Mutagenetix > Incidental Mutation

Incidental Mutation 'R1448:Cytip'

159009

Institutional Source

Beutler Lab

Gene Symbol

Cytip

Ensembl Gene

ENSMUSG00000026832

Gene Name

cytohesin 1 interacting protein

Synonyms

A130053M09Rik, Cybr, Cbp, Pscdbp

MMRRC Submission

039503-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1448 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

58019149-58085544 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 58035192 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 168 (I168T)

Ref Sequence

ENSEMBL: ENSMUSP00000028175 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028175]

AlphaFold

Q91VY6

Predicted Effect

probably damaging
Transcript: ENSMUST00000028175
AA Change: I168T

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000028175
Gene: ENSMUSG00000026832
AA Change: I168T

Domain	Start	End	E-Value	Type
PDZ	86	166	6.88e-13	SMART
low complexity region	177	188	N/A	INTRINSIC
low complexity region	240	253	N/A	INTRINSIC
low complexity region	295	306	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000131443

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144117

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146545

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148764

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151785

Coding Region Coverage

1x: 98.8%
3x: 97.8%
10x: 94.6%
20x: 87.0%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene contains 2 leucine zipper domains and a putative C-terminal nuclear targeting signal, but does not have any hydrophobic regions. This protein is expressed weakly in resting NK and T cells. The encoded protein modulates the activation of ARF genes by CYTH1. This protein interacts with CYTH1 and SNX27 proteins and may act to sequester CYTH1 protein in the cytoplasm.[provided by RefSeq, Aug 2008]
PHENOTYPE: Mice homozygous for a null allele display impaired trafficking and/or cell adhesion of immune system cells. Mice homozygous for a reporter allele show normal immune cell development and function; however, mutant hematopoietic stems cells have impaired repopulating activity. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 85 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
5330417H12Rik	T	A	7: 107,223,952 (GRCm39)		probably benign	Het
A1cf	A	T	19: 31,886,196 (GRCm39)	N35I	possibly damaging	Het
Abca2	T	C	2: 25,330,542 (GRCm39)	I1106T	possibly damaging	Het
Abca4	G	A	3: 121,956,577 (GRCm39)		probably null	Het
Adgrv1	T	C	13: 81,581,632 (GRCm39)	D4804G	probably benign	Het
Adk	T	A	14: 21,102,708 (GRCm39)	M1K	probably null	Het
Aff3	T	C	1: 38,230,364 (GRCm39)	N1006D	probably damaging	Het
Akap12	A	G	10: 4,305,475 (GRCm39)	T762A	probably benign	Het
Atosa	C	G	9: 74,917,456 (GRCm39)	S685*	probably null	Het
Atp12a	T	A	14: 56,623,296 (GRCm39)	M843K	probably damaging	Het
Bbx	T	A	16: 50,086,633 (GRCm39)	K169*	probably null	Het
Bicra	A	T	7: 15,722,284 (GRCm39)	V411E	possibly damaging	Het
Camk1d	A	T	2: 5,366,836 (GRCm39)	Y126*	probably null	Het
Cel	T	C	2: 28,446,338 (GRCm39)	Y511C	probably damaging	Het
Celf4	G	T	18: 25,636,140 (GRCm39)		probably null	Het
Clasp1	A	G	1: 118,436,646 (GRCm39)	N310S	probably benign	Het
Col6a3	T	C	1: 90,709,577 (GRCm39)	K1873R	unknown	Het
Cstf1	A	G	2: 172,217,795 (GRCm39)	D136G	probably damaging	Het
Cwc22	T	A	2: 77,741,899 (GRCm39)	E470D	probably damaging	Het
Cxcr2	A	T	1: 74,197,527 (GRCm39)	D7V	probably benign	Het
D5Ertd579e	A	G	5: 36,760,083 (GRCm39)	L1359P	probably benign	Het
Ddx25	A	C	9: 35,469,034 (GRCm39)	V26G	probably benign	Het
Dennd4a	T	A	9: 64,813,327 (GRCm39)	S1429T	possibly damaging	Het
Dmd	A	G	X: 83,892,306 (GRCm39)	D2990G	probably damaging	Het
