Incidental Mutation 'R0043:Sbf1'
| ID |
15870 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Sbf1
|
| Ensembl Gene |
ENSMUSG00000036529 |
| Gene Name |
SET binding factor 1 |
| Synonyms |
B230113C15Rik, 2610510A08Rik, Mtmr5 |
| MMRRC Submission |
038337-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly essential
(E-score: 0.521)
|
| Stock # |
R0043 (G1)
|
| Quality Score |
|
|
Status
|
Validated
|
| Chromosome |
15 |
| Chromosomal Location |
89288236-89315311 bp(-) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 89295561 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Alanine
at position 1281
(V1281A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000120725
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000123791]
[ENSMUST00000124576]
[ENSMUST00000144585]
|
| AlphaFold |
Q6ZPE2 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000123791
AA Change: V1281A
PolyPhen 2
Score 0.264 (Sensitivity: 0.91; Specificity: 0.88)
|
| SMART Domains |
Protein: ENSMUSP00000120725
Gene: ENSMUSG00000036529
AA Change: V1281A
| Domain | Start | End | E-Value | Type |
|---|
|
uDENN
|
1 |
86 |
6.68e-31 |
SMART |
|
DENN
|
128 |
310 |
4.05e-71 |
SMART |
|
dDENN
|
363 |
432 |
1.28e-18 |
SMART |
|
Pfam:SBF2
|
540 |
764 |
4.1e-110 |
PFAM |
|
GRAM
|
882 |
968 |
3.93e-12 |
SMART |
|
Pfam:Myotub-related
|
1100 |
1534 |
6.2e-114 |
PFAM |
|
low complexity region
|
1614 |
1621 |
N/A |
INTRINSIC |
|
low complexity region
|
1652 |
1666 |
N/A |
INTRINSIC |
|
low complexity region
|
1719 |
1750 |
N/A |
INTRINSIC |
|
PH
|
1762 |
1867 |
6.45e-17 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000124398
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000124576
|
| SMART Domains |
Protein: ENSMUSP00000115740
Gene: ENSMUSG00000036529
| Domain | Start | End | E-Value | Type |
|---|
|
uDENN
|
1 |
86 |
6.68e-31 |
SMART |
|
DENN
|
128 |
310 |
4.05e-71 |
SMART |
|
Pfam:dDENN
|
363 |
403 |
4.6e-9 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000144585
AA Change: V1307A
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
| SMART Domains |
Protein: ENSMUSP00000118107
Gene: ENSMUSG00000036529
AA Change: V1307A
| Domain | Start | End | E-Value | Type |
|---|
|
uDENN
|
1 |
86 |
6.68e-31 |
SMART |
|
DENN
|
128 |
310 |
4.05e-71 |
SMART |
|
dDENN
|
363 |
432 |
1.28e-18 |
SMART |
|
Pfam:SBF2
|
542 |
764 |
2.3e-108 |
PFAM |
|
GRAM
|
882 |
968 |
3.93e-12 |
SMART |
|
Pfam:Myotub-related
|
1106 |
1558 |
5.7e-93 |
PFAM |
|
low complexity region
|
1640 |
1647 |
N/A |
INTRINSIC |
|
low complexity region
|
1678 |
1692 |
N/A |
INTRINSIC |
|
low complexity region
|
1745 |
1776 |
N/A |
INTRINSIC |
|
PH
|
1788 |
1893 |
6.45e-17 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000150539
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000155146
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000175778
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000177388
|
| Meta Mutation Damage Score |
0.1155 |
| Coding Region Coverage |
- 1x: 81.2%
- 3x: 72.1%
- 10x: 49.9%
- 20x: 30.2%
|
| Validation Efficiency |
90% (56/62) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the protein-tyrosine phosphatase family. However, the encoded protein does not appear to be a catalytically active phosphatase because it lacks several amino acids in the catalytic pocket. This protein contains a Guanine nucleotide exchange factor (GEF) domain which is necessary for its role in growth and differentiation. Mutations in this gene have been associated with Charcot-Marie-Tooth disease 4B3. Pseudogenes of this gene have been defined on chromosomes 1 and 8. [provided by RefSeq, Dec 2014]
