Incidental Mutation 'R1349:Cd209d'
ID 156603
Institutional Source Beutler Lab
Gene Symbol Cd209d
Ensembl Gene ENSMUSG00000031495
Gene Name CD209d antigen
Synonyms SIGNR3, mSIGNR3, SIGN-R3
MMRRC Submission 039414-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R1349 (G1)
Quality Score 225
Status Validated
Chromosome 8
Chromosomal Location 3921824-3928548 bp(-) (GRCm39)
Type of Mutation unclassified
DNA Base Change (assembly) C to A at 3928515 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000147198 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000011445] [ENSMUST00000209176]
AlphaFold Q91ZW8
Predicted Effect probably benign
Transcript: ENSMUST00000011445
SMART Domains Protein: ENSMUSP00000011445
Gene: ENSMUSG00000031495

DomainStartEndE-ValueType
low complexity region 54 74 N/A INTRINSIC
CLECT 106 227 2.34e-34 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000209176
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.1%
  • 10x: 95.6%
  • 20x: 90.8%
Validation Efficiency 98% (46/47)
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele exhibit normal susceptibility to bacterial infection despite decreased T and B cell proliferation and extramedullary hematopoiesis in the spleen. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 45 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2810004N23Rik G A 8: 125,587,992 (GRCm39) T36I possibly damaging Het
Adcy2 T A 13: 68,816,652 (GRCm39) N778I probably damaging Het
Ak5 G T 3: 152,239,071 (GRCm39) D301E probably damaging Het
Akap13 G A 7: 75,259,340 (GRCm39) G655S possibly damaging Het
Ankrd28 A T 14: 31,467,218 (GRCm39) M248K probably benign Het
Atf7ip2 G A 16: 10,052,195 (GRCm39) V225I probably damaging Het
Ccdc157 A T 11: 4,099,056 (GRCm39) I48N probably benign Het
Cecr2 G A 6: 120,734,564 (GRCm39) G613E probably damaging Het
Clspn C T 4: 126,457,770 (GRCm39) A98V probably benign Het
Cntnap5b G A 1: 100,091,813 (GRCm39) D499N probably benign Het
Cox7a2 G A 9: 79,665,819 (GRCm39) R21* probably null Het
Cul9 C G 17: 46,833,101 (GRCm39) A1326P probably damaging Het
Dbpht2 C CNNNNNNNNNNNNNNNNNN 12: 74,345,836 (GRCm39) noncoding transcript Het
Dlg1 T C 16: 31,631,638 (GRCm39) I208T probably damaging Het
Dmxl1 A T 18: 50,021,920 (GRCm39) N1612Y probably damaging Het
Epha3 A G 16: 63,431,416 (GRCm39) I495T possibly damaging Het
Frem1 T C 4: 82,840,542 (GRCm39) probably benign Het
Glipr1 A G 10: 111,829,437 (GRCm39) V108A probably benign Het
Gpatch2l T C 12: 86,307,483 (GRCm39) L287P possibly damaging Het
Hp T G 8: 110,301,938 (GRCm39) K337Q probably benign Het
Htr1a T A 13: 105,581,874 (GRCm39) C371* probably null Het
Leo1 T C 9: 75,356,751 (GRCm39) V377A possibly damaging Het
Lsg1 A G 16: 30,383,472 (GRCm39) F583L possibly damaging Het
Map4k4 C A 1: 40,060,319 (GRCm39) P1103Q probably damaging Het
Mybph T C 1: 134,121,353 (GRCm39) S38P probably benign Het
Myo1e T G 9: 70,194,351 (GRCm39) probably benign Het
Nefh T TNNNNNNNNNNNNNNNNNN 11: 4,891,010 (GRCm39) probably benign Het
Oca2 T A 7: 56,185,716 (GRCm39) M814K probably benign Het