Dop1a	C	A	9: 86,424,785 (GRCm39)		probably null	Het
Eps8	T	C	6: 137,499,852 (GRCm39)	Q209R	possibly damaging	Het
Fabp6	T	A	11: 43,486,992 (GRCm39)	I112F	probably benign	Het
Fbxw10	T	C	11: 62,738,418 (GRCm39)	V104A	possibly damaging	Het
Gp1ba	C	T	11: 70,532,253 (GRCm39)	P673L	probably damaging	Het
Grin3a	T	C	4: 49,702,804 (GRCm39)	Y894C	probably damaging	Het
Hydin	C	T	8: 111,173,217 (GRCm39)	H967Y	probably benign	Het
Ip6k3	T	C	17: 27,364,242 (GRCm39)	K269E	possibly damaging	Het
Jup	T	C	11: 100,274,026 (GRCm39)	K172E	probably damaging	Het
Katnal1	T	C	5: 148,841,486 (GRCm39)	D126G	probably benign	Het
Knl1	A	T	2: 118,898,788 (GRCm39)	K163M	probably damaging	Het
Krt17	C	T	11: 100,148,365 (GRCm39)	E359K	possibly damaging	Het
Lct	T	A	1: 128,235,559 (GRCm39)	I483F	probably damaging	Het
Loxl2	G	A	14: 69,930,489 (GRCm39)	G751D	probably damaging	Het
Ltbp4	G	A	7: 27,006,002 (GRCm39)	R1559C	possibly damaging	Het
Man2c1	T	A	9: 57,042,503 (GRCm39)	D183E	probably benign	Het
Med17	T	C	9: 15,187,139 (GRCm39)		probably null	Het
Mrgpra9	A	C	7: 46,885,561 (GRCm39)	S34R	probably benign	Het
Mrpl44	T	A	1: 79,755,677 (GRCm39)	N94K	probably damaging	Het
Nat8f1	A	G	6: 85,887,924 (GRCm39)	V12A	probably benign	Het
Nr2e3	C	A	9: 59,850,797 (GRCm39)	G354V	probably damaging	Het
Nrbp1	T	A	5: 31,403,157 (GRCm39)	I210N	probably damaging	Het
Nup155	T	C	15: 8,141,890 (GRCm39)	V94A	probably benign	Het
Or14a256	A	T	7: 86,265,569 (GRCm39)	C95S	probably damaging	Het
Or52h2	C	T	7: 103,839,082 (GRCm39)	V111I	possibly damaging	Het
Or5p76	T	C	7: 108,122,525 (GRCm39)	I211V	probably benign	Het
Or9q2	A	T	19: 13,772,140 (GRCm39)	Y278*	probably null	Het
Pcdhb10	A	T	18: 37,545,556 (GRCm39)	I211F	possibly damaging	Het
Phip	A	C	9: 82,797,476 (GRCm39)	I509S	possibly damaging	Het
Pkhd1	C	T	1: 20,655,381 (GRCm39)		probably null	Het
Psme4	T	G	11: 30,802,744 (GRCm39)	L1487R	probably damaging	Het
Ptgdr2	A	G	19: 10,917,857 (GRCm39)	S125G	probably damaging	Het
Ptpro	A	G	6: 137,418,114 (GRCm39)	K126E	probably damaging	Het
Rdh16f2	T	A	10: 127,712,794 (GRCm39)	V264E	probably benign	Het
Ric8b	C	T	10: 84,783,535 (GRCm39)	A131V	possibly damaging	Het
Rock1	A	T	18: 10,070,233 (GRCm39)	I1280N	probably damaging	Het
Rprd2	A	G	3: 95,725,888 (GRCm39)	V59A	possibly damaging	Het
Ruvbl1	T	A	6: 88,444,551 (GRCm39)	C49S	probably benign	Het
Scn2a	A	G	2: 65,514,189 (GRCm39)	N291S	probably benign	Het
Serbp1	T	A	6: 67,254,904 (GRCm39)	H325Q	probably damaging	Het
Shf	G	A	2: 122,199,163 (GRCm39)	P51S	probably damaging	Het
Shisal2b	T	C	13: 104,982,470 (GRCm39)	I151V	probably benign	Het
Slitrk3	G	A	3: 72,957,674 (GRCm39)	T366I	probably damaging	Het
Spryd3	A	T	15: 102,026,827 (GRCm39)	H307Q	possibly damaging	Het
Spx	A	T	6: 142,364,239 (GRCm39)	D100V	probably benign	Het
Surf4	A	G	2: 26,814,476 (GRCm39)	F142L	probably damaging	Het
Syne2	T	A	12: 76,067,099 (GRCm39)		probably null	Het
Syne2	T	C	12: 76,098,952 (GRCm39)	M5278T	possibly damaging	Het
Thap12	T	C	7: 98,365,230 (GRCm39)	V466A	probably benign	Het
Thap3	T	C	4: 152,067,673 (GRCm39)	K135R	possibly damaging	Het
Tmem131	G	T	1: 36,866,439 (GRCm39)	D448E	probably benign	Het
Tmem63b	C	G	17: 45,989,904 (GRCm39)	R88P	possibly damaging	Het
Trim43a	G	T	9: 88,464,146 (GRCm39)	C19F	probably damaging	Het
Trp63	C	T	16: 25,707,870 (GRCm39)	P526L	possibly damaging	Het
Ubqln3	T	C	7: 103,791,997 (GRCm39)	D31G	probably damaging	Het
Utp14b	C	A	1: 78,643,162 (GRCm39)	N353K	probably damaging	Het
Vmn1r40	A	G	6: 89,691,558 (GRCm39)	K125R	probably damaging	Het
Vmn2r1	A	G	3: 64,008,734 (GRCm39)	Y471C	probably damaging	Het
Vmn2r13	A	G	5: 109,322,001 (GRCm39)	I232T	probably damaging	Het
Zfp263	A	C	16: 3,564,323 (GRCm39)	E204D	probably benign	Het
Zfp865	A	T	7: 5,032,278 (GRCm39)	K88*	probably null	Het

