Mutagenetix > Incidental Mutation

Incidental Mutation 'R1454:Tatdn2'

162198

Institutional Source

Beutler Lab

Gene Symbol

Tatdn2

Ensembl Gene

ENSMUSG00000056952

Gene Name

TatD DNase domain containing 2

Synonyms

mKIAA0218

MMRRC Submission

039509-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R1454 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

113674090-113688030 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 113681288 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glutamic Acid at position 440 (D440E)

Ref Sequence

ENSEMBL: ENSMUSP00000145308 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000089018] [ENSMUST00000113022] [ENSMUST00000153661] [ENSMUST00000204753]

AlphaFold

B7ZNL9

Predicted Effect

probably benign
Transcript: ENSMUST00000089018
AA Change: D379E

PolyPhen 2 Score 0.083 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000086412
Gene: ENSMUSG00000056952
AA Change: D379E

Domain	Start	End	E-Value	Type
low complexity region	63	95	N/A	INTRINSIC
low complexity region	237	255	N/A	INTRINSIC
low complexity region	382	392	N/A	INTRINSIC
Pfam:TatD_DNase	457	721	3.3e-59	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000113022
AA Change: D440E

PolyPhen 2 Score 0.262 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000108645
Gene: ENSMUSG00000056952
AA Change: D440E

Domain	Start	End	E-Value	Type
low complexity region	63	95	N/A	INTRINSIC
low complexity region	237	255	N/A	INTRINSIC
low complexity region	443	453	N/A	INTRINSIC
Pfam:TatD_DNase	518	782	3.7e-61	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000138420

SMART Domains

Protein: ENSMUSP00000116559
Gene: ENSMUSG00000056952

Domain	Start	End	E-Value	Type
Pfam:TatD_DNase	1	146	2.9e-38	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000153661

SMART Domains

Protein: ENSMUSP00000123557
Gene: ENSMUSG00000056952

Domain	Start	End	E-Value	Type
Pfam:TatD_DNase	1	122	1.3e-22	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000200187

Predicted Effect

probably benign
Transcript: ENSMUST00000204753
AA Change: D440E

PolyPhen 2 Score 0.262 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000145308
Gene: ENSMUSG00000056952
AA Change: D440E

Domain	Start	End	E-Value	Type
low complexity region	63	95	N/A	INTRINSIC
low complexity region	237	255	N/A	INTRINSIC
low complexity region	443	453	N/A	INTRINSIC
Pfam:TatD_DNase	518	782	3.7e-61	PFAM

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 98.9%
3x: 98.0%
10x: 95.2%
20x: 89.2%

Validation Efficiency

97% (58/60)

