Incidental Mutation 'R1245:Gm5828'
ID 152108
Institutional Source Beutler Lab
Gene Symbol Gm5828
Ensembl Gene ENSMUSG00000091020
Gene Name predicted gene 5828
Synonyms
MMRRC Submission 039312-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.245) question?
Stock # R1245 (G1)
Quality Score 225
Status Validated
Chromosome 1
Chromosomal Location 16838503-16840362 bp(-) (GRCm39)
Type of Mutation exon
DNA Base Change (assembly) A to T at 16839353 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Gene Model predicted gene model for transcript(s):
AlphaFold no structure available at present
Predicted Effect noncoding transcript
Transcript: ENSMUST00000071842
SMART Domains Protein: ENSMUSP00000136559
Gene: ENSMUSG00000091020

DomainStartEndE-ValueType
low complexity region 60 74 N/A INTRINSIC
low complexity region 143 163 N/A INTRINSIC
low complexity region 174 182 N/A INTRINSIC
low complexity region 207 218 N/A INTRINSIC
HMG 222 292 1.88e-17 SMART
low complexity region 307 339 N/A INTRINSIC
low complexity region 435 481 N/A INTRINSIC
Meta Mutation Damage Score 0.0869 question?
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.2%
  • 10x: 95.9%
  • 20x: 91.5%
Validation Efficiency 98% (41/42)
Allele List at MGI
Other mutations in this stock
Total: 38 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adcy1 T A 11: 7,119,410 (GRCm39) probably benign Het
Ahnak A G 19: 8,981,533 (GRCm39) N939S probably benign Het
Cblb C A 16: 51,867,550 (GRCm39) probably benign Het
Cd22 A G 7: 30,569,308 (GRCm39) S603P probably damaging Het
Col6a6 G A 9: 105,626,109 (GRCm39) R1515C possibly damaging Het
Csf1r C A 18: 61,247,884 (GRCm39) D317E probably benign Het
Dlg2 T C 7: 92,091,803 (GRCm39) probably benign Het
Enpp3 G A 10: 24,660,851 (GRCm39) probably benign Het
G530012D18Rik CAGAGAGA CAGAGAGAGA 1: 85,504,945 (GRCm39) probably null Het
Gpr137c T C 14: 45,516,522 (GRCm39) probably benign Het
Ibtk A G 9: 85,602,795 (GRCm39) probably null Het
Kctd7 A G 5: 130,177,058 (GRCm39) H96R possibly damaging Het
Lmcd1 T A 6: 112,292,673 (GRCm39) V175E probably benign Het
Lrfn2 A T 17: 49,403,277 (GRCm39) probably null Het
Ltbp1 C T 17: 75,634,189 (GRCm39) probably benign Het
Myc A G 15: 61,859,746 (GRCm39) I140V probably damaging Het
Nckap1l A G 15: 103,364,352 (GRCm39) E100G probably damaging Het
Ncs1 A G 2: 31,174,705 (GRCm39) N143S probably benign Het
Nmnat2 A G 1: 152,987,949 (GRCm39) D238G probably benign Het
Or10ag57 T A 2: 87,218,553 (GRCm39) V168E probably benign Het
Ppp2r3d G A 9: 101,071,593 (GRCm39) T675I probably damaging Het
Psma2 A G 13: 14,787,876 (GRCm39) Y6C probably damaging Het
Rspo4 G A 2: 151,709,846 (GRCm39) E84K probably damaging Het
Shank2 G A 7: 143,965,457 (GRCm39) V1015I probably benign Het
Slc35e1 T C 8: 73,246,415 (GRCm39) probably benign Het
Smg8 T C 11: 86,974,436 (GRCm39) D632G possibly damaging Het
Sppl2a A T 2: 126,755,441 (GRCm39) probably benign Het
Svep1 A G 4: 58,066,427 (GRCm39) probably null Het
Ttn T A 2: 76,776,044 (GRCm39) K1666M probably damaging Het
Ulk1 A G 5: 110,937,206 (GRCm39) probably null Het
Unc80 A G 1: 66,594,254 (GRCm39) D1211G possibly damaging Het
Vmn2r112 A G 17: 22,822,228 (GRCm39) Q302R probably benign Het
Vmn2r6 A G 3: 64,464,211 (GRCm39) S208P possibly damaging Het
Wnk1 C T 6: 119,925,418 (GRCm39) V1847I probably benign Het
Zfp653 A T 9: 21,967,718 (GRCm39) I529N probably damaging Het
Zfp948 T C 17: 21,807,104 (GRCm39) S99P probably damaging Het
Zfyve9 A G 4: 108,550,508 (GRCm39) probably benign Het
Zscan29 T C 2: 120,996,984 (GRCm39) T246A probably damaging Het
Other mutations in Gm5828
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01143:Gm5828 APN 1 16,840,172 (GRCm39) exon noncoding transcript
IGL01751:Gm5828 APN 1 16,840,208 (GRCm39) exon noncoding transcript
IGL02275:Gm5828 APN 1 16,839,342 (GRCm39) exon noncoding transcript
IGL02400:Gm5828 APN 1 16,840,042 (GRCm39) exon noncoding transcript
IGL02480:Gm5828 APN 1 16,839,766 (GRCm39) exon noncoding transcript
R0143:Gm5828 UTSW 1 16,838,579 (GRCm39) exon noncoding transcript
R1405:Gm5828 UTSW 1 16,839,768 (GRCm39) exon noncoding transcript
R1514:Gm5828 UTSW 1 16,839,583 (GRCm39) exon noncoding transcript
R1644:Gm5828 UTSW 1 16,839,485 (GRCm39) exon noncoding transcript
R2118:Gm5828 UTSW 1 16,840,199 (GRCm39) exon noncoding transcript
R2290:Gm5828 UTSW 1 16,838,568 (GRCm39) exon noncoding transcript
R3428:Gm5828 UTSW 1 16,838,838 (GRCm39) exon noncoding transcript
R3962:Gm5828 UTSW 1 16,838,868 (GRCm39) exon noncoding transcript
R4657:Gm5828 UTSW 1 16,839,642 (GRCm39) exon noncoding transcript
R5067:Gm5828 UTSW 1 16,839,516 (GRCm39) exon noncoding transcript
Predicted Primers PCR Primer
(F):5'- CCACTGTGCCTGGGATAACAGTAAC -3'
(R):5'- ATACACAGGCTGCCATCAAGGGAC -3'

Sequencing Primer
(F):5'- TGCCTGGGATAACAGTAACCATTC -3'
(R):5'- CCGAATGCAACCTTTGGG -3'
Posted On 2014-01-29