Incidental Mutation 'IGL01803:Sall3'
ID 155573
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Sall3
Ensembl Gene ENSMUSG00000024565
Gene Name spalt like transcription factor 3
Synonyms Salt, B130022O04Rik, Spalt, Msal, Msal-1
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # IGL01803
Quality Score
Status
Chromosome 18
Chromosomal Location 81010204-81030236 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 81013047 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Methionine to Valine at position 1130 (M1130V)
Ref Sequence ENSEMBL: ENSMUSP00000056967 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000057950]
AlphaFold no structure available at present
Predicted Effect possibly damaging
Transcript: ENSMUST00000057950
AA Change: M1130V

PolyPhen 2 Score 0.655 (Sensitivity: 0.87; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000056967
Gene: ENSMUSG00000024565
AA Change: M1130V

DomainStartEndE-ValueType
low complexity region 34 51 N/A INTRINSIC
low complexity region 143 161 N/A INTRINSIC
low complexity region 189 206 N/A INTRINSIC
low complexity region 210 231 N/A INTRINSIC
low complexity region 271 289 N/A INTRINSIC
low complexity region 323 342 N/A INTRINSIC
low complexity region 350 371 N/A INTRINSIC
ZnF_C2H2 427 449 2.57e-3 SMART
ZnF_C2H2 455 477 3.21e-4 SMART
low complexity region 555 568 N/A INTRINSIC
ZnF_C2H2 692 714 3.99e0 SMART
ZnF_C2H2 720 742 2.99e-4 SMART
ZnF_C2H2 752 774 1.6e-4 SMART
low complexity region 834 852 N/A INTRINSIC
low complexity region 901 923 N/A INTRINSIC
low complexity region 993 1007 N/A INTRINSIC
ZnF_C2H2 1061 1083 1.69e-3 SMART
ZnF_C2H2 1089 1111 5.99e-4 SMART
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a sal-like C2H2-type zinc-finger protein, and belongs to a family of evolutionarily conserved genes found in species as diverse as Drosophila, C. elegans, and vertebrates. Mutations in some of these genes are associated with congenital disorders in human, suggesting their importance in embryonic development. This protein binds to DNA methyltransferase 3 alpha (DNMT3A), and reduces DNMT3A-mediated CpG island methylation. It is suggested that silencing of this gene, resulting in acceleration of DNA methylation, may have a role in oncogenesis. [provided by RefSeq, Oct 2011]
PHENOTYPE: Homozygous null mice display neonatal lethality with an impaired suckling ability, truncated soft palate, small epiglottis, and abnormal cranial nerve morphology. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 35 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adamts19 T A 18: 59,085,541 (GRCm39) L532Q probably damaging Het
Bod1l A T 5: 41,974,732 (GRCm39) V2194D probably damaging Het
Cenpf G A 1: 189,386,968 (GRCm39) Q1771* probably null Het
Cfap100 C A 6: 90,392,717 (GRCm39) R131L probably benign Het
Coch A T 12: 51,650,082 (GRCm39) Q357L probably benign Het
Col14a1 A G 15: 55,282,210 (GRCm39) T824A unknown Het
Dnah9 T C 11: 66,009,655 (GRCm39) Y744C probably damaging Het
Dusp13b A G 14: 21,783,907 (GRCm39) V201A probably damaging Het
Egf T A 3: 129,530,415 (GRCm39) H249L probably benign Het
Elmod1 G A 9: 53,838,764 (GRCm39) P132L probably benign Het
Eps8l2 T C 7: 140,938,143 (GRCm39) V459A probably benign Het
Fbn1 T C 2: 125,192,207 (GRCm39) D1434G probably damaging Het
Fbn1 G A 2: 125,143,645 (GRCm39) T2828I probably benign Het
Gbp9 C T 5: 105,242,039 (GRCm39) D173N probably damaging Het
Gbp9 T C 5: 105,232,884 (GRCm39) D256G probably damaging Het
Gpsm1 G A 2: 26,236,921 (GRCm39) A580T probably damaging Het
Hnrnpf T C 6: 117,884,094 (GRCm39) probably benign Het
Krt33a T C 11: 99,902,843 (GRCm39) E327G probably benign Het
M1ap T A 6: 82,982,565 (GRCm39) I283K probably benign Het
Mars2 A G 1: 55,277,155 (GRCm39) S253G probably damaging Het
Myh6 A T 14: 55,182,000 (GRCm39) M1767K probably damaging Het
Myo3a T A 2: 22,245,926 (GRCm39) D16E probably damaging Het
Pitrm1 T A 13: 6,629,471 (GRCm39) Y978N probably benign Het
Plekha6 G T 1: 133,200,152 (GRCm39) E66* probably null Het
Polk C T 13: 96,641,030 (GRCm39) V176M probably damaging Het
Pom121 G T 5: 135,410,463 (GRCm39) probably benign Het
Rnf213 T A 11: 119,332,133 (GRCm39) D2447E probably damaging Het
Scn3a A G 2: 65,352,127 (GRCm39) probably benign Het
Sel1l A T 12: 91,797,504 (GRCm39) M241K probably benign Het
