25 |
R8024:Sdr9c7
|
UTSW |
10 |
127,734,751 (GRCm39) |
missense |
probably benign |
0.01 |
R8228:Sdr9c7
|
UTSW |
10 |
127,734,544 (GRCm39) |
missense |
possibly damaging |
0.94 |
R8939:Sdr9c7
|
UTSW |
10 |
127,734,776 (GRCm39) |
missense |
probably benign |
|
R9020:Sdr9c7
|
UTSW |
10 |
127,745,659 (GRCm39) |
missense |
possibly damaging |
0.94 |
Z1176:Sdr9c7
|
UTSW |
10 |
127,738,250 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Posted On |
2012-12-06 |