Incidental Mutation 'R1236:Spint1'
ID 152420
Institutional Source Beutler Lab
Gene Symbol Spint1
Ensembl Gene ENSMUSG00000027315
Gene Name serine protease inhibitor, Kunitz type 1
Synonyms HAI-1
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R1236 (G1)
Quality Score 225
Status Not validated
Chromosome 2
Chromosomal Location 119067841-119079995 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 119076054 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Alanine at position 217 (T217A)
Ref Sequence ENSEMBL: ENSMUSP00000106441 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028783] [ENSMUST00000110816] [ENSMUST00000110817]
AlphaFold Q9R097
Predicted Effect probably benign
Transcript: ENSMUST00000028783
AA Change: T217A

PolyPhen 2 Score 0.055 (Sensitivity: 0.94; Specificity: 0.84)
SMART Domains Protein: ENSMUSP00000028783
Gene: ENSMUSG00000027315
AA Change: T217A

DomainStartEndE-ValueType
signal peptide 1 29 N/A INTRINSIC
MANEC 39 134 1.18e-39 SMART
Blast:PKD 162 237 6e-19 BLAST
KU 242 295 3.75e-19 SMART
LDLa 312 349 2.12e-8 SMART
KU 367 420 8.04e-19 SMART
transmembrane domain 444 466 N/A INTRINSIC
low complexity region 474 492 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000110816
AA Change: T217A

PolyPhen 2 Score 0.055 (Sensitivity: 0.94; Specificity: 0.84)
SMART Domains Protein: ENSMUSP00000106440
Gene: ENSMUSG00000027315
AA Change: T217A

DomainStartEndE-ValueType
signal peptide 1 29 N/A INTRINSIC
MANEC 39 134 1.18e-39 SMART
Blast:PKD 162 237 6e-19 BLAST
KU 242 295 3.75e-19 SMART
LDLa 312 349 2.12e-8 SMART
KU 367 420 8.04e-19 SMART
transmembrane domain 444 466 N/A INTRINSIC
low complexity region 474 492 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000110817
AA Change: T217A

PolyPhen 2 Score 0.055 (Sensitivity: 0.94; Specificity: 0.84)
SMART Domains Protein: ENSMUSP00000106441
Gene: ENSMUSG00000027315
AA Change: T217A

DomainStartEndE-ValueType
signal peptide 1 29 N/A INTRINSIC
MANEC 39 134 1.18e-39 SMART
Blast:PKD 162 237 6e-19 BLAST
KU 242 295 3.75e-19 SMART
LDLa 312 349 2.12e-8 SMART
KU 367 420 8.04e-19 SMART
transmembrane domain 444 466 N/A INTRINSIC
low complexity region 474 492 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000134872
Predicted Effect noncoding transcript
Transcript: ENSMUST00000139903
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.3%
  • 10x: 96.3%
  • 20x: 92.8%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the Kunitz family of serine protease inhibitors. The protein is a potent inhibitor specific for HGF activator and is thought to be involved in the regulation of the proteolytic activation of HGF in injured tissues. Alternative splicing results in multiple variants encoding different isoforms. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mice exhibit embryonic lethality at E10.5 or earlier, growth retardation, and widespread cell apoptosis. Placental development is impaired with abnormalities in branching morphogenesis, the formation of the labyrinth layer and placental function. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 29 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700001O22Rik T C 2: 30,685,756 (GRCm39) Y360C probably damaging Het
Afap1l2 T A 19: 56,904,904 (GRCm39) H566L possibly damaging Het
Aqr G T 2: 113,947,136 (GRCm39) F1015L probably damaging Het
Cep112 T A 11: 108,750,200 (GRCm39) L901H probably damaging Het
Col26a1 A G 5: 136,783,780 (GRCm39) V229A probably benign Het
Cyp4a14 T C 4: 115,349,367 (GRCm39) N231S probably benign Het
Dmac2l T C 12: 69,788,592 (GRCm39) probably null Het
G530012D18Rik CAGAGAGA CAGAGAGAGA 1: 85,504,945 (GRCm39) probably null Het
Gm37240 T A 3: 84,435,003 (GRCm39) N13I probably benign Het
Kbtbd7 G T 14: 79,665,272 (GRCm39) C368F probably benign Het
Kyat3 A G 3: 142,444,020 (GRCm39) D418G probably benign Het
Lpcat2 A G 8: 93,613,197 (GRCm39) M246V probably damaging Het
Nbas T A 12: 13,319,242 (GRCm39) W31R probably damaging Het
Nckap1 C T 2: 80,348,286 (GRCm39) S889N probably benign Het
Npepl1 T A 2: 173,956,273 (GRCm39) probably null Het
Or6c212 A G 10: 129,558,675 (GRCm39) V246A probably damaging Het
Or8b1 T C 9: 38,399,525 (GRCm39) S67P probably damaging Het
P4ha3 T C 7: 99,943,056 (GRCm39) L147P probably damaging Het
Pkp2 C A 16: 16,043,766 (GRCm39) H173Q probably benign Het
Prlr C A 15: 10,325,367 (GRCm39) T180K probably benign Het
Psph A G 5: 129,848,540 (GRCm39) M47T probably damaging Het
Rufy2 A G 10: 62,830,549 (GRCm39) N217S probably benign Het
Sgcg T C 14: 61,483,219 (GRCm39) M61V probably damaging Het
Snrnp40 C G 4: 130,271,836 (GRCm39) probably null Het
Tert T C 13: 73,784,498 (GRCm39) L648P probably damaging Het
Vwde A T 6: 13,187,152 (GRCm39) Y778* probably null Het
Zeb2 T A 2: 44,884,658 (GRCm39) D967V probably damaging Het
Zfp687 T C 3: 94,919,355 (GRCm39) N139S probably benign Het
Zscan26 T C 13: 21,629,940 (GRCm39) M188V probably benign Het
Other mutations in Spint1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01351:Spint1 APN 2 119,076,936 (GRCm39) missense probably damaging 1.00
IGL02065:Spint1 APN 2 119,068,698 (GRCm39) missense probably benign 0.02
R0206:Spint1 UTSW 2 119,078,826 (GRCm39) splice site probably benign
R0208:Spint1 UTSW 2 119,078,826 (GRCm39) splice site probably benign
R0415:Spint1 UTSW 2 119,076,096 (GRCm39) missense probably damaging 1.00
R0691:Spint1 UTSW 2 119,076,948 (GRCm39) missense probably damaging 1.00
R2190:Spint1 UTSW 2 119,068,661 (GRCm39) missense probably benign 0.01
R3890:Spint1 UTSW 2 119,079,283 (GRCm39) missense probably benign 0.28
R4599:Spint1 UTSW 2 119,076,941 (GRCm39) missense probably damaging 1.00
R6280:Spint1 UTSW 2 119,075,759 (GRCm39) missense possibly damaging 0.89
R8739:Spint1 UTSW 2 119,079,286 (GRCm39) missense possibly damaging 0.82
R9735:Spint1 UTSW 2 119,076,897 (GRCm39) missense probably damaging 1.00
S24628:Spint1 UTSW 2 119,076,096 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AGGCCAACCACTGGCTCATTTG -3'
(R):5'- CTCTAAAGCTGCCTTTCACAGACCC -3'

Sequencing Primer
(F):5'- CATGATTCATCTGATATCCAGTCTG -3'
(R):5'- GCACTCTTCCTCACGAAGGTAG -3'
Posted On 2014-01-29