Septin4 G A 11: 87,459,075 (GRCm39) S483N probably benign Het
Ssh2 T G 11: 77,316,156 (GRCm39) L259R probably damaging Het
Tnr G T 1: 159,695,813 (GRCm39) G579W probably damaging Het
Vmn1r85 G T 7: 12,818,496 (GRCm39) A216D probably damaging Het
Vmn2r83 C A 10: 79,304,894 (GRCm39) H35N probably benign Het
Zar1l T A 5: 150,441,569 (GRCm39) Y19F probably benign Het
Other mutations in Sall3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01088:Sall3 APN 18 81,016,447 (GRCm39) missense probably damaging 0.98
IGL01630:Sall3 APN 18 81,014,484 (GRCm39) missense probably benign 0.03
IGL01713:Sall3 APN 18 81,013,062 (GRCm39) missense probably damaging 1.00
IGL02627:Sall3 APN 18 81,015,576 (GRCm39) missense possibly damaging 0.86
IGL02858:Sall3 APN 18 81,012,728 (GRCm39) missense probably damaging 1.00
IGL03177:Sall3 APN 18 81,016,183 (GRCm39) missense probably benign 0.00
fountain UTSW 18 81,017,691 (GRCm39) missense probably damaging 0.99
IGL02984:Sall3 UTSW 18 81,016,665 (GRCm39) missense probably benign 0.01
R1055:Sall3 UTSW 18 81,013,007 (GRCm39) missense probably benign 0.24
R1258:Sall3 UTSW 18 81,017,280 (GRCm39) missense probably damaging 1.00
R1932:Sall3 UTSW 18 81,012,968 (GRCm39) missense probably benign 0.44
R1976:Sall3 UTSW 18 81,015,108 (GRCm39) missense probably benign 0.42
R2124:Sall3 UTSW 18 81,015,012 (GRCm39) missense probably benign 0.01
R2142:Sall3 UTSW 18 81,013,046 (GRCm39) missense probably damaging 0.98
R2199:Sall3 UTSW 18 81,015,085 (GRCm39) missense probably benign 0.27
R2365:Sall3 UTSW 18 81,015,007 (GRCm39) missense probably benign 0.01
R3856:Sall3 UTSW 18 81,015,717 (GRCm39) missense probably damaging 1.00
R4022:Sall3 UTSW 18 81,013,055 (GRCm39) missense probably benign 0.05
R4050:Sall3 UTSW 18 81,014,697 (GRCm39) missense probably benign 0.03
R4085:Sall3 UTSW 18 81,015,348 (GRCm39) missense probably damaging 0.99
R4764:Sall3 UTSW 18 81,017,691 (GRCm39) missense probably damaging 0.99
R4874:Sall3 UTSW 18 81,017,188 (GRCm39) missense probably benign 0.33
R4948:Sall3 UTSW 18 81,014,626 (GRCm39) missense probably benign 0.20
R5274:Sall3 UTSW 18 81,013,052 (GRCm39) missense probably benign 0.15
R5602:Sall3 UTSW 18 81,016,027 (GRCm39) missense probably benign
R6063:Sall3 UTSW 18 81,017,470 (GRCm39) missense possibly damaging 0.52
R6256:Sall3 UTSW 18 81,013,076 (GRCm39) missense possibly damaging 0.74
R6431:Sall3 UTSW 18 81,016,402 (GRCm39) missense possibly damaging 0.94
R6523:Sall3 UTSW 18 81,016,403 (GRCm39) missense possibly damaging 0.68
R6719:Sall3 UTSW 18 81,014,721 (GRCm39) missense probably damaging 0.99
R6861:Sall3 UTSW 18 81,017,590 (GRCm39) nonsense probably null
R7078:Sall3 UTSW 18 81,017,314 (GRCm39) missense probably damaging 0.97
R7107:Sall3 UTSW 18 81,016,969 (GRCm39) missense probably benign 0.01
R7108:Sall3 UTSW 18 81,016,969 (GRCm39) missense probably benign 0.01
R7453:Sall3 UTSW 18 81,015,255 (GRCm39) missense probably benign 0.07
R7491:Sall3 UTSW 18 81,015,920 (GRCm39) missense probably benign 0.03
R7496:Sall3 UTSW 18 81,016,579 (GRCm39) missense probably benign 0.07
R7584:Sall3 UTSW 18 81,017,745 (GRCm39) missense probably benign 0.00
R7599:Sall3 UTSW 18 81,015,267 (GRCm39) missense possibly damaging 0.56
R7809:Sall3 UTSW 18 81,017,575 (GRCm39) missense probably benign 0.00
R8244:Sall3 UTSW 18 81,016,969 (GRCm39) missense probably benign 0.01
R8245:Sall3 UTSW 18 81,016,969 (GRCm39) missense probably benign 0.01
R8250:Sall3 UTSW 18 81,016,743 (GRCm39) missense probably benign 0.01
R8335:Sall3 UTSW 18 81,012,801 (GRCm39) missense probably benign 0.35
R8360:Sall3 UTSW 18 81,017,232 (GRCm39) missense probably benign 0.31
R8410:Sall3 UTSW 18 81,016,969 (GRCm39) missense probably benign 0.01
R8476:Sall3 UTSW 18 81,015,333 (GRCm39) nonsense probably null
R8712:Sall3 UTSW 18 81,017,236 (GRCm39) missense probably benign 0.03
R8726:Sall3 UTSW 18 81,029,708 (GRCm39) missense possibly damaging 0.89
R9192:Sall3 UTSW 18 81,017,124 (GRCm39) missense probably benign 0.05
R9653:Sall3 UTSW 18 81,016,228 (GRCm39) missense probably benign 0.03
R9701:Sall3 UTSW 18 81,017,443 (GRCm39) missense probably benign 0.07
Z1176:Sall3 UTSW 18 81,015,975 (GRCm39) missense probably benign 0.19
Z1177:Sall3 UTSW 18 81,017,491 (GRCm39) missense probably benign 0.03
Posted On 2014-02-04