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamts5	A	G	16: 85,666,881 (GRCm39)	V537A	possibly damaging	Het
Adcy10	A	T	1: 165,342,949 (GRCm39)	I272F	possibly damaging	Het
Adcy6	A	G	15: 98,502,609 (GRCm39)	S2P	probably damaging	Het
Agap1	A	G	1: 89,765,528 (GRCm39)		probably null	Het
Aldh3a2	A	G	11: 61,155,928 (GRCm39)	V116A	probably benign	Het
Ankdd1b	A	T	13: 96,569,913 (GRCm39)		probably null	Het
Antxrl	G	A	14: 33,782,906 (GRCm39)	V233I	probably damaging	Het
Atp8b5	A	G	4: 43,302,590 (GRCm39)	I38V	probably benign	Het
Atxn7l2	A	G	3: 108,115,748 (GRCm39)		probably benign	Het
Bfsp2	A	T	9: 103,357,424 (GRCm39)	M1K	probably null	Het
Camsap3	T	A	8: 3,653,968 (GRCm39)	I520N	possibly damaging	Het
Cenpc1	C	T	5: 86,161,369 (GRCm39)	V854I	possibly damaging	Het
Csnk2a1	T	C	2: 152,099,347 (GRCm39)	L88S	probably damaging	Het
Dcaf17	A	G	2: 70,903,517 (GRCm39)	N171D	probably damaging	Het
Dctn1	G	C	6: 83,174,490 (GRCm39)	A1077P	possibly damaging	Het
Dock1	T	C	7: 134,453,338 (GRCm39)		probably benign	Het
Egfr	A	T	11: 16,839,920 (GRCm39)	I645L	probably benign	Het
Gdpd1	T	G	11: 86,950,335 (GRCm39)	K79N	possibly damaging	Het
Ggt5	A	T	10: 75,445,742 (GRCm39)	L432F	probably benign	Het
Gm11060	A	G	2: 104,924,097 (GRCm39)	T22A	unknown	Het
Gpr132	G	A	12: 112,815,860 (GRCm39)	T322I	possibly damaging	Het
Grin1	G	A	2: 25,182,442 (GRCm39)	R940*	probably null	Het
Hip1	T	C	5: 135,467,486 (GRCm39)	T316A	probably benign	Het
Hnrnpm	A	G	17: 33,885,462 (GRCm39)		probably benign	Het
Hsd3b5	G	A	3: 98,526,846 (GRCm39)	T200I	probably benign	Het
Hspa9	A	T	18: 35,071,659 (GRCm39)	L647H	probably damaging	Het
Itgad	T	C	7: 127,791,309 (GRCm39)	I727T	probably benign	Het
Kcnma1	T	C	14: 23,513,268 (GRCm39)	D522G	probably damaging	Het
Lipf	C	T	19: 33,948,132 (GRCm39)		probably benign	Het
Ly6i	T	C	15: 74,854,904 (GRCm39)	D2G	possibly damaging	Het
Mast1	G	A	8: 85,647,264 (GRCm39)	P631L	probably damaging	Het
Mmp1b	G	C	9: 7,386,693 (GRCm39)	L144V	probably damaging	Het
Msh6	A	G	17: 88,292,186 (GRCm39)	S314G	probably benign	Het
Myo5c	G	A	9: 75,170,348 (GRCm39)	V493I	possibly damaging	Het
Nefm	A	G	14: 68,358,828 (GRCm39)	L402P	probably damaging	Het
Nrxn2	T	C	19: 6,531,476 (GRCm39)	F697S	probably damaging	Het
Or13c7b	A	T	4: 43,820,639 (GRCm39)	C241S	probably damaging	Het
Pex13	A	G	11: 23,599,422 (GRCm39)	I363T	probably benign	Het
Plcb3	T	C	19: 6,932,414 (GRCm39)	R1082G	possibly damaging	Het
Psg28	A	T	7: 18,161,889 (GRCm39)	S205T	possibly damaging	Het
Pxt1	C	A	17: 29,153,756 (GRCm39)	V26L	possibly damaging	Het
Ripk2	G	A	4: 16,163,239 (GRCm39)	T53M	probably damaging	Het
Slc5a9	A	G	4: 111,741,161 (GRCm39)	V495A	probably benign	Het
Snrpa	T	C	7: 26,892,362 (GRCm39)	K66R	probably benign	Het
Srgap1	T	A	10: 121,732,643 (GRCm39)	E145V	probably damaging	Het
Suz12	A	G	11: 79,922,939 (GRCm39)	T694A	probably benign	Het
Tbc1d21	A	G	9: 58,270,096 (GRCm39)		probably null	Het
Tbc1d31	T	A	15: 57,815,034 (GRCm39)	Y570*	probably null	Het
Tbc1d32	A	T	10: 56,053,575 (GRCm39)		probably benign	Het
Tdrd5	G	C	1: 156,087,406 (GRCm39)	Q839E	probably benign	Het
Tecpr2	A	G	12: 110,935,387 (GRCm39)	N1402S	probably benign	Het
Thbs1	A	G	2: 117,953,153 (GRCm39)	D921G	probably damaging	Het
Tll1	A	G	8: 64,491,524 (GRCm39)	V803A	probably benign	Het
Tns2	C	T	15: 102,017,369 (GRCm39)	R281C	probably damaging	Het
Trappc9	G	A	15: 72,897,816 (GRCm39)	R377W	probably damaging	Het
Trpm4	T	C	7: 44,966,480 (GRCm39)	E461G	probably damaging	Het
Zp3	T	A	5: 136,013,042 (GRCm39)	I152N	probably damaging	Het

