Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL01767:Psg18'

153329

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Psg18

Ensembl Gene

ENSMUSG00000003505

Gene Name

pregnancy specific beta-1-glycoprotein 18

Synonyms

Cea-3, mmCGM6, Cea3

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.054) question?

Stock #

IGL01767

Quality Score

Status

Chromosome

Chromosomal Location

18079669-18088963 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 18087322 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 112 (V112A)

Ref Sequence

ENSEMBL: ENSMUSP00000003597 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000003597] [ENSMUST00000098783]

AlphaFold

B2RSG7

Predicted Effect

possibly damaging
Transcript: ENSMUST00000003597
AA Change: V112A

PolyPhen 2 Score 0.799 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000003597
Gene: ENSMUSG00000003505
AA Change: V112A

Domain	Start	End	E-Value	Type
low complexity region	19	30	N/A	INTRINSIC
IG	40	140	2.11e-2	SMART
IG	161	262	1.03e0	SMART
IG	281	380	2.15e-3	SMART
IGc2	398	462	1.58e-10	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000098783

SMART Domains

Protein: ENSMUSP00000096380
Gene: ENSMUSG00000003505

Domain	Start	End	E-Value	Type
IG	40	141	1.03e0	SMART
IG	160	259	2.15e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000182983

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 67 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aadat	A	T	8: 60,960,126 (GRCm39)	D31V	probably damaging	Het
Acaca	A	T	11: 84,211,368 (GRCm39)	Y1560F	probably benign	Het
Actl7a	A	G	4: 56,743,980 (GRCm39)	E169G	probably damaging	Het
Adgrb3	A	G	1: 25,598,895 (GRCm39)	V270A	probably benign	Het
Adgre4	G	A	17: 56,104,740 (GRCm39)	V269I	probably benign	Het
Ankhd1	A	G	18: 36,781,427 (GRCm39)	T2160A	probably damaging	Het
Bltp1	T	C	3: 37,095,512 (GRCm39)	V4505A	probably benign	Het
Bnip2	T	A	9: 69,909,398 (GRCm39)		probably benign	Het
Casp16	A	G	17: 23,771,027 (GRCm39)	V126A	probably damaging	Het
Ccser1	C	A	6: 61,695,136 (GRCm39)	T157K	probably benign	Het
Cdh23	A	G	10: 60,151,503 (GRCm39)	S2459P	probably damaging	Het
Cdk5rap3	A	T	11: 96,804,291 (GRCm39)	C21S	probably damaging	Het
Chmp6	G	A	11: 119,807,812 (GRCm39)	E72K	probably benign	Het
Cldn23	T	C	8: 36,292,816 (GRCm39)	Y224C	probably damaging	Het
Cry1	C	T	10: 84,982,338 (GRCm39)	G336D	probably damaging	Het
Cyp4f17	T	A	17: 32,725,956 (GRCm39)	F30I	probably benign	Het
Dgcr8	T	A	16: 18,096,200 (GRCm39)	D496V	probably damaging	Het
Dhx9	A	G	1: 153,344,614 (GRCm39)		probably benign	Het
Dnah10	C	T	5: 124,820,801 (GRCm39)		probably benign	Het
Dock9	T	C	14: 121,860,282 (GRCm39)	E880G	possibly damaging	Het
Dscam	A	G	16: 96,456,136 (GRCm39)	V1264A	probably damaging	Het
