Mutagenetix > Incidental Mutations

Incidental Mutation 'R1452:Emsy'

161075

Institutional Source

Beutler Lab

Gene Symbol

Emsy

Ensembl Gene

ENSMUSG00000035401

Gene Name

EMSY, BRCA2-interacting transcriptional repressor

Synonyms

2210018M11Rik

MMRRC Submission

039507-MU

Accession Numbers

Is this an essential gene?

Possibly non essential (E-score: 0.430) question?

Stock #

R1452 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

98587137-98656783 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 98600674 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Lysine at position 802 (T802K)

Ref Sequence

ENSEMBL: ENSMUSP00000145858 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000038359] [ENSMUST00000205276] [ENSMUST00000205886] [ENSMUST00000205911] [ENSMUST00000206619] [ENSMUST00000206626]

AlphaFold

Q8BMB0

Predicted Effect

probably damaging
Transcript: ENSMUST00000038359
AA Change: T802K

PolyPhen 2 Score 0.960 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000038216
Gene: ENSMUSG00000035401
AA Change: T802K

Domain	Start	End	E-Value	Type
ENT	16	88	2.44e-29	SMART
low complexity region	94	104	N/A	INTRINSIC
low complexity region	124	142	N/A	INTRINSIC
low complexity region	226	248	N/A	INTRINSIC
low complexity region	293	331	N/A	INTRINSIC
low complexity region	363	406	N/A	INTRINSIC
low complexity region	527	540	N/A	INTRINSIC
low complexity region	542	557	N/A	INTRINSIC
low complexity region	681	698	N/A	INTRINSIC
low complexity region	807	816	N/A	INTRINSIC
low complexity region	866	882	N/A	INTRINSIC
low complexity region	893	909	N/A	INTRINSIC
low complexity region	1197	1208	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000205276
AA Change: T802K

PolyPhen 2 Score 0.960 (Sensitivity: 0.78; Specificity: 0.95)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000205485

Predicted Effect

unknown
Transcript: ENSMUST00000205886
AA Change: T122K

Predicted Effect

probably benign
Transcript: ENSMUST00000205911

Predicted Effect

probably benign
Transcript: ENSMUST00000206619

Predicted Effect

probably benign
Transcript: ENSMUST00000206626

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000206813

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 98.9%
3x: 97.8%
10x: 94.8%
20x: 87.5%

Validation Efficiency

99% (70/71)

