Mutagenetix > Incidental Mutation

Incidental Mutation 'R1398:Rps6kc1'

160212

Institutional Source

Beutler Lab

Gene Symbol

Rps6kc1

Ensembl Gene

ENSMUSG00000089872

Gene Name

ribosomal protein S6 kinase polypeptide 1

Synonyms

B130003F20Rik, RPK118

MMRRC Submission

039460-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1398 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

190505076-190645207 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 190532212 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Valine at position 597 (I597V)

Ref Sequence

ENSEMBL: ENSMUSP00000061769 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000061611] [ENSMUST00000159367] [ENSMUST00000159624]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000061611
AA Change: I597V

PolyPhen 2 Score 0.985 (Sensitivity: 0.74; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000061769
Gene: ENSMUSG00000089872
AA Change: I597V

Domain	Start	End	E-Value	Type
PX	9	128	1.26e-13	SMART
low complexity region	160	175	N/A	INTRINSIC
low complexity region	198	211	N/A	INTRINSIC
MIT	235	313	1.12e-20	SMART
low complexity region	317	332	N/A	INTRINSIC
SCOP:d1apme_	347	417	2e-5	SMART
low complexity region	443	454	N/A	INTRINSIC
low complexity region	576	587	N/A	INTRINSIC
low complexity region	669	681	N/A	INTRINSIC
Pfam:Pkinase	863	1046	4.4e-26	PFAM
Pfam:Pkinase_Tyr	876	1032	5.5e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000159367

SMART Domains

Protein: ENSMUSP00000124383
Gene: ENSMUSG00000089872

Domain	Start	End	E-Value	Type
Blast:PX	9	50	4e-22	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000159624

SMART Domains

Protein: ENSMUSP00000125010
Gene: ENSMUSG00000089872

Domain	Start	End	E-Value	Type
PX	9	128	1.26e-13	SMART
low complexity region	160	175	N/A	INTRINSIC
low complexity region	198	211	N/A	INTRINSIC
Pfam:MIT	238	299	6.9e-13	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000159823

Predicted Effect

probably benign
Transcript: ENSMUST00000160889

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000162500

Meta Mutation Damage Score

0.0876

Coding Region Coverage

1x: 99.0%
3x: 98.1%
10x: 95.6%
20x: 90.7%

Validation Efficiency

96% (75/78)

