Incidental Mutation 'R1252:Cdhr18'
ID 151813
Institutional Source Beutler Lab
Gene Symbol Cdhr18
Ensembl Gene ENSMUSG00000084902
Gene Name cadherin related family member 18
Synonyms Gm281, LOC238939
MMRRC Submission 039319-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.067) question?
Stock # R1252 (G1)
Quality Score 225
Status Not validated
Chromosome 14
Chromosomal Location 8555242-8646046 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 13862444 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glycine at position 370 (D370G)
Ref Sequence ENSEMBL: ENSMUSP00000121887 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000144914]
AlphaFold D3Z1Y0
Predicted Effect probably benign
Transcript: ENSMUST00000144914
AA Change: D370G

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000121887
Gene: ENSMUSG00000084902
AA Change: D370G

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
CA 32 127 3.45e-2 SMART
CA 156 230 7.87e-9 SMART
CA 274 352 1.36e-3 SMART
CA 376 470 6.99e-3 SMART
CA 492 563 8.69e-11 SMART
CA 589 683 2.09e-1 SMART
transmembrane domain 705 727 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.1%
  • 10x: 95.6%
  • 20x: 90.2%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 39 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcb10 C T 8: 124,688,791 (GRCm39) G495D probably damaging Het
Acsm2 C T 7: 119,172,468 (GRCm39) H104Y probably benign Het
Adgrb3 G A 1: 25,167,909 (GRCm39) T1009M probably damaging Het
Arfgef2 A G 2: 166,701,877 (GRCm39) K755E probably damaging Het
Atm A T 9: 53,367,140 (GRCm39) D2491E probably damaging Het
Bptf A G 11: 106,964,077 (GRCm39) S1706P probably benign Het
Capn13 C T 17: 73,674,222 (GRCm39) G77D possibly damaging Het
Ccdc39 T C 3: 33,880,629 (GRCm39) K446R probably damaging Het
Cep135 A G 5: 76,741,962 (GRCm39) K133E possibly damaging Het
Cyp2c67 A G 19: 39,614,585 (GRCm39) M314T possibly damaging Het
Dennd5b T C 6: 148,945,985 (GRCm39) D542G probably damaging Het
Dpys A T 15: 39,687,636 (GRCm39) N387K probably damaging Het
Erc1 A T 6: 119,720,353 (GRCm39) D749E possibly damaging Het
Gucy2e A T 11: 69,126,485 (GRCm39) F298L probably benign Het
Igsf10 A G 3: 59,239,269 (GRCm39) V304A probably benign Het
Kmt2b A T 7: 30,279,912 (GRCm39) C1363S probably damaging Het
Krt87 A G 15: 101,385,711 (GRCm39) Y295H probably damaging Het
Lmo7 T C 14: 102,138,019 (GRCm39) V396A probably damaging Het
Lpl A G 8: 69,345,311 (GRCm39) D105G probably benign Het
Lrrc45 C A 11: 120,606,297 (GRCm39) T135N probably benign Het
Ltn1 C T 16: 87,212,918 (GRCm39) A548T probably benign Het
Nectin2 T G 7: 19,451,523 (GRCm39) I504L probably benign Het
Nmbr T C 10: 14,636,187 (GRCm39) I52T probably benign Het
Nop14 A T 5: 34,807,899 (GRCm39) N354K probably benign Het
Olfm1 A G 2: 28,119,447 (GRCm39) I361V probably benign Het
Or8g18 G C 9: 39,149,547 (GRCm39) P58A probably benign Het
Ovol1 T C 19: 5,603,629 (GRCm39) T91A probably benign Het
Pigz T A 16: 31,760,808 (GRCm39) V3E possibly damaging Het
Pip4k2b T C 11: 97,635,420 (GRCm39) N4S probably benign Het