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310007B03Rik	T	C	1: 93,152,939	Y415C	probably damaging	Het
2810474O19Rik	A	T	6: 149,326,632	K392I	probably damaging	Het
A2m	A	G	6: 121,678,056	I1446M	probably benign	Het
Acaca	T	A	11: 84,295,059		probably benign	Het
Adgre4	A	T	17: 55,784,996	E85D	probably benign	Het
Akt3	A	T	1: 177,131,067	Y26N	possibly damaging	Het
Arl15	T	C	13: 113,967,783	V132A	probably benign	Het
Atp6v1h	A	G	1: 5,098,137		probably benign	Het
Atrip	T	A	9: 109,072,659	D110V	probably damaging	Het
Bahcc1	T	G	11: 120,282,239		probably benign	Het
Cd53	C	T	3: 106,768,959	G31S	probably damaging	Het
Cdk14	T	C	5: 4,888,927	S404G	possibly damaging	Het
Cers3	A	T	7: 66,783,404	K156N	probably damaging	Het
Colgalt2	C	A	1: 152,504,153	L448M	probably damaging	Het
Cox15	G	T	19: 43,746,905	T141K	probably damaging	Het
Csnk2a2	C	T	8: 95,457,375		probably benign	Het
Cyp2b10	A	T	7: 25,925,388		probably benign	Het
Cyp2c55	A	G	19: 39,011,090	Y80C	probably damaging	Het
Depdc1a	A	G	3: 159,526,691	Y693C	possibly damaging	Het
Des	T	C	1: 75,363,477	S343P	probably damaging	Het
Dync1i2	T	C	2: 71,249,863		probably benign	Het
Eif3m	T	A	2: 105,006,777	Q199L	probably damaging	Het
Endov	A	G	11: 119,491,825	T33A	probably damaging	Het
Epb41l5	G	A	1: 119,549,166	T728I	probably damaging	Het
Fbxo39	A	G	11: 72,318,402	I363V	probably benign	Het
Gm8674	C	T	13: 49,900,517		noncoding transcript	Het
Gm9733	G	T	3: 15,332,152	T24K	unknown	Het
Il6st	T	A	13: 112,481,464	N137K	possibly damaging	Het
Inf2	A	G	12: 112,601,344	N136S	probably damaging	Het
Iqub	A	T	6: 24,491,559	I376N	probably benign	Het
Kansl3	A	G	1: 36,354,793		probably benign	Het
Kbtbd2	A	T	6: 56,781,924	H71Q	probably damaging	Het
Lgals8	G	T	13: 12,453,327	Y140*	probably null	Het
Macf1	T	A	4: 123,493,998	I924L	probably benign	Het
Mcoln2	A	T	3: 146,181,814	T329S	possibly damaging	Het
Mex3d	A	T	10: 80,381,520	L621Q	probably damaging	Het
Mut	A	G	17: 40,937,468		probably benign	Het
Ncor1	T	C	11: 62,334,631	H1038R	probably damaging	Het
Neb	A	G	2: 52,271,297		probably null	Het
Ngrn	A	G	7: 80,264,772	T224A	probably benign	Het
Nin	G	A	12: 70,017,650	R2019*	probably null	Het
Nphp4	C	G	4: 152,547,018	Q792E	probably damaging	Het
Olfr1047	T	A	2: 86,228,455	N172I	probably damaging	Het
Olfr1166	C	T	2: 88,124,311	V225I	probably benign	Het
Olfr140	C	T	2: 90,051,671	V218I	possibly damaging	Het
Olfr373	C	T	8: 72,100,176	Q139*	probably null	Het
Olfr70	C	T	4: 43,696,823	V117M	probably benign	Het
Pde4dip	C	A	3: 97,724,102	V1164L	probably damaging	Het
Plppr1	A	G	4: 49,301,067		probably benign	Het
Pole2	G	A	12: 69,207,929	L381F	probably benign	Het
Ppp2r5e	A	G	12: 75,469,536		probably benign	Het
Prim2	T	A	1: 33,630,404	E163D	probably benign	Het
Prrc2b	A	T	2: 32,194,985	D296V	probably damaging	Het
Pter	A	G	2: 12,978,621		probably benign	Het
Robo2	C	A	16: 73,961,910	V662L	probably damaging	Het
Slco1b2	A	T	6: 141,672,200	I424F	probably benign	Het
Snx29	A	T	16: 11,631,471	H260L	probably damaging	Het
Stil	A	G	4: 115,039,195	N959S	probably benign	Het
Taar8c	A	T	10: 24,101,610	D101E	probably benign	Het
Tns2	C	T	15: 102,108,934	R281C	probably damaging	Het
Trpc6	G	A	9: 8,653,147	M573I	probably damaging	Het
Tsr1	A	T	11: 74,899,599	D171V	probably benign	Het
Ube4b	T	C	4: 149,371,169	T348A	probably damaging	Het
Vmn1r85	A	T	7: 13,084,881	I112N	probably damaging	Het
Vps36	A	G	8: 22,218,210		probably null	Het
Wdfy3	G	A	5: 101,937,738	A630V	possibly damaging	Het
Wdsub1	A	T	2: 59,876,800	D14E	probably null	Het
Ylpm1	T	C	12: 85,030,383	I1294T	possibly damaging	Het
Zdhhc17	A	G	10: 110,955,075	F378L	probably benign	Het