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca17	T	C	17: 24,547,511 (GRCm39)	K288E	probably damaging	Het
Aldh3a2	T	C	11: 61,147,562 (GRCm39)		probably null	Het
Anks1b	A	G	10: 89,885,891 (GRCm39)	T196A	probably damaging	Het
Anks6	T	A	4: 47,044,926 (GRCm39)	T327S	possibly damaging	Het
Bdh2	T	C	3: 135,001,057 (GRCm39)		probably benign	Het
C4b	T	A	17: 34,949,693 (GRCm39)		probably benign	Het
Cacna2d1	G	A	5: 16,562,764 (GRCm39)	V847I	possibly damaging	Het
Cadps	G	T	14: 12,449,822 (GRCm38)	T1129K	probably damaging	Het
Cdc45	A	G	16: 18,600,721 (GRCm39)		probably benign	Het
Cep63	A	T	9: 102,480,285 (GRCm39)		probably benign	Het
Chil4	T	A	3: 106,126,825 (GRCm39)		probably null	Het
Cnot11	A	G	1: 39,584,261 (GRCm39)	R478G	probably damaging	Het
Cyp2c67	A	G	19: 39,627,069 (GRCm39)	S254P	probably damaging	Het
Dnah11	T	A	12: 118,020,841 (GRCm39)	K87*	probably null	Het
Dpy19l2	T	A	9: 24,492,559 (GRCm39)		probably benign	Het
Dsc1	A	T	18: 20,221,393 (GRCm39)	I694N	probably damaging	Het
Ehd4	A	T	2: 119,958,081 (GRCm39)	I168K	probably benign	Het
Eif4e	A	T	3: 138,252,136 (GRCm39)	N25Y	probably damaging	Het
Elapor2	A	G	5: 9,430,297 (GRCm39)	Y69C	probably damaging	Het
Eme2	G	A	17: 25,111,892 (GRCm39)	S263F	probably damaging	Het
Fgfrl1	T	A	5: 108,854,147 (GRCm39)		probably benign	Het
Fhip2a	T	A	19: 57,361,358 (GRCm39)		probably benign	Het
Gm3159	T	A	14: 4,398,586 (GRCm38)	Y92*	probably null	Het
Gm4922	T	A	10: 18,659,496 (GRCm39)	S409C	possibly damaging	Het
Gmcl1	G	A	6: 86,691,244 (GRCm39)		probably benign	Het
Grsf1	A	G	5: 88,813,706 (GRCm39)	Y231H	probably benign	Het
Heatr4	T	A	12: 84,014,395 (GRCm39)	H614L	possibly damaging	Het
Hoxa13	C	G	6: 52,260,647 (GRCm38)		probably benign	Het
Hoxa13	G	C	6: 52,260,648 (GRCm38)		probably benign	Het
Isg20l2	C	A	3: 87,846,061 (GRCm39)	L325I	probably benign	Het
Kalrn	A	G	16: 34,033,190 (GRCm39)	Y879H	probably damaging	Het
Kcnk10	C	A	12: 98,402,485 (GRCm39)	W318L	probably damaging	Het
Kctd1	T	C	18: 15,195,654 (GRCm39)	E323G	possibly damaging	Het
Kif4	G	T	X: 99,732,703 (GRCm39)	A492S	probably benign	Het
Krtap4-1	T	C	11: 99,518,558 (GRCm39)	T151A	unknown	Het
Ldlr	A	T	9: 21,650,838 (GRCm39)	Q449L	probably benign	Het
Lepr	T	A	4: 101,649,216 (GRCm39)	D872E	probably damaging	Het