Eno1	T	C	4: 150,331,167 (GRCm39)	Y270H	probably benign	Het
Eprs1	A	G	1: 185,117,112 (GRCm39)	D385G	probably damaging	Het
Ercc2	A	G	7: 19,124,346 (GRCm39)	Y215C	probably damaging	Het
Fscn2	A	G	11: 120,258,576 (GRCm39)	N400S	possibly damaging	Het
Fuca1	C	T	4: 135,666,512 (GRCm39)	T449I	probably benign	Het
Gm43638	T	C	5: 87,613,290 (GRCm39)	K492E	probably damaging	Het
Gm5263	T	G	1: 146,296,302 (GRCm39)		noncoding transcript	Het
Gm8122	T	C	14: 43,090,158 (GRCm39)	T111A	unknown	Het
Gtf3c2	T	A	5: 31,314,979 (GRCm39)	N923Y	probably benign	Het
Il17a	T	A	1: 20,803,864 (GRCm39)	D86E	probably benign	Het
Itgb2l	G	T	16: 96,231,775 (GRCm39)	N330K	probably benign	Het
Kcnj11	T	C	7: 45,748,489 (GRCm39)	H278R	probably benign	Het
Khdrbs2	T	A	1: 32,658,257 (GRCm39)	Y272*	probably null	Het
Kndc1	A	T	7: 139,509,959 (GRCm39)	Q1267L	probably damaging	Het
Loxhd1	T	A	18: 77,374,120 (GRCm39)	F64I	possibly damaging	Het
Lrig2	T	A	3: 104,398,861 (GRCm39)	K222N	probably benign	Het
Lrrcc1	T	A	3: 14,612,332 (GRCm39)	Y378N	probably damaging	Het
Mblac2	T	C	13: 81,898,434 (GRCm39)	L270P	probably damaging	Het
Med13	A	T	11: 86,210,609 (GRCm39)	I511N	probably benign	Het
Myo3a	A	T	2: 22,428,033 (GRCm39)	E763D	probably damaging	Het
Or1e25	T	A	11: 73,493,858 (GRCm39)	F151I	probably benign	Het
Or2n1	G	T	17: 38,486,577 (GRCm39)	V201L	probably benign	Het
Or4a68	C	T	2: 89,270,144 (GRCm39)	V160I	probably benign	Het
Or5b97	T	A	19: 12,879,112 (GRCm39)	T11S	probably benign	Het
Or7g27	G	A	9: 19,250,598 (GRCm39)	V281I	possibly damaging	Het
Plxna4	T	A	6: 32,214,613 (GRCm39)	I623F	possibly damaging	Het
Ppp2ca	T	A	11: 52,008,882 (GRCm39)	Y127*	probably null	Het
Ptprj	A	T	2: 90,299,918 (GRCm39)	N108K	probably benign	Het
Rictor	A	G	15: 6,806,865 (GRCm39)	Y707C	probably damaging	Het
Rptn	T	C	3: 93,302,946 (GRCm39)	F93S	probably benign	Het
Rxrg	T	A	1: 167,454,884 (GRCm39)	C156S	probably damaging	Het
Slc24a4	T	C	12: 102,189,946 (GRCm39)		probably benign	Het
Slc25a27	C	T	17: 43,974,964 (GRCm39)		probably null	Het
Slx4	T	C	16: 3,808,112 (GRCm39)	K481E	probably benign	Het
Snx19	T	C	9: 30,374,560 (GRCm39)	W940R	possibly damaging	Het
Spopfm1	T	A	3: 94,173,791 (GRCm39)	D262E	probably benign	Het
Tasor2	G	A	13: 3,626,633 (GRCm39)	P1106S	probably benign	Het
Tcf20	G	A	15: 82,740,209 (GRCm39)	P414L	probably damaging	Het
Treml2	T	C	17: 48,609,838 (GRCm39)	V90A	probably benign	Het
Uckl1	C	T	2: 181,211,327 (GRCm39)	V501M	probably damaging	Het
Unc79	C	T	12: 103,108,256 (GRCm39)	T1937I	probably damaging	Het
Vmn2r17	A	T	5: 109,567,903 (GRCm39)	I9F	probably benign	Het
Vmn2r44	T	C	7: 8,383,237 (GRCm39)	H119R	probably benign	Het
Vmn2r78	A	G	7: 86,603,643 (GRCm39)	D607G	probably benign	Het
Vps13a	C	T	19: 16,641,258 (GRCm39)	G2288D	probably damaging	Het
Znfx1	G	T	2: 166,897,643 (GRCm39)	T427N	probably damaging	Het