Other mutations in Emsy

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01314:Emsy	APN	7	98593455	missense	probably benign	0.09
IGL01357:Emsy	APN	7	98590870	nonsense	probably null
IGL01620:Emsy	APN	7	98626624	missense	probably damaging	1.00
IGL01750:Emsy	APN	7	98619301	missense	probably damaging	0.99
IGL02032:Emsy	APN	7	98590780	missense	possibly damaging	0.94
IGL02388:Emsy	APN	7	98641666	missense	probably damaging	0.99
IGL03089:Emsy	APN	7	98637266	nonsense	probably null
IGL03272:Emsy	APN	7	98593762	missense	probably damaging	0.98
IGL03347:Emsy	APN	7	98610685	missense	probably damaging	0.99
IGL03400:Emsy	APN	7	98602726	missense	possibly damaging	0.94
IGL02980:Emsy	UTSW	7	98619380	missense	probably damaging	0.97
R0576:Emsy	UTSW	7	98593776	missense	probably damaging	0.99
R1102:Emsy	UTSW	7	98602589	missense	probably damaging	0.97
R1323:Emsy	UTSW	7	98610657	splice site	probably benign
R1438:Emsy	UTSW	7	98621406	missense	possibly damaging	0.88
R1439:Emsy	UTSW	7	98600841	intron	probably benign
R1515:Emsy	UTSW	7	98590856	missense	probably damaging	1.00
R1535:Emsy	UTSW	7	98593737	missense	possibly damaging	0.94
R1791:Emsy	UTSW	7	98647880	missense	probably damaging	0.99
R1829:Emsy	UTSW	7	98602729	missense	possibly damaging	0.95
R1829:Emsy	UTSW	7	98602730	missense	possibly damaging	0.88
R1848:Emsy	UTSW	7	98600821	missense	probably damaging	0.99
R1861:Emsy	UTSW	7	98641615	missense	probably damaging	1.00
R1929:Emsy	UTSW	7	98626623	missense	probably damaging	0.99
R1957:Emsy	UTSW	7	98647820	missense	probably damaging	1.00
R2221:Emsy	UTSW	7	98590775	missense	possibly damaging	0.83
R2223:Emsy	UTSW	7	98590775	missense	possibly damaging	0.83
R2271:Emsy	UTSW	7	98626623	missense	probably damaging	0.99
R4078:Emsy	UTSW	7	98590725	missense	probably damaging	0.99
R4707:Emsy	UTSW	7	98597104	missense	possibly damaging	0.94
R4783:Emsy	UTSW	7	98646479	missense	possibly damaging	0.74
R5453:Emsy	UTSW	7	98600806	missense	probably damaging	0.97
R5518:Emsy	UTSW	7	98593611	missense	possibly damaging	0.86
R5828:Emsy	UTSW	7	98593492	missense	probably benign
R5945:Emsy	UTSW	7	98619383	missense	probably damaging	0.97
R6153:Emsy	UTSW	7	98610853	missense	probably damaging	1.00
R6824:Emsy	UTSW	7	98593407	missense	probably benign	0.27
R7068:Emsy	UTSW	7	98610761	missense	probably benign	0.17
R7381:Emsy	UTSW	7	98590803	missense	probably damaging	0.98
R7417:Emsy	UTSW	7	98615486	missense	probably damaging	1.00
R7488:Emsy	UTSW	7	98615555	missense	possibly damaging	0.94
R7499:Emsy	UTSW	7	98630331	missense	possibly damaging	0.59
R7646:Emsy	UTSW	7	98619353	missense	probably damaging	1.00
R7682:Emsy	UTSW	7	98590698	missense	probably damaging	0.99
R7716:Emsy	UTSW	7	98599766	missense	unknown
R7789:Emsy	UTSW	7	98621489	missense	probably damaging	1.00
R7794:Emsy	UTSW	7	98600724	missense	probably benign	0.30
R7832:Emsy	UTSW	7	98639853	missense	probably damaging	1.00
R7974:Emsy	UTSW	7	98630218	missense	possibly damaging	0.73
R7996:Emsy	UTSW	7	98593681	missense	probably benign	0.00
R8070:Emsy	UTSW	7	98626715	missense	possibly damaging	0.73
R8221:Emsy	UTSW	7	98647904	missense	probably damaging	1.00
R8472:Emsy	UTSW	7	98654830	start gained	probably benign
R8841:Emsy	UTSW	7	98615561	missense	possibly damaging	0.95
R8998:Emsy	UTSW	7	98619305	missense	possibly damaging	0.63
R9063:Emsy	UTSW	7	98646477	missense	probably damaging	0.96
R9259:Emsy	UTSW	7	98593550	missense	probably benign
R9366:Emsy	UTSW	7	98641653	missense	probably benign	0.23
X0067:Emsy	UTSW	7	98630240	missense	possibly damaging	0.65
Z1088:Emsy	UTSW	7	98600722	missense	probably damaging	0.96

Predicted Primers

PCR Primer
(F):5'- GGGTTATTCACATCACTACCCCTGAAC -3'
(R):5'- ACTAATGGTAGGACACCCCAGAGGTC -3'

Sequencing Primer
(F):5'- gagaaagagagaaagagagagagag -3'
(R):5'- GGTTCATTATTCCCATAGACAGC -3'

Posted On

2014-03-14