Incidental Mutation 'IGL01804:Ly6g6f'
ID 155618
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Ly6g6f
Ensembl Gene ENSMUSG00000034923
Gene Name lymphocyte antigen 6 family member G6F
Synonyms
Accession Numbers
Essential gene? Probably non essential (E-score: 0.063) question?
Stock # IGL01804
Quality Score
Status
Chromosome 17
Chromosomal Location 35299514-35304571 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 35300146 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glycine at position 234 (D234G)
Ref Sequence ENSEMBL: ENSMUSP00000046380 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000013910] [ENSMUST00000038507] [ENSMUST00000172494] [ENSMUST00000172678] [ENSMUST00000172959]
AlphaFold B2RXM6
Predicted Effect probably benign
Transcript: ENSMUST00000013910
SMART Domains Protein: ENSMUSP00000013910
Gene: ENSMUSG00000013766

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
LU 28 117 1.65e-2 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000038507
AA Change: D234G

PolyPhen 2 Score 0.845 (Sensitivity: 0.83; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000046380
Gene: ENSMUSG00000034923
AA Change: D234G

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
IG 21 127 6.02e-7 SMART
transmembrane domain 237 259 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000172494
SMART Domains Protein: ENSMUSP00000133645
Gene: ENSMUSG00000013766

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
Blast:LU 28 50 1e-8 BLAST
Predicted Effect noncoding transcript
Transcript: ENSMUST00000172639
Predicted Effect probably benign
Transcript: ENSMUST00000172678
SMART Domains Protein: ENSMUSP00000134073
Gene: ENSMUSG00000013766

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
LU 28 117 1.65e-2 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000172745
Predicted Effect probably benign
Transcript: ENSMUST00000172959
SMART Domains Protein: ENSMUSP00000133753
Gene: ENSMUSG00000013766

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
Pfam:Activin_recp 82 143 2.3e-7 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000173120
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The human G6f protein is a type I transmembrane protein belonging to the immunoglobin (Ig) superfamily, which is comprised of cell-surface proteins involved in the immune system and cellular recognition (de Vet et al., 2003 [PubMed 12852788]).[supplied by OMIM, Mar 2008]
Allele List at MGI
Other mutations in this stock
Total: 41 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca12 T C 1: 71,315,342 (GRCm39) N1860D probably benign Het
Abca2 T A 2: 25,336,637 (GRCm39) C2248S probably damaging Het
Adamts16 G A 13: 70,949,080 (GRCm39) Q194* probably null Het
Cetn3 A T 13: 81,932,779 (GRCm39) K13* probably null Het
Cldn18 T A 9: 99,580,901 (GRCm39) K116* probably null Het
Cntn5 T A 9: 9,831,542 (GRCm39) I613F probably damaging Het
Cyp46a1 A G 12: 108,321,745 (GRCm39) I324V probably benign Het
Ddb1 A C 19: 10,590,382 (GRCm39) E303A probably damaging Het
Dnajc2 A G 5: 21,962,361 (GRCm39) V539A probably damaging Het
Dock2 T A 11: 34,212,433 (GRCm39) Y1236F probably benign Het
Dpf1 T A 7: 29,015,926 (GRCm39) C383S probably damaging Het
Edc4 T A 8: 106,617,289 (GRCm39) I1052N possibly damaging Het
Ehmt1 A G 2: 24,681,966 (GRCm39) L1243P probably damaging Het
Exoc6b A G 6: 84,885,148 (GRCm39) S264P probably damaging Het
Gbx2 T C 1: 89,856,703 (GRCm39) E229G probably benign Het
Hip1r T A 5: 124,139,613 (GRCm39) probably null Het
Lig1 A G 7: 13,043,131 (GRCm39) K859E probably benign Het
Mmp11 G T 10: 75,764,304 (GRCm39) L54I probably benign Het
Naip5 A T 13: 100,358,092 (GRCm39) L1048Q probably damaging Het
Or4c122 C A 2: 89,079,566 (GRCm39) M157I probably benign Het
Or6k14 A G 1: 173,927,401 (GRCm39) I126V probably damaging Het
Or7g12 T A 9: 18,900,136 (GRCm39) M284K probably benign Het
Or8g17 T C 9: 38,930,697 (GRCm39) I47V probably benign Het
Pappa2 T C 1: 158,764,089 (GRCm39) D474G probably benign Het
Plxna1 A G 6: 89,306,628 (GRCm39) Y1401H probably damaging Het
Prrg4 T A 2: 104,663,035 (GRCm39) E190D probably damaging Het
Rnf213 T C 11: 119,333,092 (GRCm39) F2767S probably damaging Het
Scgb1b2 T A 7: 30,991,155 (GRCm39) probably benign Het
Sec31a A G 5: 100,523,065 (GRCm39) probably null Het
Slc12a4 A G 8: 106,671,033 (GRCm39) S1014P probably damaging Het
Spns2 A T 11: 72,348,130 (GRCm39) I279N possibly damaging Het
Spta1 A T 1: 174,071,746 (GRCm39) H2242L probably benign Het
Tcaf3 T A 6: 42,574,063 (GRCm39) I50F probably damaging Het
Tnfaip8l1 G A 17: 56,479,214 (GRCm39) S168N probably benign Het
Trak1 C T 9: 121,271,751 (GRCm39) probably benign Het
Trpv4 A T 5: 114,782,847 (GRCm39) N38K possibly damaging Het
Ube2o T C 11: 116,435,199 (GRCm39) T530A probably benign Het
Vmn2r2 A G 3: 64,041,677 (GRCm39) V346A possibly damaging Het
Vmn2r86 A C 10: 130,288,858 (GRCm39) D214E probably damaging Het
Wwc1 C A 11: 35,732,751 (GRCm39) D986Y probably damaging Het
Xdh T C 17: 74,199,754 (GRCm39) D1184G probably damaging Het
Other mutations in Ly6g6f
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01647:Ly6g6f APN 17 35,299,817 (GRCm39) unclassified probably benign
IGL02280:Ly6g6f APN 17 35,302,194 (GRCm39) missense probably benign 0.06
IGL02455:Ly6g6f APN 17 35,301,866 (GRCm39) missense possibly damaging 0.91
IGL02694:Ly6g6f APN 17 35,300,144 (GRCm39) missense possibly damaging 0.96
R0519:Ly6g6f UTSW 17 35,301,828 (GRCm39) missense possibly damaging 0.53
R1169:Ly6g6f UTSW 17 35,302,240 (GRCm39) missense probably damaging 0.99
R1796:Ly6g6f UTSW 17 35,302,478 (GRCm39) missense probably benign 0.02
R5549:Ly6g6f UTSW 17 35,302,333 (GRCm39) missense possibly damaging 0.51
R6717:Ly6g6f UTSW 17 35,304,550 (GRCm39) start codon destroyed probably benign 0.01
R8012:Ly6g6f UTSW 17 35,300,060 (GRCm39) missense possibly damaging 0.53
R9443:Ly6g6f UTSW 17 35,299,826 (GRCm39) missense possibly damaging 0.96
X0017:Ly6g6f UTSW 17 35,304,514 (GRCm39) missense probably benign 0.17
X0027:Ly6g6f UTSW 17 35,300,096 (GRCm39) missense probably benign 0.03
Z1177:Ly6g6f UTSW 17 35,302,008 (GRCm39) missense possibly damaging 0.96
Posted On 2014-02-04