Slc23a2 A T 2: 131,904,117 (GRCm39) probably null Het
Slc66a2 A G 18: 80,334,813 (GRCm39) T211A possibly damaging Het
Speg A T 1: 75,403,739 (GRCm39) D2640V probably damaging Het
Trip12 G A 1: 84,754,071 (GRCm39) Q111* probably null Het
Trub2 A G 2: 29,672,170 (GRCm39) F141S probably damaging Het
Ugcg C T 4: 59,207,798 (GRCm39) P46S probably benign Het
Wdfy4 A T 14: 32,693,729 (GRCm39) probably null Het
Zfp935 A G 13: 62,602,355 (GRCm39) F282L probably damaging Het
Zfp946 G T 17: 22,672,560 (GRCm39) probably null Het
Zkscan4 A G 13: 21,668,044 (GRCm39) E165G probably benign Het
Other mutations in Cdhr18
AlleleSourceChrCoordTypePredicted EffectPPH Score
R0115:Cdhr18 UTSW 14 13,899,571 (GRCm38) missense probably damaging 0.99
R0842:Cdhr18 UTSW 14 13,856,686 (GRCm38) missense probably benign 0.16
R1275:Cdhr18 UTSW 14 13,896,949 (GRCm38) missense probably damaging 1.00
R1631:Cdhr18 UTSW 14 13,829,796 (GRCm38) missense probably damaging 0.99
R1831:Cdhr18 UTSW 14 13,899,619 (GRCm38) missense probably damaging 1.00
R1885:Cdhr18 UTSW 14 13,828,607 (GRCm38) missense probably damaging 1.00
R1886:Cdhr18 UTSW 14 13,828,607 (GRCm38) missense probably damaging 1.00
R1887:Cdhr18 UTSW 14 13,828,607 (GRCm38) missense probably damaging 1.00
R1903:Cdhr18 UTSW 14 13,829,657 (GRCm38) missense possibly damaging 0.94
R1940:Cdhr18 UTSW 14 13,828,582 (GRCm38) missense probably null 0.95
R2324:Cdhr18 UTSW 14 13,868,077 (GRCm38) missense probably damaging 1.00
R3923:Cdhr18 UTSW 14 13,865,990 (GRCm38) nonsense probably null
R4193:Cdhr18 UTSW 14 13,914,416 (GRCm38) missense probably benign 0.02
R4195:Cdhr18 UTSW 14 13,829,772 (GRCm38) missense probably benign 0.05
R4370:Cdhr18 UTSW 14 13,862,375 (GRCm38) missense probably benign 0.03
R4675:Cdhr18 UTSW 14 13,856,724 (GRCm38) missense probably benign 0.32
R4734:Cdhr18 UTSW 14 13,845,292 (GRCm38) missense probably benign 0.13
R5387:Cdhr18 UTSW 14 13,914,438 (GRCm38) start codon destroyed probably null 0.82
R6037:Cdhr18 UTSW 14 13,864,282 (GRCm38) missense probably damaging 1.00
R6037:Cdhr18 UTSW 14 13,864,282 (GRCm38) missense probably damaging 1.00
R6177:Cdhr18 UTSW 14 13,868,002 (GRCm38) missense probably benign 0.08
R7051:Cdhr18 UTSW 14 13,828,486 (GRCm38) missense
R7205:Cdhr18 UTSW 14 13,866,032 (GRCm38) missense
R7258:Cdhr18 UTSW 14 13,899,648 (GRCm38) missense
R7833:Cdhr18 UTSW 14 13,896,968 (GRCm38) splice site probably null
R8309:Cdhr18 UTSW 14 13,814,954 (GRCm38) nonsense probably null
R8911:Cdhr18 UTSW 14 13,823,796 (GRCm38) critical splice acceptor site probably null
R9124:Cdhr18 UTSW 14 13,864,354 (GRCm38) missense
R9458:Cdhr18 UTSW 14 13,856,709 (GRCm38) missense
R9594:Cdhr18 UTSW 14 13,814,959 (GRCm38) missense unknown
Z1177:Cdhr18 UTSW 14 13,845,421 (GRCm38) missense
Z1177:Cdhr18 UTSW 14 13,823,754 (GRCm38) missense
Predicted Primers PCR Primer
(F):5'- AGCATTCCAAGTGCCTTCTGGTATG -3'
(R):5'- TGCTCTAAGGAAGACCTGTCTGCTC -3'

Sequencing Primer
(F):5'- AAGTGCCTTCTGGTATGACAGC -3'
(R):5'- TGCTCCAGGATTATCAAGGC -3'
Posted On 2014-01-29