PHENOTYPE: Male homozygotes for a targeted null mutation exhibit male infertility associated with azoospermia, vacuolation of Sertoli cells, reduced spermatid formation, and eventual depletion of germ cells. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 28 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4931408C20Rik |
T |
A |
1: 26,683,802 |
I766F |
possibly damaging |
Het |
| Accs |
A |
G |
2: 93,841,885 |
Y213H |
probably benign |
Het |
| Adcy9 |
A |
G |
16: 4,289,015 |
L982P |
probably benign |
Het |
| Cntnap2 |
T |
A |
6: 46,483,983 |
V651E |
probably benign |
Het |
| Cstf3 |
A |
T |
2: 104,645,085 |
|
probably benign |
Het |
| Dnah1 |
T |
C |
14: 31,274,405 |
D2658G |
probably damaging |
Het |
| Dsg4 |
T |
C |
18: 20,452,972 |
S240P |
probably damaging |
Het |
| Dync2h1 |
C |
T |
9: 7,005,574 |
M3765I |
probably benign |
Het |
| Fam160b2 |
A |
T |
14: 70,588,661 |
S304T |
probably benign |
Het |
| Fbxw7 |
T |
C |
3: 84,972,567 |
|
probably benign |
Het |
| Gata4 |
T |
C |
14: 63,203,301 |
|
probably benign |
Het |
| Hyal1 |
T |
C |
9: 107,579,320 |
L152P |
probably benign |
Het |
| Ifi207 |
T |
A |
1: 173,729,112 |
T694S |
possibly damaging |
Het |
| Kalrn |
C |
A |
16: 34,054,906 |
G99W |
probably damaging |
Het |
| Man1a2 |
A |
T |
3: 100,587,880 |
W448R |
probably damaging |
Het |
| Mfsd6 |
A |
T |
1: 52,708,652 |
Y351* |
probably null |
Het |
| Miox |
C |
T |
15: 89,336,274 |
L189F |
possibly damaging |
Het |
| Mki67 |
T |
C |
7: 135,700,581 |
D908G |
probably benign |
Het |
| Nav3 |
A |
G |
10: 109,767,518 |
S1057P |
possibly damaging |
Het |
| Rasgef1b |
T |
C |
5: 99,243,194 |
Y102C |
probably damaging |
Het |
| Sfmbt1 |
T |
A |
14: 30,816,807 |
S794R |
probably damaging |
Het |
| Skint3 |
T |
A |
4: 112,277,623 |
V331E |
probably damaging |
Het |
| Spata6 |
A |
T |
4: 111,780,805 |
R277S |
probably damaging |
Het |
| Spink12 |
T |
C |
18: 44,107,696 |
C50R |
probably damaging |
Het |
| Trappc11 |
A |
G |
8: 47,505,575 |
|
probably benign |
Het |
| Ube2u |
G |
T |
4: 100,482,829 |
V66F |
possibly damaging |
Het |
| Usp42 |
A |
C |
5: 143,714,710 |
V1186G |
probably benign |
Het |
| Yme1l1 |
T |
C |
2: 23,187,803 |
I419T |
probably damaging |
Het |
|
| Other mutations in Sbf1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00265:Sbf1
|
APN |
15 |
89305575 |
missense |
probably damaging |
0.98 |
|
IGL01478:Sbf1
|
APN |
15 |
89299743 |
missense |
probably damaging |
0.97 |
|
IGL01533:Sbf1
|
APN |
15 |
89288716 |
missense |
probably damaging |
0.99 |
|
IGL01603:Sbf1
|
APN |
15 |
89303278 |
missense |
probably damaging |
1.00 |
|
IGL01758:Sbf1
|
APN |
15 |
89303215 |
unclassified |
probably benign |
|
|
IGL01908:Sbf1
|
APN |
15 |
89302726 |
missense |
probably damaging |
1.00 |
|
IGL02067:Sbf1
|
APN |
15 |
89289044 |
missense |
probably damaging |
1.00 |
|
IGL02089:Sbf1
|
APN |
15 |
89302505 |
nonsense |
probably null |
|
|
IGL02150:Sbf1
|
APN |
15 |
89295480 |
missense |
probably benign |
0.00 |
|
IGL02284:Sbf1
|
APN |
15 |
89305078 |
missense |
probably damaging |
1.00 |
|
IGL02367:Sbf1
|
APN |
15 |
89307572 |
missense |
probably damaging |
0.99 |
|
IGL02427:Sbf1
