Mutagenetix > Incidental Mutations

Incidental Mutation 'R1452:Mcoln2'

161056

Institutional Source

Beutler Lab

Gene Symbol

Mcoln2

Ensembl Gene

ENSMUSG00000011008

Gene Name

mucolipin 2

Synonyms

mucolipidin 2, TRPML2, 3300002C04Rik

MMRRC Submission

039507-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.086) question?

Stock #

R1452 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

146149833-146195513 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 146181814 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Serine at position 329 (T329S)

Ref Sequence

ENSEMBL: ENSMUSP00000096125 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000011152] [ENSMUST00000098524]

AlphaFold

Q8K595

Predicted Effect

possibly damaging
Transcript: ENSMUST00000011152
AA Change: T357S

PolyPhen 2 Score 0.922 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000011152
Gene: ENSMUSG00000011008
AA Change: T357S

Domain	Start	End	E-Value	Type
transmembrane domain	292	314	N/A	INTRINSIC
transmembrane domain	340	362	N/A	INTRINSIC
Pfam:PKD_channel	370	513	5.8e-12	PFAM
low complexity region	546	558	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000098524
AA Change: T329S

PolyPhen 2 Score 0.922 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000096125
Gene: ENSMUSG00000011008
AA Change: T329S

Domain	Start	End	E-Value	Type
transmembrane domain	264	286	N/A	INTRINSIC
transmembrane domain	312	334	N/A	INTRINSIC
Pfam:PKD_channel	343	485	6.9e-11	PFAM
low complexity region	518	530	N/A	INTRINSIC

Meta Mutation Damage Score

0.2280

Coding Region Coverage

1x: 98.9%
3x: 97.8%
10x: 94.8%
20x: 87.5%

Validation Efficiency

99% (70/71)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Mucolipins constitute a family of cation channel proteins with homology to the transient receptor potential superfamily. In mammals, the mucolipin family includes 3 members, MCOLN1 (MIM 605248), MCOLN2, and MCOLN3 (MIM 607400), that exhibit a common 6-membrane-spanning topology. Homologs of mammalian mucolipins exist in Drosophila and C. elegans. Mutations in the human MCOLN1 gene cause mucolipodosis IV (MIM 262650) (Karacsonyi et al., 2007 [PubMed 17662026]).[supplied by OMIM, Sep 2009]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit reduced chemokine production in bone marrow-derived macrophages and impaired recruitment of peripheral macrophages in response to i.p. injections of LPS or live bacteria. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310007B03Rik	T	C	1: 93,152,939	Y415C	probably damaging	Het
2810474O19Rik	A	T	6: 149,326,632	K392I	probably damaging	Het
A2m	A	G	6: 121,678,056	I1446M	probably benign	Het
Acaca	T	A	11: 84,295,059		probably benign	Het
Adgre4	A	T	17: 55,784,996	E85D	probably benign	Het
Akt3	A	T	1: 177,131,067	Y26N	possibly damaging	Het
Arl15	T	C	13: 113,967,783	V132A	probably benign	Het
Atp6v1h	A	G	1: 5,098,137		probably benign	Het
Atrip	T	A	9: 109,072,659	D110V	probably damaging	Het
Bahcc1	T	G	11: 120,282,239		probably benign	Het
Cd53	C	T	3: 106,768,959	G31S	probably damaging	Het
Cdk14	T	C	5: 4,888,927	S404G	possibly damaging	Het
Cers3	A	T	7: 66,783,404	K156N	probably damaging	Het
Colgalt2	C	A	1: 152,504,153	L448M	probably damaging	Het
Cox15	G	T	19: 43,746,905	T141K	probably damaging	Het
Csnk2a2	C	T	8: 95,457,375		probably benign	Het
Cyp2b10	A	T	7: 25,925,388		probably benign	Het
Cyp2c55	A	G	19: 39,011,090	Y80C	probably damaging	Het
Depdc1a	A	G	3: 159,526,691	Y693C	possibly damaging	Het
Des	T	C	1: 75,363,477	S343P	probably damaging	Het
Dync1i2	T	C	2: 71,249,863		probably benign	Het
Eif3m	T	A	2: 105,006,777	Q199L	probably damaging	Het
Emsy	G	T	7: 98,600,674	T802K	probably damaging	Het
Endov	A	G	11: 119,491,825	T33A	probably damaging	Het
Epb41l5	G	A	1: 119,549,166	T728I	probably damaging	Het
Fbxo39	A	G	11: 72,318,402	I363V	probably benign	Het
Gm8674	C	T	13: 49,900,517		noncoding transcript	Het
Gm9733	G	T	3: 15,332,152	T24K	unknown	Het
Il6st	T	A	13: 112,481,464	N137K	possibly damaging	Het
Inf2	A	G	12: 112,601,344	N136S	probably damaging	Het
Iqub	A	T	6: 24,491,559	I376N	probably benign	Het
Kansl3	A	G	1: 36,354,793		probably benign	Het
Kbtbd2	A	T	6: 56,781,924	H71Q	probably damaging	Het
Lgals8	G	T	13: 12,453,327	Y140*	probably null	Het
Macf1	T	A	4: 123,493,998	I924L	probably benign	Het
Mex3d	A	T	10: 80,381,520	L621Q	probably damaging	Het
Mut	A	G	17: 40,937,468		probably benign	Het
Ncor1	T	C	11: 62,334,631	H1038R	probably damaging	Het
Neb	A	G	2: 52,271,297		probably null	Het
Ngrn	A	G	7: 80,264,772	T224A	probably benign	Het
Nin	G	A	12: 70,017,650	R2019*	probably null	Het
Nphp4	C	G	4: 152,547,018	Q792E	probably damaging	Het
Olfr1047	T	A	2: 86,228,455	N172I	probably damaging	Het
Olfr1166	C	T	2: 88,124,311	V225I	probably benign	Het
Olfr140	C	T	2: 90,051,671	V218I	possibly damaging	Het
Olfr373	C	T	8: 72,100,176	Q139*	probably null	Het
Olfr70	C	T	4: 43,696,823	V117M	probably benign	Het
Pde4dip	C	A	3: 97,724,102	V1164L	probably damaging	Het
Plppr1	A	G	4: 49,301,067		probably benign	Het
Pole2	G	A	12: 69,207,929	L381F	probably benign	Het
Ppp2r5e	A	G	12: 75,469,536		probably benign	Het
Prim2	T	A	1: 33,630,404	E163D	probably benign	Het
Prrc2b	A	T	2: 32,194,985	D296V	probably damaging	Het
Pter	A	G	2: 12,978,621		probably benign	Het
Robo2	C	A	16: 73,961,910	V662L	probably damaging	Het
Slco1b2	A	T	6: 141,672,200	I424F	probably benign	Het
Snx29	A	T	16: 11,631,471	H260L	probably damaging	Het
Stil	A	G	4: 115,039,195	N959S	probably benign	Het
Taar8c	A	T	10: 24,101,610	D101E	probably benign	Het
Tns2	C	T	15: 102,108,934	R281C	probably damaging	Het
Trpc6	G	A	9: 8,653,147	M573I	probably damaging	Het
Tsr1	A	T	11: 74,899,599	D171V	probably benign	Het
Ube4b	T	C	4: 149,371,169	T348A	probably damaging	Het
Vmn1r85	A	T	7: 13,084,881	I112N	probably damaging	Het
Vps36	A	G	8: 22,218,210		probably null	Het
Wdfy3	G	A	5: 101,937,738	A630V	possibly damaging	Het
Wdsub1	A	T	2: 59,876,800	D14E	probably null	Het
Ylpm1	T	C	12: 85,030,383	I1294T	possibly damaging	Het
Zdhhc17	A	G	10: 110,955,075	F378L	probably benign	Het

