Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL00529:Snapc1'

14168

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Snapc1

Ensembl Gene

ENSMUSG00000021113

Gene Name

small nuclear RNA activating complex, polypeptide 1

Synonyms

2700033G17Rik, 9630050P21Rik

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

IGL00529

Quality Score

Status

Chromosome

Chromosomal Location

74011255-74035740 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 74011429 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 32 (T32A)

Ref Sequence

ENSEMBL: ENSMUSP00000021532 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021532] [ENSMUST00000222025]

AlphaFold

Q8K0S9

Predicted Effect

probably benign
Transcript: ENSMUST00000021532
AA Change: T32A

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000021532
Gene: ENSMUSG00000021113
AA Change: T32A

Domain	Start	End	E-Value	Type
low complexity region	2	16	N/A	INTRINSIC
Pfam:SNAPc_SNAP43	26	210	4.5e-65	PFAM
low complexity region	261	273	N/A	INTRINSIC
low complexity region	307	316	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000181735

Predicted Effect

probably benign
Transcript: ENSMUST00000221833

Predicted Effect

unknown
Transcript: ENSMUST00000222025
AA Change: T32A

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 10 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acsl1	T	C	8: 46,966,797 (GRCm39)		probably benign	Het
Cd36	A	G	5: 17,992,700 (GRCm39)	I413T	probably damaging	Het
Fancm	A	G	12: 65,177,191 (GRCm39)		probably benign	Het
Golim4	A	T	3: 75,793,618 (GRCm39)	N599K	probably damaging	Het
Herc2	T	C	7: 55,807,501 (GRCm39)	V2530A	probably benign	Het
Inpp5k	A	G	11: 75,522,030 (GRCm39)		probably benign	Het
Nt5c	A	T	11: 115,382,151 (GRCm39)	L76*	probably null	Het
Slc25a4	T	C	8: 46,662,346 (GRCm39)	D104G	probably damaging	Het
Smchd1	A	G	17: 71,701,794 (GRCm39)	V1066A	probably benign	Het
Usp32	G	A	11: 84,885,252 (GRCm39)	A1265V	probably damaging	Het

Other mutations in Snapc1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00272:Snapc1	APN	12	74,015,148 (GRCm39)	splice site	probably null
IGL00676:Snapc1	APN	12	74,018,687 (GRCm39)	missense	probably damaging	1.00
IGL01373:Snapc1	APN	12	74,011,454 (GRCm39)	missense	probably benign	0.00
IGL02060:Snapc1	APN	12	74,014,810 (GRCm39)	missense	probably damaging	1.00
IGL02309:Snapc1	APN	12	74,014,801 (GRCm39)	missense	probably damaging	1.00
IGL02653:Snapc1	APN	12	74,029,261 (GRCm39)	missense	probably benign	0.00
IGL02686:Snapc1	APN	12	74,011,370 (GRCm39)	intron	probably benign
IGL03160:Snapc1	APN	12	74,016,978 (GRCm39)	missense	probably damaging	1.00
PIT4362001:Snapc1	UTSW	12	74,029,269 (GRCm39)	missense	probably damaging	0.98
R0056:Snapc1	UTSW	12	74,021,806 (GRCm39)	missense	probably damaging	1.00
R0057:Snapc1	UTSW	12	74,021,806 (GRCm39)	missense	probably damaging	1.00
R0057:Snapc1	UTSW	12	74,021,806 (GRCm39)	missense	probably damaging	1.00
R0113:Snapc1	UTSW	12	74,021,806 (GRCm39)	missense	probably damaging	1.00
R0152:Snapc1	UTSW	12	74,021,806 (GRCm39)	missense	probably damaging	1.00
R0153:Snapc1	UTSW	12	74,021,806 (GRCm39)	missense	probably damaging	1.00
R0244:Snapc1	UTSW	12	74,021,806 (GRCm39)	missense	probably damaging	1.00
R0245:Snapc1	UTSW	12	74,021,806 (GRCm39)	missense	probably damaging	1.00
R0316:Snapc1	UTSW	12	74,021,806 (GRCm39)	missense	probably damaging	1.00
R0318:Snapc1	UTSW	12	74,021,806 (GRCm39)	missense	probably damaging	1.00
R0352:Snapc1	UTSW	12	74,021,806 (GRCm39)	missense	probably damaging	1.00
R0646:Snapc1	UTSW	12	74,021,806 (GRCm39)	missense	probably damaging	1.00
R0841:Snapc1	UTSW	12	74,021,780 (GRCm39)	splice site	probably benign
R2188:Snapc1	UTSW	12	74,017,001 (GRCm39)	missense	probably damaging	1.00
R2483:Snapc1	UTSW	12	74,011,417 (GRCm39)	missense	probably benign	0.02
R4165:Snapc1	UTSW	12	74,029,354 (GRCm39)	critical splice donor site	probably null
R4169:Snapc1	UTSW	12	74,029,265 (GRCm39)	missense	probably benign	0.00
R4549:Snapc1	UTSW	12	74,017,053 (GRCm39)	missense	probably damaging	0.97
R4550:Snapc1	UTSW	12	74,017,053 (GRCm39)	missense	probably damaging	0.97
R4658:Snapc1	UTSW	12	74,030,642 (GRCm39)	missense	possibly damaging	0.75
R6976:Snapc1	UTSW	12	74,016,974 (GRCm39)	missense	probably damaging	1.00
R7432:Snapc1	UTSW	12	74,015,068 (GRCm39)	missense	probably benign	0.01
R7488:Snapc1	UTSW	12	74,029,285 (GRCm39)	missense	probably benign	0.39
R8507:Snapc1	UTSW	12	74,011,506 (GRCm39)	missense	probably damaging	1.00
R8809:Snapc1	UTSW	12	74,021,812 (GRCm39)	missense	probably benign	0.31
R9287:Snapc1	UTSW	12	74,018,773 (GRCm39)	unclassified	probably benign
R9685:Snapc1	UTSW	12	74,017,115 (GRCm39)	critical splice donor site	probably null
R9705:Snapc1	UTSW	12	74,015,150 (GRCm39)	missense	probably damaging	1.00

Posted On

2012-12-06