Incidental Mutation 'R1396:Usp6nl'
ID 162624
Institutional Source Beutler Lab
Gene Symbol Usp6nl
Ensembl Gene ENSMUSG00000039046
Gene Name USP6 N-terminal like
Synonyms TRE2NL
MMRRC Submission 039458-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.087) question?
Stock # R1396 (G1)
Quality Score 185
Status Not validated
Chromosome 2
Chromosomal Location 6327478-6451201 bp(+) (GRCm39)
Type of Mutation splice site (9 bp from exon)
DNA Base Change (assembly) A to G at 6431809 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000110587 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000042503] [ENSMUST00000114937]
AlphaFold Q80XC3
Predicted Effect probably null
Transcript: ENSMUST00000042503
SMART Domains Protein: ENSMUSP00000043178
Gene: ENSMUSG00000039046

DomainStartEndE-ValueType
TBC 120 338 2.14e-78 SMART
low complexity region 486 499 N/A INTRINSIC
low complexity region 576 591 N/A INTRINSIC
low complexity region 594 614 N/A INTRINSIC
low complexity region 811 825 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000114937
SMART Domains Protein: ENSMUSP00000110587
Gene: ENSMUSG00000039046

DomainStartEndE-ValueType
TBC 97 315 2.14e-78 SMART
low complexity region 463 476 N/A INTRINSIC
low complexity region 553 568 N/A INTRINSIC
low complexity region 571 591 N/A INTRINSIC
low complexity region 788 802 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000126659
Predicted Effect noncoding transcript
Transcript: ENSMUST00000150515
Coding Region Coverage
  • 1x: 98.9%
  • 3x: 98.0%
  • 10x: 95.3%
  • 20x: 89.4%
Validation Efficiency
Allele List at MGI

All alleles(32) : Gene trapped(32)