Other mutations in Psg18

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01458:Psg18	APN	7	18,088,741 (GRCm39)	start codon destroyed	probably null	0.99
IGL01748:Psg18	APN	7	18,087,476 (GRCm39)	missense	probably benign	0.05
IGL02727:Psg18	APN	7	18,079,875 (GRCm39)	missense	probably damaging	1.00
IGL02744:Psg18	APN	7	18,083,327 (GRCm39)	missense	probably benign	0.38
G1Funyon:Psg18	UTSW	7	18,087,302 (GRCm39)	missense	probably damaging	0.99
PIT4466001:Psg18	UTSW	7	18,083,241 (GRCm39)	missense	probably benign	0.30
R0331:Psg18	UTSW	7	18,087,233 (GRCm39)	missense	probably benign	0.03
R1077:Psg18	UTSW	7	18,085,000 (GRCm39)	missense	possibly damaging	0.84
R1171:Psg18	UTSW	7	18,080,004 (GRCm39)	missense	probably benign	0.10
R1173:Psg18	UTSW	7	18,088,742 (GRCm39)	start codon destroyed	probably null	0.97
R1234:Psg18	UTSW	7	18,083,115 (GRCm39)	missense	probably damaging	1.00
R1553:Psg18	UTSW	7	18,087,406 (GRCm39)	missense	probably benign	0.19
R1632:Psg18	UTSW	7	18,084,824 (GRCm39)	missense	probably benign	0.02
R2108:Psg18	UTSW	7	18,084,799 (GRCm39)	missense	probably damaging	1.00
R2439:Psg18	UTSW	7	18,080,044 (GRCm39)	missense	probably benign	0.24
R3032:Psg18	UTSW	7	18,084,904 (GRCm39)	missense	probably benign	0.01
R3053:Psg18	UTSW	7	18,083,118 (GRCm39)	missense	probably damaging	1.00
R3432:Psg18	UTSW	7	18,083,096 (GRCm39)	missense	possibly damaging	0.61
R3725:Psg18	UTSW	7	18,088,748 (GRCm39)	start gained	probably benign
R4479:Psg18	UTSW	7	18,084,787 (GRCm39)	missense	probably benign	0.01
R4480:Psg18	UTSW	7	18,084,787 (GRCm39)	missense	probably benign	0.01
R4846:Psg18	UTSW	7	18,084,711 (GRCm39)	nonsense	probably null
R4858:Psg18	UTSW	7	18,087,409 (GRCm39)	missense	possibly damaging	0.49
R5010:Psg18	UTSW	7	18,083,279 (GRCm39)	missense	probably damaging	1.00
R5225:Psg18	UTSW	7	18,079,874 (GRCm39)	missense	probably damaging	1.00
R5450:Psg18	UTSW	7	18,087,350 (GRCm39)	missense	probably benign	0.32
R5526:Psg18	UTSW	7	18,083,273 (GRCm39)	missense	probably damaging	1.00
R5840:Psg18	UTSW	7	18,080,527 (GRCm39)	intron	probably benign
R6409:Psg18	UTSW	7	18,087,446 (GRCm39)	missense	probably benign
R7164:Psg18	UTSW	7	18,084,862 (GRCm39)	missense	possibly damaging	0.89
R7276:Psg18	UTSW	7	18,079,909 (GRCm39)	missense	probably damaging	0.99
R7768:Psg18	UTSW	7	18,079,953 (GRCm39)	missense	probably damaging	1.00
R8301:Psg18	UTSW	7	18,087,302 (GRCm39)	missense	probably damaging	0.99
R8700:Psg18	UTSW	7	18,087,550 (GRCm39)	missense	probably damaging	1.00
R8982:Psg18	UTSW	7	18,083,300 (GRCm39)	missense	probably benign	0.20
R9042:Psg18	UTSW	7	18,083,047 (GRCm39)	missense	probably benign	0.44
R9054:Psg18	UTSW	7	18,087,450 (GRCm39)	missense	possibly damaging	0.82
R9442:Psg18	UTSW	7	18,083,185 (GRCm39)	nonsense	probably null
R9538:Psg18	UTSW	7	18,084,713 (GRCm39)	missense	probably benign	0.01
R9689:Psg18	UTSW	7	18,084,880 (GRCm39)	missense	probably benign	0.00
Z1176:Psg18	UTSW	7	18,088,712 (GRCm39)	missense	probably benign	0.07
Z1177:Psg18	UTSW	7	18,083,123 (GRCm39)	missense	probably benign	0.10
Z1177:Psg18	UTSW	7	18,083,040 (GRCm39)	missense	probably benign	0.30

Posted On

2014-02-04