Odad3 C T 9: 21,904,916 (GRCm39) R290H probably damaging Het
Pkd1 T C 17: 24,794,240 (GRCm39) C1976R probably damaging Het
Pogz T A 3: 94,768,199 (GRCm39) L126M probably damaging Het
Rec8 T C 14: 55,856,431 (GRCm39) Y68H probably damaging Het
Ryr3 T A 2: 112,664,546 (GRCm39) S1582C probably damaging Het
Sh3pxd2a A T 19: 47,256,160 (GRCm39) W853R probably damaging Het
Slc6a7 C T 18: 61,133,615 (GRCm39) G527D probably benign Het
Spopfm1 A G 3: 94,173,435 (GRCm39) T148A possibly damaging Het
Tgm1 A G 14: 55,948,658 (GRCm39) probably benign Het
Tnxb T C 17: 34,929,267 (GRCm39) V2770A possibly damaging Het
Togaram1 T A 12: 65,057,919 (GRCm39) M1502K probably damaging Het
Vmn1r11 G A 6: 57,114,963 (GRCm39) C209Y probably benign Het
Vmn2r102 A T 17: 19,880,887 (GRCm39) probably benign Het
Vmn2r12 T C 5: 109,234,452 (GRCm39) M587V probably benign Het
Vmn2r63 A G 7: 42,578,642 (GRCm39) F84L possibly damaging Het
Wdr35 A T 12: 9,069,870 (GRCm39) probably benign Het
Wdr73 C A 7: 80,543,000 (GRCm39) V176L probably damaging Het
Other mutations in Cd209d
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01634:Cd209d APN 8 3,927,974 (GRCm39) splice site probably null
IGL01707:Cd209d APN 8 3,928,296 (GRCm39) missense probably benign
IGL02864:Cd209d APN 8 3,927,122 (GRCm39) missense probably benign 0.08
IGL03066:Cd209d APN 8 3,928,437 (GRCm39) critical splice donor site probably null
IGL03297:Cd209d APN 8 3,928,476 (GRCm39) missense possibly damaging 0.92
R0324:Cd209d UTSW 8 3,928,258 (GRCm39) missense probably benign 0.31
R1335:Cd209d UTSW 8 3,922,027 (GRCm39) missense probably damaging 1.00
R1372:Cd209d UTSW 8 3,928,515 (GRCm39) unclassified probably benign
R1507:Cd209d UTSW 8 3,928,453 (GRCm39) missense possibly damaging 0.72
R1673:Cd209d UTSW 8 3,927,113 (GRCm39) missense probably damaging 1.00
R2393:Cd209d UTSW 8 3,928,436 (GRCm39) critical splice donor site probably null
R2567:Cd209d UTSW 8 3,926,327 (GRCm39) missense probably damaging 1.00
R4907:Cd209d UTSW 8 3,927,948 (GRCm39) missense probably benign 0.01
R5349:Cd209d UTSW 8 3,928,320 (GRCm39) missense probably benign 0.00
R5768:Cd209d UTSW 8 3,921,968 (GRCm39) missense probably benign 0.05
R5949:Cd209d UTSW 8 3,927,949 (GRCm39) missense possibly damaging 0.50
R5953:Cd209d UTSW 8 3,927,979 (GRCm39) splice site probably null
R6103:Cd209d UTSW 8 3,928,304 (GRCm39) missense probably damaging 1.00
R7382:Cd209d UTSW 8 3,927,965 (GRCm39) nonsense probably null
R8714:Cd209d UTSW 8 3,923,772 (GRCm39) frame shift probably null
R8715:Cd209d UTSW 8 3,923,772 (GRCm39) frame shift probably null
R8716:Cd209d UTSW 8 3,923,772 (GRCm39) frame shift probably null
R9672:Cd209d UTSW 8 3,922,036 (GRCm39) missense probably damaging 1.00
R9784:Cd209d UTSW 8 3,926,337 (GRCm39) missense probably damaging 1.00
X0025:Cd209d UTSW 8 3,927,961 (GRCm39) nonsense probably null
Predicted Primers PCR Primer
(F):5'- TCTCCATCTCCCAGGACTGAATGAG -3'
(R):5'- GGCTCTCCAATCCTTAGCACAAGTG -3'

Sequencing Primer
(F):5'- AGGATCTCAACTTCAATTTCCCAGG -3'
(R):5'- GGTGTCCCATAAATTTGGTCAC -3'
Posted On 2014-02-11