Mutagenetix > Incidental Mutations

Incidental Mutation 'R1454:Tdrd5'

162181

Institutional Source

Beutler Lab

Gene Symbol

Tdrd5

Ensembl Gene

ENSMUSG00000060985

Gene Name

tudor domain containing 5

Synonyms

MMRRC Submission

039509-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.201) question?

Stock #

R1454 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

156255296-156303664 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to C at 156259836 bp

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Glutamic Acid at position 839 (Q839E)

Ref Sequence

ENSEMBL: ENSMUSP00000137182 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000121146] [ENSMUST00000167528]

Predicted Effect

probably benign
Transcript: ENSMUST00000121146
AA Change: Q916E

PolyPhen 2 Score 0.415 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000137298
Gene: ENSMUSG00000060985
AA Change: Q916E

Domain	Start	End	E-Value	Type
Pfam:OST-HTH	6	76	3.7e-11	PFAM
Pfam:OST-HTH	126	194	1.5e-10	PFAM
Pfam:OST-HTH	290	361	7.4e-10	PFAM
TUDOR	532	590	3.25e-7	SMART
low complexity region	739	753	N/A	INTRINSIC
low complexity region	1001	1021	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000167528
AA Change: Q839E

PolyPhen 2 Score 0.415 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000137182
Gene: ENSMUSG00000060985
AA Change: Q839E

Domain	Start	End	E-Value	Type
Pfam:OST-HTH	6	75	1.4e-9	PFAM
Pfam:OST-HTH	213	284	6.4e-9	PFAM
TUDOR	455	513	3.25e-7	SMART
low complexity region	662	676	N/A	INTRINSIC
low complexity region	924	944	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000193755

Meta Mutation Damage Score

0.1218

Coding Region Coverage

1x: 98.9%
3x: 98.0%
10x: 95.2%
20x: 89.2%

Validation Efficiency

97% (58/60)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit male infertility associated with defective spermatid elongation, occasional arrested male meiosis, and apoptosis of male germ cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamts5	A	G	16: 85,869,993	V537A	possibly damaging	Het
Adcy10	A	T	1: 165,515,380	I272F	possibly damaging	Het
Adcy6	A	G	15: 98,604,728	S2P	probably damaging	Het
Agap1	A	G	1: 89,837,806		probably null	Het
Aldh3a2	A	G	11: 61,265,102	V116A	probably benign	Het
Ankdd1b	A	T	13: 96,433,405		probably null	Het
Antxrl	G	A	14: 34,060,949	V233I	probably damaging	Het
Atp8b5	A	G	4: 43,302,590	I38V	probably benign	Het
Atxn7l2	A	G	3: 108,208,432		probably benign	Het
Bfsp2	A	T	9: 103,480,225	M1K	probably null	Het
Camsap3	T	A	8: 3,603,968	I520N	possibly damaging	Het
Cenpc1	C	T	5: 86,013,510	V854I	possibly damaging	Het
Csnk2a1	T	C	2: 152,257,427	L88S	probably damaging	Het
Dcaf17	A	G	2: 71,073,173	N171D	probably damaging	Het
Dctn1	G	C	6: 83,197,508	A1077P	possibly damaging	Het
Dock1	T	C	7: 134,851,609		probably benign	Het
Egfr	A	T	11: 16,889,920	I645L	probably benign	Het
Gdpd1	T	G	11: 87,059,509	K79N	possibly damaging	Het
Ggt5	A	T	10: 75,609,908	L432F	probably benign	Het
Gm11060	A	G	2: 105,093,752	T22A	unknown	Het
Gpr132	G	A	12: 112,852,240	T322I	possibly damaging	Het
Grin1	G	A	2: 25,292,430	R940*	probably null	Het
Hip1	T	C	5: 135,438,632	T316A	probably benign	Het
Hnrnpm	A	G	17: 33,666,488		probably benign	Het
Hsd3b5	G	A	3: 98,619,530	T200I	probably benign	Het
Hspa9	A	T	18: 34,938,606	L647H	probably damaging	Het
Itgad	T	C	7: 128,192,137	I727T	probably benign	Het
Kcnma1	T	C	14: 23,463,200	D522G	probably damaging	Het
Lipf	C	T	19: 33,970,732		probably benign	Het
Ly6i	T	C	15: 74,983,055	D2G	possibly damaging	Het
Mast1	G	A	8: 84,920,635	P631L	probably damaging	Het
Mmp1b	G	C	9: 7,386,693	L144V	probably damaging	Het
Msh6	A	G	17: 87,984,758	S314G	probably benign	Het
Myo5c	G	A	9: 75,263,066	V493I	possibly damaging	Het
Nefm	A	G	14: 68,121,379	L402P	probably damaging	Het
Nrxn2	T	C	19: 6,481,446	F697S	probably damaging	Het
Olfr156	A	T	4: 43,820,639	C241S	probably damaging	Het
Pex13	A	G	11: 23,649,422	I363T	probably benign	Het
Plcb3	T	C	19: 6,955,046	R1082G	possibly damaging	Het
Psg28	A	T	7: 18,427,964	S205T	possibly damaging	Het
Pxt1	C	A	17: 28,934,782	V26L	possibly damaging	Het
Ripk2	G	A	4: 16,163,239	T53M	probably damaging	Het
Slc5a9	A	G	4: 111,883,964	V495A	probably benign	Het
Snrpa	T	C	7: 27,192,937	K66R	probably benign	Het
Srgap1	T	A	10: 121,896,738	E145V	probably damaging	Het
Suz12	A	G	11: 80,032,113	T694A	probably benign	Het
Tatdn2	T	A	6: 113,704,327	D440E	probably benign	Het
Tbc1d21	A	G	9: 58,362,813		probably null	Het
Tbc1d31	T	A	15: 57,951,638	Y570*	probably null	Het
Tbc1d32	A	T	10: 56,177,479		probably benign	Het
Tecpr2	A	G	12: 110,968,953	N1402S	probably benign	Het
Thbs1	A	G	2: 118,122,672	D921G	probably damaging	Het
Tll1	A	G	8: 64,038,490	V803A	probably benign	Het
Tns2	C	T	15: 102,108,934	R281C	probably damaging	Het
Trappc9	G	A	15: 73,025,967	R377W	probably damaging	Het
Trpm4	T	C	7: 45,317,056	E461G	probably damaging	Het
Zp3	T	A	5: 135,984,188	I152N	probably damaging	Het