Lgals12	C	T	19: 7,581,322 (GRCm39)		probably benign	Het
Lrig3	C	T	10: 125,838,957 (GRCm39)	P488L	probably benign	Het
Lrrc4b	A	C	7: 44,111,876 (GRCm39)	I583L	probably benign	Het
Lyst	T	C	13: 13,915,121 (GRCm39)	S3272P	possibly damaging	Het
Marchf2	T	C	17: 33,915,096 (GRCm39)	H166R	probably damaging	Het
Mtbp	C	A	15: 55,440,933 (GRCm39)	Y373*	probably null	Het
Myh2	C	T	11: 67,076,113 (GRCm39)	H767Y	probably benign	Het
Ncam1	G	A	9: 49,428,889 (GRCm39)		probably benign	Het
Neb	T	A	2: 52,179,658 (GRCm39)	N1282Y	probably damaging	Het
Nectin3	A	G	16: 46,269,119 (GRCm39)	Y428H	possibly damaging	Het
Nrros	A	T	16: 31,961,962 (GRCm39)	I649N	probably damaging	Het
Nvl	A	T	1: 180,924,691 (GRCm39)		probably benign	Het
Or5p70	T	A	7: 107,994,708 (GRCm39)	V127E	probably damaging	Het
Pms1	A	T	1: 53,246,435 (GRCm39)	V368E	possibly damaging	Het
Polq	T	A	16: 36,882,857 (GRCm39)	S1674T	possibly damaging	Het
Ppp1r21	T	C	17: 88,850,307 (GRCm39)	V31A	probably damaging	Het
Rev3l	T	A	10: 39,697,579 (GRCm39)	V692E	probably benign	Het
Robo4	T	C	9: 37,319,372 (GRCm39)		probably null	Het
Rtel1	T	A	2: 180,977,658 (GRCm39)		probably null	Het
Scn9a	A	G	2: 66,314,930 (GRCm39)	M1587T	probably benign	Het
Sec31b	T	A	19: 44,512,104 (GRCm39)	I597F	probably benign	Het
Skint5	T	C	4: 113,636,268 (GRCm39)	N650S	unknown	Het
Slc22a28	G	T	19: 8,107,566 (GRCm39)	S167*	probably null	Het
Slfn1	T	A	11: 83,011,968 (GRCm39)	M28K	probably damaging	Het
Smc6	T	C	12: 11,321,880 (GRCm39)		probably benign	Het
Sox8	T	C	17: 25,786,857 (GRCm39)	H282R	probably benign	Het
Spata31e2	G	T	1: 26,724,422 (GRCm39)	Q253K	possibly damaging	Het
Syngr3	C	A	17: 24,905,414 (GRCm39)	V161L	probably benign	Het
Trak1	C	T	9: 121,283,425 (GRCm39)	S397F	probably damaging	Het
Uso1	C	T	5: 92,329,327 (GRCm39)	A405V	probably benign	Het
Uvrag	G	T	7: 98,715,027 (GRCm39)	Y190*	probably null	Het
Vps13d	A	T	4: 144,826,553 (GRCm39)	L1726Q	probably null	Het
Vwf	A	T	6: 125,580,420 (GRCm39)	Q556L	probably benign	Het
Wdr70	T	A	15: 8,065,325 (GRCm39)	M246L	probably benign	Het
Yipf3	T	C	17: 46,562,372 (GRCm39)	F285S	probably damaging	Het
Zdhhc13	G	A	7: 48,476,621 (GRCm39)	G579R	probably damaging	Het
Zdhhc18	G	C	4: 133,354,608 (GRCm39)	F125L	probably benign	Het