Other mutations in this stock
Total: 57 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930486L24Rik G A 13: 61,001,057 (GRCm39) P160S probably benign Het
Adamts12 G T 15: 11,311,558 (GRCm39) D1272Y probably benign Het
Akr1c20 A T 13: 4,557,726 (GRCm39) V267D probably damaging Het
C1s1 A G 6: 124,508,010 (GRCm39) S660P probably damaging Het
Ccdc202 A G 14: 96,119,987 (GRCm39) N248S probably benign Het
Ccdc40 A G 11: 119,122,629 (GRCm39) T144A possibly damaging Het
Cdk20 T C 13: 64,585,217 (GRCm39) I167T probably damaging Het
Chd6 A G 2: 160,825,023 (GRCm39) L1212S probably damaging Het
Clock G C 5: 76,414,649 (GRCm39) D15E probably benign Het
Clstn2 A G 9: 97,343,446 (GRCm39) V667A probably benign Het
Cr2 A T 1: 194,851,561 (GRCm39) probably null Het
Cyp2e1 A G 7: 140,352,992 (GRCm39) D343G probably damaging Het
Dync1h1 G A 12: 110,602,943 (GRCm39) E2195K probably benign Het
Etf1 G A 18: 35,041,220 (GRCm39) T298I possibly damaging Het
Gm5431 T C 11: 48,786,261 (GRCm39) probably benign Het
Gss G A 2: 155,409,641 (GRCm39) T265I probably damaging Het
Heatr1 C T 13: 12,420,927 (GRCm39) S406L possibly damaging Het
Hgsnat C A 8: 26,447,363 (GRCm39) M310I possibly damaging Het
Inpp5b G A 4: 124,682,873 (GRCm39) R598H probably damaging Het
Ints2 G T 11: 86,140,074 (GRCm39) Q253K probably damaging Het
Kng1 A G 16: 22,897,730 (GRCm39) M377V probably benign Het
Krt72 C T 15: 101,694,440 (GRCm39) probably null Het
Lemd2 G C 17: 27,409,706 (GRCm39) R482G probably damaging Het
Lrpprc C T 17: 85,033,731 (GRCm39) D1049N possibly damaging Het
Lrrc49 A T 9: 60,587,810 (GRCm39) H117Q probably damaging Het
Mcm6 A T 1: 128,279,213 (GRCm39) F191Y probably damaging Het
Mecom T C 3: 30,033,949 (GRCm39) T252A possibly damaging Het
Mgat4e T C 1: 134,469,271 (GRCm39) T258A probably benign Het
Mpeg1 A G 19: 12,440,168 (GRCm39) N542S probably damaging Het
Nln C T 13: 104,198,261 (GRCm39) V184I probably benign Het
Nova1 A C 12: 46,863,676 (GRCm39) F91L unknown Het
Polk T C 13: 96,620,716 (GRCm39) I516V probably benign Het
Ppig C T 2: 69,579,362 (GRCm39) P357S unknown Het
Ptpro T A 6: 137,420,592 (GRCm39) V1007D probably damaging Het
Rasal2 A T 1: 156,992,236 (GRCm39) H552Q probably damaging Het
Rnf41 G A 10: 128,271,440 (GRCm39) E117K probably benign Het
Sbk3 A G 7: 4,970,452 (GRCm39) Y306H possibly damaging Het
Senp1 A G 15: 97,974,435 (GRCm39) S126P probably benign Het
Sfr1 A G 19: 47,722,129 (GRCm39) K182E probably benign Het
Slc25a4 C A 8: 46,662,325 (GRCm39) R111L probably damaging Het
Slc9c1 A T 16: 45,393,710 (GRCm39) Y551F probably benign Het
Stard4 A T 18: 33,339,263 (GRCm39) N80K probably damaging Het
Tbk1 G A 10: 121,407,821 (GRCm39) T104M probably damaging Het
Tedc2 C A 17: 24,435,292 (GRCm39) E366* probably null Het
Tedc2 T A 17: 24,435,291 (GRCm39) E366V probably damaging Het
Tmem102 A T 11: 69,695,196 (GRCm39) W259R probably damaging Het
Tnk1 A T 11: 69,743,962 (GRCm39) C466S probably benign Het
Tspoap1 A C 11: 87,656,946 (GRCm39) Q307P probably damaging Het
Ugt2b35 A G 5: 87,159,389 (GRCm39) N528D possibly damaging Het
Vmn1r203 C T 13: 22,708,678 (GRCm39) T153M probably benign Het
Vmn1r89 T A 7: 12,953,938 (GRCm39) S157T probably damaging Het
Vmn2r103 A T 17: 20,013,230 (GRCm39) Y117F probably benign Het
Vmn2r116 A C 17: 23,605,115 (GRCm39) M143L probably benign Het
Vmn2r62 A T 7: 42,414,261 (GRCm39) D727E probably damaging Het
Vps13c A G 9: 67,862,304 (GRCm39) I2974V probably benign Het
Wrn C T 8: 33,758,847 (GRCm39) G769D probably damaging Het
Zhx3 T A 2: 160,622,940 (GRCm39) H409L possibly damaging Het
Other mutations in Usp6nl
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01021:Usp6nl APN 2 6,429,198 (GRCm39) missense probably damaging 1.00
IGL01603:Usp6nl APN 2 6,428,246 (GRCm39) missense probably damaging 1.00
IGL01690:Usp6nl APN 2 6,445,879 (GRCm39) missense probably benign 0.01
IGL01778:Usp6nl APN 2 6,432,381 (GRCm39) missense possibly damaging 0.78
IGL02799:Usp6nl APN 2 6,432,360 (GRCm39) splice site probably benign
3-1:Usp6nl UTSW 2 6,413,828 (GRCm39) splice site probably benign
R0060:Usp6nl UTSW 2 6,445,701 (GRCm39) missense probably benign 0.17
R0544:Usp6nl UTSW 2 6,425,820 (GRCm39) missense probably damaging 0.98
R0550:Usp6nl UTSW 2 6,405,134 (GRCm39) splice site probably benign
R0701:Usp6nl UTSW 2 6,419,829 (GRCm39) missense possibly damaging 0.75
R1967:Usp6nl UTSW 2 6,446,330 (GRCm39) missense probably benign 0.01
R2120:Usp6nl UTSW 2 6,445,748 (GRCm39) missense probably damaging 1.00
R2215:Usp6nl UTSW 2 6,429,150 (GRCm39) missense probably damaging 1.00
R2366:Usp6nl UTSW 2 6,445,770 (GRCm39) missense probably benign 0.00
R3737:Usp6nl UTSW 2 6,445,728 (GRCm39) missense probably damaging 0.99
R4178:Usp6nl UTSW 2 6,445,787 (GRCm39) missense probably benign 0.11
R4656:Usp6nl UTSW 2 6,445,973 (GRCm39) missense probably damaging 1.00
R4970:Usp6nl UTSW 2 6,425,714 (GRCm39) missense probably benign 0.05
R5112:Usp6nl UTSW 2 6,425,714 (GRCm39) missense probably benign 0.05
R5621:Usp6nl UTSW 2 6,445,243 (GRCm39) missense probably benign 0.40
R5642:Usp6nl UTSW 2 6,435,275 (GRCm39) missense probably damaging 0.97
R5999:Usp6nl UTSW 2 6,446,150 (GRCm39) missense probably damaging 1.00
R6931:Usp6nl UTSW 2 6,435,269 (GRCm39) missense possibly damaging 0.55
R7188:Usp6nl UTSW 2 6,445,330 (GRCm39) missense probably benign 0.03
R7696:Usp6nl UTSW 2 6,429,134 (GRCm39) missense probably damaging 1.00
R7973:Usp6nl UTSW 2 6,413,762 (GRCm39) missense probably damaging 1.00
R8223:Usp6nl UTSW 2 6,435,327 (GRCm39) missense probably damaging 1.00
R8321:Usp6nl UTSW 2 6,395,900 (GRCm39) missense possibly damaging 0.92
R8384:Usp6nl UTSW 2 6,432,604 (GRCm39) missense possibly damaging 0.85
R8465:Usp6nl UTSW 2 6,399,352 (GRCm39) missense probably damaging 0.99
R9571:Usp6nl UTSW 2 6,445,960 (GRCm39) missense possibly damaging 0.88
Predicted Primers PCR Primer
(F):5'- TTCGAGGGACACCATTTCCATGATG -3'
(R):5'- GTCACAGAGCCTTTTCAAGGCAAAC -3'

Sequencing Primer
(F):5'- CTTGGGATGCTATTTTCATAGCTAC -3'
(R):5'- CATAGTGAACTGTCTGATTGCAC -3'
Posted On 2014-03-17