|
APN |
15 |
89305985 |
unclassified |
probably benign |
|
|
IGL03025:Sbf1
|
APN |
15 |
89289645 |
missense |
probably damaging |
1.00 |
|
IGL03103:Sbf1
|
APN |
15 |
89293947 |
missense |
probably damaging |
1.00 |
|
IGL03226:Sbf1
|
APN |
15 |
89289105 |
missense |
possibly damaging |
0.93 |
|
IGL03376:Sbf1
|
APN |
15 |
89289016 |
unclassified |
probably benign |
|
|
IGL03397:Sbf1
|
APN |
15 |
89288721 |
missense |
probably damaging |
1.00 |
|
R0139:Sbf1
|
UTSW |
15 |
89302498 |
missense |
probably damaging |
1.00 |
|
R0528:Sbf1
|
UTSW |
15 |
89288712 |
missense |
probably damaging |
0.99 |
|
R0624:Sbf1
|
UTSW |
15 |
89302329 |
missense |
possibly damaging |
0.68 |
|
R0759:Sbf1
|
UTSW |
15 |
89304716 |
missense |
probably damaging |
1.00 |
|
R1555:Sbf1
|
UTSW |
15 |
89305076 |
missense |
probably damaging |
1.00 |
|
R1763:Sbf1
|
UTSW |
15 |
89294425 |
missense |
probably damaging |
1.00 |
|
R2025:Sbf1
|
UTSW |
15 |
89302730 |
missense |
probably damaging |
1.00 |
|
R2207:Sbf1
|
UTSW |
15 |
89306693 |
missense |
possibly damaging |
0.88 |
|
R2844:Sbf1
|
UTSW |
15 |
89303218 |
critical splice donor site |
probably null |
|
|
R2845:Sbf1
|
UTSW |
15 |
89303218 |
critical splice donor site |
probably null |
|
|
R3788:Sbf1
|
UTSW |
15 |
89299528 |
nonsense |
probably null |
|
|
R4108:Sbf1
|
UTSW |
15 |
89288585 |
unclassified |
probably benign |
|
|
R4403:Sbf1
|
UTSW |
15 |
89293954 |
missense |
possibly damaging |
0.94 |
|
R4605:Sbf1
|
UTSW |
15 |
89303481 |
missense |
probably damaging |
1.00 |
|
R4620:Sbf1
|
UTSW |
15 |
89306926 |
missense |
probably damaging |
0.99 |
|
R4666:Sbf1
|
UTSW |
15 |
89295246 |
missense |
probably damaging |
1.00 |
|
R4696:Sbf1
|
UTSW |
15 |
89303112 |
nonsense |
probably null |
|
|
R4697:Sbf1
|
UTSW |
15 |
89315085 |
missense |
possibly damaging |
0.71 |
|
R4747:Sbf1
|
UTSW |
15 |
89302713 |
missense |
probably damaging |
1.00 |
|
R5828:Sbf1
|
UTSW |
15 |
89288634 |
missense |
probably damaging |
1.00 |
|
R5841:Sbf1
|
UTSW |
15 |
89308068 |
missense |
probably damaging |
1.00 |
|
R6185:Sbf1
|
UTSW |
15 |
89305611 |
missense |
probably damaging |
1.00 |
|
R6237:Sbf1
|
UTSW |
15 |
89293476 |
missense |
probably benign |
0.29 |
|
R6256:Sbf1
|
UTSW |
15 |
89300867 |
missense |
probably benign |
0.06 |
|
R6490:Sbf1
|
UTSW |
15 |
89304908 |
missense |
probably benign |
|
|
R6933:Sbf1
|
UTSW |
15 |
89300369 |
missense |
probably damaging |
1.00 |
|
R7806:Sbf1
|
UTSW |
15 |
89305420 |
missense |
possibly damaging |
0.52 |
|
R7921:Sbf1
|
UTSW |
15 |
89306223 |
missense |
probably damaging |
0.96 |
|
R8005:Sbf1
|
UTSW |
15 |
89294205 |
missense |
probably damaging |
0.98 |
|
R8350:Sbf1
|
UTSW |
15 |
89299509 |
missense |
probably damaging |
0.99 |
|
R8450:Sbf1
|
UTSW |
15 |
89299509 |
missense |
probably damaging |
0.99 |
|
R8509:Sbf1
|
UTSW |
15 |
89293457 |
missense |
probably damaging |
1.00 |
|
R8753:Sbf1
|
UTSW |
15 |
89295459 |
missense |
probably benign |
|
|
R8788:Sbf1
|
UTSW |
15 |
89301859 |
missense |
probably damaging |
1.00 |
|
R9182:Sbf1
|
UTSW |
15 |
89289603 |
critical splice donor site |
probably null |
|
|
R9516:Sbf1
|
UTSW |
15 |
89300539 |
missense |
probably damaging |
1.00 |
|
R9608:Sbf1
|
UTSW |
15 |
89307605 |
critical splice acceptor site |
probably null |
|
|
R9673:Sbf1
|
UTSW |
15 |
89295472 |
missense |
possibly damaging |
0.85 |
|
| Posted On |
2013-01-08 |
Incidental Mutation