Mutagenetix > Incidental Mutation

Incidental Mutation 'R1454:Lipf'

162237

Institutional Source

Beutler Lab

Gene Symbol

Lipf

Ensembl Gene

ENSMUSG00000024768

Gene Name

lipase, gastric

Synonyms

2310051B21Rik

MMRRC Submission

039509-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.238) question?

Stock #

R1454 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

33938648-33954213 bp(+) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

C to T at 33948132 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000025680 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000025680]

AlphaFold

Q9CPP7

Predicted Effect

probably benign
Transcript: ENSMUST00000025680

SMART Domains

Protein: ENSMUSP00000025680
Gene: ENSMUSG00000024768

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:Abhydro_lipase	34	96	2.9e-27	PFAM
Pfam:Abhydrolase_1	77	377	2.3e-26	PFAM
Pfam:Abhydrolase_5	78	372	1.5e-9	PFAM

Coding Region Coverage

1x: 98.9%
3x: 98.0%
10x: 95.2%
20x: 89.2%

Validation Efficiency

97% (58/60)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes gastric lipase, an enzyme involved in the digestion of dietary triglycerides in the gastrointestinal tract, and responsible for 30% of fat digestion processes occurring in human. It is secreted by gastric chief cells in the fundic mucosa of the stomach, and it hydrolyzes the ester bonds of triglycerides under acidic pH conditions. The gene is a member of a conserved gene family of lipases that play distinct roles in neutral lipid metabolism. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2010]

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamts5	A	G	16: 85,666,881 (GRCm39)	V537A	possibly damaging	Het
Adcy10	A	T	1: 165,342,949 (GRCm39)	I272F	possibly damaging	Het
Adcy6	A	G	15: 98,502,609 (GRCm39)	S2P	probably damaging	Het
Agap1	A	G	1: 89,765,528 (GRCm39)		probably null	Het
Aldh3a2	A	G	11: 61,155,928 (GRCm39)	V116A	probably benign	Het
Ankdd1b	A	T	13: 96,569,913 (GRCm39)		probably null	Het
Antxrl	G	A	14: 33,782,906 (GRCm39)	V233I	probably damaging	Het
Atp8b5	A	G	4: 43,302,590 (GRCm39)	I38V	probably benign	Het
Atxn7l2	A	G	3: 108,115,748 (GRCm39)		probably benign	Het
Bfsp2	A	T	9: 103,357,424 (GRCm39)	M1K	probably null	Het
Camsap3	T	A	8: 3,653,968 (GRCm39)	I520N	possibly damaging	Het
Cenpc1	C	T	5: 86,161,369 (GRCm39)	V854I	possibly damaging	Het
Csnk2a1	T	C	2: 152,099,347 (GRCm39)	L88S	probably damaging	Het
Dcaf17	A	G	2: 70,903,517 (GRCm39)	N171D	probably damaging	Het
Dctn1	G	C	6: 83,174,490 (GRCm39)	A1077P	possibly damaging	Het
Dock1	T	C	7: 134,453,338 (GRCm39)		probably benign	Het
Egfr	A	T	11: 16,839,920 (GRCm39)	I645L	probably benign	Het
Gdpd1	T	G	11: 86,950,335 (GRCm39)	K79N	possibly damaging	Het
Ggt5	A	T	10: 75,445,742 (GRCm39)	L432F	probably benign	Het
Gm11060	A	G	2: 104,924,097 (GRCm39)	T22A	unknown	Het
Gpr132	G	A	12: 112,815,860 (GRCm39)	T322I	possibly damaging	Het
Grin1	G	A	2: 25,182,442 (GRCm39)	R940*	probably null	Het
Hip1	T	C	5: 135,467,486 (GRCm39)	T316A	probably benign	Het
Hnrnpm	A	G	17: 33,885,462 (GRCm39)		probably benign	Het
Hsd3b5	G	A	3: 98,526,846 (GRCm39)	T200I	probably benign	Het
Hspa9	A	T	18: 35,071,659 (GRCm39)	L647H	probably damaging	Het
Itgad	T	C	7: 127,791,309 (GRCm39)	I727T	probably benign	Het
Kcnma1	T	C	14: 23,513,268 (GRCm39)	D522G	probably damaging	Het
Ly6i	T	C	15: 74,854,904 (GRCm39)	D2G	possibly damaging	Het
Mast1	G	A	8: 85,647,264 (GRCm39)	P631L	probably damaging	Het
Mmp1b	G	C	9: 7,386,693 (GRCm39)	L144V	probably damaging	Het
Msh6	A	G	17: 88,292,186 (GRCm39)	S314G	probably benign	Het
Myo5c	G	A	9: 75,170,348 (GRCm39)	V493I	possibly damaging	Het
Nefm	A	G	14: 68,358,828 (GRCm39)	L402P	probably damaging	Het
Nrxn2	T	C	19: 6,531,476 (GRCm39)	F697S	probably damaging	Het
Or13c7b	A	T	4: 43,820,639 (GRCm39)	C241S	probably damaging	Het
Pex13	A	G	11: 23,599,422 (GRCm39)	I363T	probably benign	Het
Plcb3	T	C	19: 6,932,414 (GRCm39)	R1082G	possibly damaging	Het
Psg28	A	T	7: 18,161,889 (GRCm39)	S205T	possibly damaging	Het
Pxt1	C	A	17: 29,153,756 (GRCm39)	V26L	possibly damaging	Het
Ripk2	G	A	4: 16,163,239 (GRCm39)	T53M	probably damaging	Het
Slc5a9	A	G	4: 111,741,161 (GRCm39)	V495A	probably benign	Het
Snrpa	T	C	7: 26,892,362 (GRCm39)	K66R	probably benign	Het
Srgap1	T	A	10: 121,732,643 (GRCm39)	E145V	probably damaging	Het
Suz12	A	G	11: 79,922,939 (GRCm39)	T694A	probably benign	Het
Tatdn2	T	A	6: 113,681,288 (GRCm39)	D440E	probably benign	Het
Tbc1d21	A	G	9: 58,270,096 (GRCm39)		probably null	Het
Tbc1d31	T	A	15: 57,815,034 (GRCm39)	Y570*	probably null	Het
Tbc1d32	A	T	10: 56,053,575 (GRCm39)		probably benign	Het
Tdrd5	G	C	1: 156,087,406 (GRCm39)	Q839E	probably benign	Het
Tecpr2	A	G	12: 110,935,387 (GRCm39)	N1402S	probably benign	Het
Thbs1	A	G	2: 117,953,153 (GRCm39)	D921G	probably damaging	Het
Tll1	A	G	8: 64,491,524 (GRCm39)	V803A	probably benign	Het
Tns2	C	T	15: 102,017,369 (GRCm39)	R281C	probably damaging	Het
Trappc9	G	A	15: 72,897,816 (GRCm39)	R377W	probably damaging	Het
Trpm4	T	C	7: 44,966,480 (GRCm39)	E461G	probably damaging	Het
Zp3	T	A	5: 136,013,042 (GRCm39)	I152N	probably damaging	Het