Other mutations in Rps6kc1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01296:Rps6kc1	APN	1	190,505,875 (GRCm39)	missense	probably damaging	1.00
IGL01310:Rps6kc1	APN	1	190,515,822 (GRCm39)	missense	probably benign	0.45
IGL01331:Rps6kc1	APN	1	190,532,549 (GRCm39)	missense	possibly damaging	0.49
IGL01551:Rps6kc1	APN	1	190,505,837 (GRCm39)	missense	possibly damaging	0.70
IGL01665:Rps6kc1	APN	1	190,643,854 (GRCm39)	missense	possibly damaging	0.66
IGL02178:Rps6kc1	APN	1	190,604,033 (GRCm39)	missense	possibly damaging	0.63
IGL02550:Rps6kc1	APN	1	190,604,059 (GRCm39)	missense	probably damaging	1.00
IGL02986:Rps6kc1	APN	1	190,566,258 (GRCm39)	missense	probably damaging	1.00
IGL03010:Rps6kc1	APN	1	190,643,803 (GRCm39)	nonsense	probably null
IGL03087:Rps6kc1	APN	1	190,603,908 (GRCm39)	missense	probably damaging	1.00
IGL03130:Rps6kc1	APN	1	190,532,008 (GRCm39)	missense	probably damaging	1.00
IGL03264:Rps6kc1	APN	1	190,604,026 (GRCm39)	missense	probably benign
IGL03386:Rps6kc1	APN	1	190,531,767 (GRCm39)	missense	probably damaging	0.97
R0184:Rps6kc1	UTSW	1	190,531,290 (GRCm39)	missense	probably null	1.00
R0280:Rps6kc1	UTSW	1	190,541,197 (GRCm39)	missense	probably damaging	1.00
R0482:Rps6kc1	UTSW	1	190,531,627 (GRCm39)	missense	probably benign	0.00
R0651:Rps6kc1	UTSW	1	190,531,693 (GRCm39)	missense	possibly damaging	0.51
R0785:Rps6kc1	UTSW	1	190,541,142 (GRCm39)	missense	probably damaging	1.00
R1428:Rps6kc1	UTSW	1	190,530,923 (GRCm39)	missense	probably damaging	1.00
R1484:Rps6kc1	UTSW	1	190,531,672 (GRCm39)	missense	possibly damaging	0.63
R1536:Rps6kc1	UTSW	1	190,603,965 (GRCm39)	missense	possibly damaging	0.89
R1709:Rps6kc1	UTSW	1	190,532,533 (GRCm39)	missense	possibly damaging	0.72
R2060:Rps6kc1	UTSW	1	190,542,305 (GRCm39)	missense	possibly damaging	0.94
R2153:Rps6kc1	UTSW	1	190,530,920 (GRCm39)	missense	probably damaging	1.00
R2871:Rps6kc1	UTSW	1	190,631,766 (GRCm39)	missense	probably damaging	1.00
R2871:Rps6kc1	UTSW	1	190,631,766 (GRCm39)	missense	probably damaging	1.00
R4177:Rps6kc1	UTSW	1	190,532,616 (GRCm39)	missense	possibly damaging	0.92
R4231:Rps6kc1	UTSW	1	190,541,097 (GRCm39)	missense	probably damaging	1.00
R4401:Rps6kc1	UTSW	1	190,532,155 (GRCm39)	missense	probably benign	0.32
R4402:Rps6kc1	UTSW	1	190,530,802 (GRCm39)	intron	probably benign
R4785:Rps6kc1	UTSW	1	190,482,385 (GRCm39)	missense	probably benign	0.00
R4810:Rps6kc1	UTSW	1	190,541,160 (GRCm39)	missense	probably damaging	1.00
R4858:Rps6kc1	UTSW	1	190,532,515 (GRCm39)	missense	probably damaging	1.00
R4887:Rps6kc1	UTSW	1	190,530,891 (GRCm39)	missense	probably benign	0.13
R4976:Rps6kc1	UTSW	1	190,530,924 (GRCm39)	missense	probably damaging	0.99
R5134:Rps6kc1	UTSW	1	190,505,845 (GRCm39)	missense	probably damaging	1.00
R5217:Rps6kc1	UTSW	1	190,515,802 (GRCm39)	missense	probably damaging	1.00
R5350:Rps6kc1	UTSW	1	190,531,663 (GRCm39)	missense	probably benign
R5952:Rps6kc1	UTSW	1	190,617,617 (GRCm39)	missense	probably benign	0.05
R5979:Rps6kc1	UTSW	1	190,532,632 (GRCm39)	missense	probably damaging	1.00
R6597:Rps6kc1	UTSW	1	190,482,381 (GRCm39)	missense	probably benign	0.20
R7024:Rps6kc1	UTSW	1	190,532,407 (GRCm39)	missense	probably benign	0.00
R7192:Rps6kc1	UTSW	1	190,532,556 (GRCm39)	missense	probably damaging	0.98
R7423:Rps6kc1	UTSW	1	190,531,293 (GRCm39)	missense	probably damaging	1.00
R7493:Rps6kc1	UTSW	1	190,532,254 (GRCm39)	missense	probably benign	0.26
R7718:Rps6kc1	UTSW	1	190,604,022 (GRCm39)	missense	probably benign	0.13
R7783:Rps6kc1	UTSW	1	190,505,851 (GRCm39)	missense	probably benign	0.39
R7794:Rps6kc1	UTSW	1	190,515,825 (GRCm39)	missense	probably benign	0.05
R7972:Rps6kc1	UTSW	1	190,531,321 (GRCm39)	missense	probably benign	0.14
R9236:Rps6kc1	UTSW	1	190,532,200 (GRCm39)	missense	probably damaging	1.00
R9370:Rps6kc1	UTSW	1	190,531,222 (GRCm39)	missense	probably damaging	1.00
R9586:Rps6kc1	UTSW	1	190,514,774 (GRCm39)	missense	probably benign	0.03
R9756:Rps6kc1	UTSW	1	190,604,021 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- AACTGGGACGGAATCATCTGAGCC -3'
(R):5'- GAGGAGTCTGTTATGCAGCCTGAAG -3'

Sequencing Primer
(F):5'- TCAAGACTCTGAGAAGGGCT -3'
(R):5'- TTATGCAGCCTGAAGGGGAC -3'

Posted On

2014-03-14