Other mutations in Tdrd5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01651:Tdrd5	APN	1	156301827	missense	probably benign	0.32
IGL02441:Tdrd5	APN	1	156259943	splice site	probably benign
IGL02932:Tdrd5	APN	1	156270620	missense	possibly damaging	0.52
R0049:Tdrd5	UTSW	1	156301903	missense	probably damaging	1.00
R0416:Tdrd5	UTSW	1	156285481	missense	probably damaging	0.96
R0518:Tdrd5	UTSW	1	156262941	missense	probably damaging	0.99
R1439:Tdrd5	UTSW	1	156277487	missense	probably damaging	1.00
R1497:Tdrd5	UTSW	1	156255802	missense	probably benign	0.28
R1774:Tdrd5	UTSW	1	156277509	missense	probably damaging	1.00
R2101:Tdrd5	UTSW	1	156301639	missense	probably damaging	1.00
R2125:Tdrd5	UTSW	1	156276573	missense	probably damaging	0.99
R2126:Tdrd5	UTSW	1	156276573	missense	probably damaging	0.99
R2197:Tdrd5	UTSW	1	156259865	missense	probably benign	0.02
R3820:Tdrd5	UTSW	1	156285483	missense	probably benign	0.16
R3928:Tdrd5	UTSW	1	156300778	missense	probably benign	0.06
R4258:Tdrd5	UTSW	1	156259742	missense	probably benign	0.00
R4502:Tdrd5	UTSW	1	156300764	missense	probably benign	0.00
R4601:Tdrd5	UTSW	1	156284374	missense	probably benign	0.12
R4602:Tdrd5	UTSW	1	156284374	missense	probably benign	0.12
R4610:Tdrd5	UTSW	1	156284374	missense	probably benign	0.12
R4611:Tdrd5	UTSW	1	156284374	missense	probably benign	0.12
R4674:Tdrd5	UTSW	1	156277435	missense	probably damaging	1.00
R4722:Tdrd5	UTSW	1	156302375	missense	probably benign	0.31
R4778:Tdrd5	UTSW	1	156255587	missense	probably damaging	0.98
R5737:Tdrd5	UTSW	1	156300724	missense	probably benign	0.01
R5881:Tdrd5	UTSW	1	156294500	missense	probably damaging	0.98
R5900:Tdrd5	UTSW	1	156277435	nonsense	probably null
R6234:Tdrd5	UTSW	1	156293377	missense	possibly damaging	0.93
R6557:Tdrd5	UTSW	1	156300721	missense	probably benign	0.10
R7068:Tdrd5	UTSW	1	156284271	missense	probably damaging	1.00
R7184:Tdrd5	UTSW	1	156259935	missense	probably benign	0.30
R7199:Tdrd5	UTSW	1	156301723	missense	probably damaging	0.98
R7432:Tdrd5	UTSW	1	156302432	missense	probably damaging	1.00
R7469:Tdrd5	UTSW	1	156262905	missense	probably benign	0.00
R8030:Tdrd5	UTSW	1	156270595	nonsense	probably null
R8323:Tdrd5	UTSW	1	156267262	missense	possibly damaging	0.63
X0026:Tdrd5	UTSW	1	156285427	missense	probably benign	0.01
Z1176:Tdrd5	UTSW	1	156255699	missense	probably damaging	1.00
Z1177:Tdrd5	UTSW	1	156255629	missense	probably damaging	1.00
Z1177:Tdrd5	UTSW	1	156302586	missense	possibly damaging	0.95
Z1177:Tdrd5	UTSW	1	156302588	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CGATCTTGGAGAGAATGGCAGCAC -3'
(R):5'- AGGGTAGCCCTCAGTACCATACTTG -3'

Sequencing Primer
(F):5'- CCAGCCACCTTTCAAGGTATG -3'
(R):5'- GCCCTCAGTACCATACTTGTTCATAG -3'

Posted On

2014-03-14