Incidental Mutation 'R1308:Pate6'
ID 157856
Institutional Source Beutler Lab
Gene Symbol Pate6
Ensembl Gene ENSMUSG00000032108
Gene Name prostate and testis expressed 6
Synonyms mANLP2, Pate-A, 9230110F15Rik, Pate-C, D730048I06Rik, Anlp3
MMRRC Submission 039374-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.056) question?
Stock # R1308 (G1)
Quality Score 225
Status Not validated
Chromosome 9
Chromosomal Location 35699346-35701408 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 35700385 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Alanine at position 67 (T67A)
Ref Sequence ENSEMBL: ENSMUSP00000034619 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000034619] [ENSMUST00000184431]
AlphaFold Q9CQB8
Predicted Effect probably benign
Transcript: ENSMUST00000034619
AA Change: T67A

PolyPhen 2 Score 0.027 (Sensitivity: 0.95; Specificity: 0.81)
SMART Domains Protein: ENSMUSP00000034619
Gene: ENSMUSG00000032108
AA Change: T67A

DomainStartEndE-ValueType
signal peptide 1 19 N/A INTRINSIC
low complexity region 32 43 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000184431
SMART Domains Protein: ENSMUSP00000139380
Gene: ENSMUSG00000098847

DomainStartEndE-ValueType
signal peptide 1 19 N/A INTRINSIC
low complexity region 32 43 N/A INTRINSIC
low complexity region 64 81 N/A INTRINSIC
Coding Region Coverage
  • 1x: 98.8%
  • 3x: 97.9%
  • 10x: 95.2%
  • 20x: 89.3%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 20 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Angpt2 C T 8: 18,742,134 (GRCm39) W474* probably null Het
Cln6 A G 9: 62,758,143 (GRCm39) T301A probably damaging Het
G6pc2 A T 2: 69,050,570 (GRCm39) D65V probably damaging Het
Havcr1 C T 11: 46,647,097 (GRCm39) T177I probably damaging Het
Jph1 A G 1: 17,161,918 (GRCm39) I248T probably damaging Het
Lamc2 A G 1: 153,026,564 (GRCm39) L230P probably damaging Het
Lmnb1 A G 18: 56,861,547 (GRCm39) K146R probably benign Het
Map3k6 T C 4: 132,973,126 (GRCm39) S395P probably damaging Het
Myo6 G A 9: 80,152,996 (GRCm39) V210I probably damaging Het
Ntn4 C T 10: 93,543,215 (GRCm39) R314W probably damaging Het
Otoa C A 7: 120,724,666 (GRCm39) C448* probably null Het
Prkcg G C 7: 3,377,622 (GRCm39) K525N probably damaging Het
Pros1 G A 16: 62,734,228 (GRCm39) D345N probably damaging Het
Prss47 T C 13: 65,199,630 (GRCm39) H83R probably benign Het
R3hdml G T 2: 163,344,319 (GRCm39) C236F probably damaging Het
Snrnp40 C G 4: 130,271,836 (GRCm39) probably null Het
Syt12 A T 19: 4,510,763 (GRCm39) V37E probably damaging Het
Tekt2 A T 4: 126,218,711 (GRCm39) L14H probably damaging Het
Tnpo2 T C 8: 85,781,982 (GRCm39) F857S probably damaging Het
Wdr27 T C 17: 15,148,646 (GRCm39) T116A probably damaging Het
Other mutations in Pate6
AlleleSourceChrCoordTypePredicted EffectPPH Score
R1113:Pate6 UTSW 9 35,700,385 (GRCm39) missense probably benign 0.03
R1971:Pate6 UTSW 9 35,700,309 (GRCm39) missense probably benign 0.00
R2132:Pate6 UTSW 9 35,701,039 (GRCm39) splice site probably benign
R4700:Pate6 UTSW 9 35,701,021 (GRCm39) missense probably damaging 0.98
R5809:Pate6 UTSW 9 35,700,297 (GRCm39) missense probably damaging 0.99
R6662:Pate6 UTSW 9 35,701,296 (GRCm39) missense possibly damaging 0.71
Predicted Primers PCR Primer
(F):5'- GTCCCCAGGTTCTATGACTTGCAC -3'
(R):5'- CCTTCAGGATTCCAAGCACCATCTC -3'

Sequencing Primer
(F):5'- AAGTCAATGAAAGAAAATGGAGAATG -3'
(R):5'- TCATGGCTAAGTGCCTGC -3'
Posted On 2014-02-18