Other mutations in Tatdn2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01302:Tatdn2	APN	6	113,680,985 (GRCm39)	splice site	probably benign
IGL01335:Tatdn2	APN	6	113,681,017 (GRCm39)	missense	probably benign	0.29
IGL01459:Tatdn2	APN	6	113,686,992 (GRCm39)	splice site	probably null
IGL02406:Tatdn2	APN	6	113,681,174 (GRCm39)	missense	probably benign	0.41
IGL02728:Tatdn2	APN	6	113,681,676 (GRCm39)	missense	probably damaging	1.00
R0321:Tatdn2	UTSW	6	113,686,462 (GRCm39)	missense	probably damaging	1.00
R0506:Tatdn2	UTSW	6	113,679,550 (GRCm39)	missense	probably benign	0.13
R0583:Tatdn2	UTSW	6	113,679,486 (GRCm39)	missense	possibly damaging	0.80
R1022:Tatdn2	UTSW	6	113,686,506 (GRCm39)	missense	probably damaging	1.00
R1024:Tatdn2	UTSW	6	113,686,506 (GRCm39)	missense	probably damaging	1.00
R1301:Tatdn2	UTSW	6	113,681,076 (GRCm39)	missense	probably damaging	1.00
R1459:Tatdn2	UTSW	6	113,687,031 (GRCm39)	missense	probably damaging	1.00
R1710:Tatdn2	UTSW	6	113,674,888 (GRCm39)	missense	possibly damaging	0.90
R1771:Tatdn2	UTSW	6	113,679,060 (GRCm39)	critical splice acceptor site	probably null
R2064:Tatdn2	UTSW	6	113,681,103 (GRCm39)	missense	probably benign	0.41
R2065:Tatdn2	UTSW	6	113,681,103 (GRCm39)	missense	probably benign	0.41
R2067:Tatdn2	UTSW	6	113,681,103 (GRCm39)	missense	probably benign	0.41
R4446:Tatdn2	UTSW	6	113,679,501 (GRCm39)	critical splice donor site	probably null
R4654:Tatdn2	UTSW	6	113,684,326 (GRCm39)	missense	probably benign	0.09
R4888:Tatdn2	UTSW	6	113,681,566 (GRCm39)	missense	possibly damaging	0.66
R7378:Tatdn2	UTSW	6	113,681,662 (GRCm39)	missense	probably damaging	1.00
R7971:Tatdn2	UTSW	6	113,687,235 (GRCm39)	splice site	probably null
R8086:Tatdn2	UTSW	6	113,686,482 (GRCm39)	missense	probably damaging	1.00
R8833:Tatdn2	UTSW	6	113,684,348 (GRCm39)	missense	probably damaging	1.00
R8872:Tatdn2	UTSW	6	113,681,170 (GRCm39)	missense	probably damaging	1.00
R9186:Tatdn2	UTSW	6	113,687,125 (GRCm39)	missense	probably benign	0.13
R9234:Tatdn2	UTSW	6	113,679,683 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- TCCCCACTGACTGTGTAATGTACCC -3'
(R):5'- GTCAGAGATGCAGCCTTGAAACTCC -3'

Sequencing Primer
(F):5'- ATGTACCCTCCTCATTTGTATAGTAG -3'
(R):5'- GTCCCCTTGAAAGACAGCTTG -3'

Posted On

2014-03-14