Other mutations in Lipf

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01902:Lipf	APN	19	33,948,179 (GRCm39)	missense	probably benign	0.33
IGL02024:Lipf	APN	19	33,953,995 (GRCm39)	missense	probably damaging	1.00
R1427:Lipf	UTSW	19	33,943,000 (GRCm39)	missense	probably damaging	1.00
R1484:Lipf	UTSW	19	33,942,180 (GRCm39)	missense	probably benign	0.00
R1636:Lipf	UTSW	19	33,953,935 (GRCm39)	missense	probably damaging	1.00
R1720:Lipf	UTSW	19	33,943,066 (GRCm39)	nonsense	probably null
R1916:Lipf	UTSW	19	33,943,075 (GRCm39)	missense	probably benign	0.07
R2010:Lipf	UTSW	19	33,950,946 (GRCm39)	missense	probably benign
R2519:Lipf	UTSW	19	33,942,925 (GRCm39)	missense	probably damaging	0.99
R2937:Lipf	UTSW	19	33,950,438 (GRCm39)	missense	probably damaging	1.00
R4063:Lipf	UTSW	19	33,942,965 (GRCm39)	missense	probably benign	0.43
R4640:Lipf	UTSW	19	33,946,197 (GRCm39)	missense	probably damaging	0.98
R4671:Lipf	UTSW	19	33,954,076 (GRCm39)	missense	possibly damaging	0.94
R4818:Lipf	UTSW	19	33,943,088 (GRCm39)	missense	probably benign	0.04
R5619:Lipf	UTSW	19	33,944,292 (GRCm39)	missense	possibly damaging	0.95
R6034:Lipf	UTSW	19	33,942,289 (GRCm39)	missense	probably benign
R6034:Lipf	UTSW	19	33,942,289 (GRCm39)	missense	probably benign
R6045:Lipf	UTSW	19	33,944,244 (GRCm39)	missense	probably damaging	1.00
R6464:Lipf	UTSW	19	33,950,944 (GRCm39)	missense	probably benign	0.00
R7502:Lipf	UTSW	19	33,954,006 (GRCm39)	missense	probably damaging	1.00
R7649:Lipf	UTSW	19	33,943,098 (GRCm39)	missense	possibly damaging	0.84
R7713:Lipf	UTSW	19	33,950,465 (GRCm39)	missense	probably damaging	1.00
R7714:Lipf	UTSW	19	33,943,048 (GRCm39)	missense	probably damaging	1.00
R8203:Lipf	UTSW	19	33,944,283 (GRCm39)	missense	probably benign	0.00
R8804:Lipf	UTSW	19	33,942,198 (GRCm39)	missense	probably damaging	1.00
R8971:Lipf	UTSW	19	33,942,273 (GRCm39)	missense	probably benign
Z1176:Lipf	UTSW	19	33,942,995 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCTCGTCTAAAGCCATAGACACTGG -3'
(R):5'- TGGGGAAGTCTCATGAATGGAGACC -3'

Sequencing Primer
(F):5'- GGAGGCATTTAGACATTGCATCAC -3'
(R):5'- TCTCATGAATGGAGACCACAATG -3'

Posted On

2014-03-14