Incidental Mutation 'R1398:Cnot11'
ID160209
Institutional Source Beutler Lab
Gene Symbol Cnot11
Ensembl Gene ENSMUSG00000003135
Gene NameCCR4-NOT transcription complex, subunit 11
Synonyms2410015L18Rik, D1Bwg0212e
MMRRC Submission 039460-MU
Accession Numbers
Is this an essential gene? Probably essential (E-score: 0.947) question?
Stock #R1398 (G1)
Quality Score225
Status Validated
Chromosome1
Chromosomal Location39534992-39546889 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to G at 39545180 bp
ZygosityHeterozygous
Amino Acid Change Arginine to Glycine at position 478 (R478G)
Ref Sequence ENSEMBL: ENSMUSP00000125638 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000003219] [ENSMUST00000161515] [ENSMUST00000195567]
Predicted Effect probably damaging
Transcript: ENSMUST00000003219
AA Change: R478G

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000003219
Gene: ENSMUSG00000003135
AA Change: R478G

DomainStartEndE-ValueType
low complexity region 25 55 N/A INTRINSIC
low complexity region 62 73 N/A INTRINSIC
low complexity region 234 257 N/A INTRINSIC
Pfam:DUF2363 366 490 1.7e-58 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000104516
Predicted Effect noncoding transcript
Transcript: ENSMUST00000146314
Predicted Effect noncoding transcript
Transcript: ENSMUST00000160145
Predicted Effect probably damaging
Transcript: ENSMUST00000161515
AA Change: R478G

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000125638
Gene: ENSMUSG00000003135
AA Change: R478G

DomainStartEndE-ValueType
low complexity region 25 55 N/A INTRINSIC
low complexity region 62 73 N/A INTRINSIC
low complexity region 234 257 N/A INTRINSIC
Pfam:DUF2363 366 491 3.3e-57 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000195567
SMART Domains Protein: ENSMUSP00000141388
Gene: ENSMUSG00000003135

