Incidental Mutation 'IGL00836:Snx2'
ID14177
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Snx2
Ensembl Gene ENSMUSG00000034484
Gene Namesorting nexin 2
Synonyms0610030A03Rik
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #IGL00836
Quality Score
Status
Chromosome18
Chromosomal Location53176365-53220860 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to A at 53216400 bp
ZygosityHeterozygous
Amino Acid Change Methionine to Lysine at position 411 (M411K)
Ref Sequence ENSEMBL: ENSMUSP00000039243 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000037850]
Predicted Effect possibly damaging
Transcript: ENSMUST00000037850
AA Change: M411K

PolyPhen 2 Score 0.948 (Sensitivity: 0.79; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000039243
Gene: ENSMUSG00000034484
AA Change: M411K

DomainStartEndE-ValueType
Pfam:Sorting_nexin 2 134 1.6e-29 PFAM
PX 138 265 1.4e-38 SMART
Pfam:Vps5 281 514 2.2e-90 PFAM
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene belongs to the sorting nexin family whose members contain the phosphoinositide-binding phox (PX) domain. The encoded protein is a component of the retromer complex which plays a role in protein sorting in the endocytic pathway. This protein may form oligomeric complexes with other family members. Alternate splicing results in multiple transcript variants of this gene. Pseudogenes associated with this gene are located on chromosomes 1 and 7. [provided by RefSeq, May 2013]
PHENOTYPE: Homozygous mutant mice are viable and fertile and do not exhibit any apparent abnormalities. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 22 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Ccdc18 G A 5: 108,180,525 S697N probably benign Het
Cyp2c29 A G 19: 39,324,990 D310G probably damaging Het
Cyp4f13 G A 17: 32,941,164 H79Y probably benign Het
Dtna T C 18: 23,597,488 S311P probably benign Het
Dynlrb2 A G 8: 116,514,833 T39A probably benign Het
Erc2 T C 14: 28,040,521 I747T probably damaging Het
Herc6 G A 6: 57,619,549 M491I probably damaging Het
Klra3 A T 6: 130,327,144 I195N probably benign Het
Lama3 A G 18: 12,472,228 I1080V probably benign Het
Pls1 A G 9: 95,761,422 V508A possibly damaging Het
Prdm10 C A 9: 31,329,869 probably benign Het
Rnase1 T A 14: 51,145,546 Y117F probably benign Het
S100pbp A T 4: 129,182,108 N141K possibly damaging Het
Sin3a T A 9: 57,107,345 probably null Het
Slc2a2 G A 3: 28,718,741 A228T possibly damaging Het
Smurf2 A G 11: 106,852,636 Y182H probably benign Het
Stx17 T C 4: 48,158,955 S90P possibly damaging Het
Stxbp5l A T 16: 37,208,100 S534T possibly damaging Het
Tacc2 A G 7: 130,759,168 D2730G probably damaging Het
Timm8b A G 9: 50,604,994 D49G possibly damaging Het
Ufd1 G T 16: 18,827,718 probably benign Het
Zfp974 T C 7: 27,910,890 E470G possibly damaging Het
Other mutations in Snx2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00861:Snx2 APN 18 53210797 splice site probably null
IGL01116:Snx2 APN 18 53194423 splice site probably benign
IGL01642:Snx2 APN 18 53216447 missense probably damaging 0.99
IGL02178:Snx2 APN 18 53199785 missense possibly damaging 0.61
IGL02368:Snx2 APN 18 53189721 missense probably benign
IGL02597:Snx2 APN 18 53210372 missense probably benign 0.09
IGL02964:Snx2 APN 18 53194558 missense probably benign 0.00
IGL03372:Snx2 APN 18 53216391 missense probably damaging 1.00
blanched UTSW 18 53194444 missense probably damaging 0.98
bleached UTSW 18 53197925 splice site probably null
R0332:Snx2 UTSW 18 53212911 missense probably benign 0.01
R0723:Snx2 UTSW 18 53210372 missense probably benign 0.09
R0746:Snx2 UTSW 18 53197889 missense possibly damaging 0.90
R0826:Snx2 UTSW 18 53194522 missense probably benign 0.00
R0894:Snx2 UTSW 18 53176416 missense probably benign
R0970:Snx2 UTSW 18 53210690 splice site probably benign
R1897:Snx2 UTSW 18 53197878 missense probably damaging 0.99
R2049:Snx2 UTSW 18 53194444 missense probably damaging 0.98
R2910:Snx2 UTSW 18 53199874 missense probably damaging 0.99
R2911:Snx2 UTSW 18 53199874 missense probably damaging 0.99
R4460:Snx2 UTSW 18 53176444 missense probably benign 0.31
R5225:Snx2 UTSW 18 53189712 missense possibly damaging 0.91
R5352:Snx2 UTSW 18 53197925 splice site probably null
R5450:Snx2 UTSW 18 53210712 missense probably damaging 0.99
R5576:Snx2 UTSW 18 53210750 missense probably benign 0.33
R5965:Snx2 UTSW 18 53194462 nonsense probably null
R6063:Snx2 UTSW 18 53209625 nonsense probably null
R6222:Snx2 UTSW 18 53199824 nonsense probably null
R6291:Snx2 UTSW 18 53209665 critical splice donor site probably null
R6890:Snx2 UTSW 18 53212879 missense probably damaging 1.00
R7380:Snx2 UTSW 18 53194568 missense probably benign
Posted On2012-12-06