Other mutations in Cytip

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01635:Cytip	APN	2	58,038,243 (GRCm39)	missense	probably damaging	1.00
IGL01670:Cytip	APN	2	58,023,785 (GRCm39)	missense	probably damaging	1.00
IGL02184:Cytip	APN	2	58,023,750 (GRCm39)	missense	probably damaging	1.00
IGL02271:Cytip	APN	2	58,023,872 (GRCm39)	nonsense	probably null
IGL02468:Cytip	APN	2	58,024,025 (GRCm39)	missense	probably benign	0.08
R0079:Cytip	UTSW	2	58,050,006 (GRCm39)	missense	probably benign	0.37
R0304:Cytip	UTSW	2	58,038,258 (GRCm39)	missense	possibly damaging	0.87
R0612:Cytip	UTSW	2	58,024,202 (GRCm39)	missense	possibly damaging	0.46
R1822:Cytip	UTSW	2	58,024,158 (GRCm39)	missense	probably benign	0.00
R1954:Cytip	UTSW	2	58,038,265 (GRCm39)	missense	possibly damaging	0.75
R4401:Cytip	UTSW	2	58,023,947 (GRCm39)	missense	probably benign	0.01
R4578:Cytip	UTSW	2	58,050,024 (GRCm39)	missense	possibly damaging	0.95
R5101:Cytip	UTSW	2	58,037,911 (GRCm39)	missense	probably damaging	1.00
R7104:Cytip	UTSW	2	58,049,986 (GRCm39)	missense	probably benign	0.00
R7703:Cytip	UTSW	2	58,037,920 (GRCm39)	missense	probably damaging	1.00
R7966:Cytip	UTSW	2	58,037,944 (GRCm39)	missense	probably damaging	1.00
R8492:Cytip	UTSW	2	58,027,869 (GRCm39)	critical splice donor site	probably null
R8711:Cytip	UTSW	2	58,041,135 (GRCm39)	missense	probably damaging	0.99
R8862:Cytip	UTSW	2	58,037,887 (GRCm39)	missense	probably benign	0.25
R9548:Cytip	UTSW	2	58,041,141 (GRCm39)	missense	probably damaging	0.99
Z1176:Cytip	UTSW	2	58,024,049 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TTGACCCGTCGGTAGCTTAGATGC -3'
(R):5'- TGCCATTAGCACACAGTGCCTTC -3'

Sequencing Primer
(F):5'- CATCCTGACATTTCCCCTTCAAG -3'
(R):5'- CCACTGTTGTTCAGAAATTTGGC -3'

Posted On

2014-03-14