DomainStartEndE-ValueType
Pfam:DUF2363 40 148 3.4e-44 PFAM
Meta Mutation Damage Score 0.8373 question?
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.1%
  • 10x: 95.6%
  • 20x: 90.7%
Validation Efficiency 96% (75/78)
Allele List at MGI
Other mutations in this stock
Total: 74 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4931408C20Rik G T 1: 26,685,341 Q253K possibly damaging Het
9330182L06Rik A G 5: 9,380,297 Y69C probably damaging Het
Abca17 T C 17: 24,328,537 K288E probably damaging Het
Aldh3a2 T C 11: 61,256,736 probably null Het
Anks1b A G 10: 90,050,029 T196A probably damaging Het
Anks6 T A 4: 47,044,926 T327S possibly damaging Het
Bdh2 T C 3: 135,295,296 probably benign Het
C4b T A 17: 34,730,719 probably benign Het
Cacna2d1 G A 5: 16,357,766 V847I possibly damaging Het
Cadps G T 14: 12,449,822 T1129K probably damaging Het
Cdc45 A G 16: 18,781,971 probably benign Het
Cep63 A T 9: 102,603,086 probably benign Het
Chil4 T A 3: 106,219,509 probably null Het
Cyp2c67 A G 19: 39,638,625 S254P probably damaging Het
Dnah11 T A 12: 118,057,106 K87* probably null Het
Dpy19l2 T A 9: 24,581,263 probably benign Het
Dsc1 A T 18: 20,088,336 I694N probably damaging Het
Ehd4 A T 2: 120,127,600 I168K probably benign Het
Eif4e A T 3: 138,546,375 N25Y probably damaging Het
Eme2 G A 17: 24,892,918 S263F probably damaging Het
Fam160b1 T A 19: 57,372,926 probably benign Het
Fgfrl1 T A 5: 108,706,281 probably benign Het
Gm3159 T A 14: 4,398,586 Y92* probably null Het
Gm4922 T A 10: 18,783,748 S409C possibly damaging Het
Gmcl1 G A 6: 86,714,262 probably benign Het
Grsf1 A G 5: 88,665,847 Y231H probably benign Het
Heatr4 T A 12: 83,967,621 H614L possibly damaging Het
Hoxa13 C G 6: 52,260,647 probably benign Het
Hoxa13 G C 6: 52,260,648 probably benign Het
Isg20l2 C A 3: 87,938,754 L325I probably benign Het
Kalrn A G 16: 34,212,820 Y879H probably damaging Het
Kcnk10 C A 12: 98,436,226 W318L probably damaging Het
Kctd1 T C 18: 15,062,597 E323G possibly damaging Het
Kif4 G T X: 100,689,097 A492S probably benign Het
Krtap4-1 T C 11: 99,627,732 T151A unknown Het
Ldlr A T 9: 21,739,542 Q449L probably benign Het
Lepr T A 4: 101,792,019 D872E probably damaging Het
Lgals12 C T 19: 7,603,957 probably benign Het
Lrig3 C T 10: 126,003,088 P488L probably benign Het
Lrrc4b A C 7: 44,462,452 I583L probably benign Het
Lyst T C 13: 13,740,536 S3272P possibly damaging Het
March2 T C 17: 33,696,122 H166R probably damaging Het
Mtbp C A 15: 55,577,537 Y373* probably null Het
Myh2 C T 11: 67,185,287 H767Y probably benign Het
Ncam1 G A 9: 49,517,589 probably benign Het
Neb T A 2: 52,289,646 N1282Y probably damaging Het
Nectin3 A G 16: 46,448,756 Y428H possibly damaging Het
Nrros A T 16: 32,143,144 I649N probably damaging Het
Nvl A T 1: 181,097,126 probably benign Het
Olfr495 T A 7: 108,395,501 V127E probably damaging Het
Pms1 A T 1: 53,207,276 V368E possibly damaging Het
Polq T A 16: 37,062,495 S1674T possibly damaging Het
Ppp1r21 T C 17: 88,542,879 V31A probably damaging Het
Rev3l T A 10: 39,821,583 V692E probably benign Het
Robo4 T C 9: 37,408,076 probably null Het
Rps6kc1 T C 1: 190,800,015 I597V probably damaging Het
Rtel1 T A 2: 181,335,865 probably null Het
Scn9a A G 2: 66,484,586 M1587T probably benign Het
Sec31b T A 19: 44,523,665 I597F probably benign Het
Skint5 T C 4: 113,779,071 N650S unknown Het
Slc22a28 G T 19: 8,130,202 S167* probably null Het
Slfn1 T A 11: 83,121,142 M28K probably damaging Het
Smc6 T C 12: 11,271,879 probably benign Het
Sox8 T C 17: 25,567,883 H282R probably benign Het
Syngr3 C A 17: 24,686,440 V161L probably benign Het
Trak1 C T 9: 121,454,359 S397F probably damaging Het
Uso1 C T 5: 92,181,468 A405V probably benign Het
Uvrag G T 7: 99,065,820 Y190* probably null Het
Vps13d A T 4: 145,099,983 L1726Q probably null Het
Vwf A T 6: 125,603,457 Q556L probably benign Het
Wdr70 T A 15: 8,035,844 M246L probably benign Het
Yipf3 T C 17: 46,251,446 F285S probably damaging Het
Zdhhc13 G A 7: 48,826,873 G579R probably damaging Het
Zdhhc18 G C 4: 133,627,297 F125L probably benign Het
Other mutations in Cnot11
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02337:Cnot11 APN 1 39544883 splice site probably benign
R1087:Cnot11 UTSW 1 39540058 missense probably benign 0.18
R3433:Cnot11 UTSW 1 39545187 splice site probably null
R4134:Cnot11 UTSW 1 39537548 missense probably benign 0.11
R4633:Cnot11 UTSW 1 39536218 missense probably benign 0.00
R5856:Cnot11 UTSW 1 39537453 missense probably benign 0.06
R6841:Cnot11 UTSW 1 39540067 nonsense probably null
R6931:Cnot11 UTSW 1 39539921 missense probably damaging 0.99
R7290:Cnot11 UTSW 1 39539939 nonsense probably null
Predicted Primers PCR Primer
(F):5'- TGATCACAGGGAAGGCTTGACTTCAT -3'
(R):5'- TCCCAAGTTCTCACCAAAATTCATCCAT -3'

Sequencing Primer
(F):5'- AGGGAAGGCTTGACTTCATGATTAC -3'
(R):5'- CATGGGAAACATCTAGGAAAAAGG -3'
Posted On2014-03-14