Other mutations in Mcoln2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01309:Mcoln2	APN	3	146163527	splice site	probably benign
IGL01370:Mcoln2	APN	3	146181830	missense	possibly damaging	0.71
IGL01479:Mcoln2	APN	3	146175652	splice site	probably benign
IGL02629:Mcoln2	APN	3	146170044	missense	probably benign	0.28
R0010:Mcoln2	UTSW	3	146183561	missense	probably damaging	0.99
R0010:Mcoln2	UTSW	3	146183561	missense	probably damaging	0.99
R0039:Mcoln2	UTSW	3	146183561	missense	probably damaging	0.99
R0039:Mcoln2	UTSW	3	146183561	missense	probably damaging	0.99
R0044:Mcoln2	UTSW	3	146183561	missense	probably damaging	0.99
R0044:Mcoln2	UTSW	3	146183561	missense	probably damaging	0.99
R0109:Mcoln2	UTSW	3	146175718	missense	probably damaging	1.00
R0458:Mcoln2	UTSW	3	146150013	unclassified	probably benign
R1335:Mcoln2	UTSW	3	146180174	missense	probably benign	0.00
R1440:Mcoln2	UTSW	3	146190382	nonsense	probably null
R1459:Mcoln2	UTSW	3	146192224	splice site	probably null
R1510:Mcoln2	UTSW	3	146176610	missense	probably benign	0.02
R1603:Mcoln2	UTSW	3	146180222	missense	probably damaging	1.00
R1652:Mcoln2	UTSW	3	146163635	missense	possibly damaging	0.48
R1718:Mcoln2	UTSW	3	146190474	splice site	probably benign
R1826:Mcoln2	UTSW	3	146175472	missense	possibly damaging	0.69
R4319:Mcoln2	UTSW	3	146150011	splice site	probably null
R4719:Mcoln2	UTSW	3	146175713	missense	probably benign	0.00
R4939:Mcoln2	UTSW	3	146192241	missense	probably benign	0.07
R5475:Mcoln2	UTSW	3	146183786	missense	probably damaging	1.00
R5718:Mcoln2	UTSW	3	146181826	missense	probably damaging	1.00
R5906:Mcoln2	UTSW	3	146183741	missense	probably damaging	1.00
R6911:Mcoln2	UTSW	3	146192256	missense	probably damaging	1.00
R6963:Mcoln2	UTSW	3	146172035	missense	probably damaging	1.00
R7142:Mcoln2	UTSW	3	146183569	critical splice donor site	probably null
R7613:Mcoln2	UTSW	3	146175544	splice site	probably null
R8076:Mcoln2	UTSW	3	146190414	missense	probably damaging	1.00
R8077:Mcoln2	UTSW	3	146190414	missense	probably damaging	1.00
R8271:Mcoln2	UTSW	3	146192424	missense	unknown
R9146:Mcoln2	UTSW	3	146163548	missense	probably benign	0.00
R9319:Mcoln2	UTSW	3	146169936	missense	probably damaging	1.00
Z1177:Mcoln2	UTSW	3	146175704	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGGATCTGCCAGCTCGGAATTG -3'
(R):5'- AGCGCACTCTTCCTGGAGAAGAAC -3'

Sequencing Primer
(F):5'- CCAGCTCGGAATTGTTTGC -3'
(R):5'- TTCCTGGAGAAGAACGTGAAGC -3'

Posted On

2014-03-14