Mutagenetix > Incidental Mutation

Incidental Mutation 'R1490:E130308A19Rik'

163640

Institutional Source

Beutler Lab

Gene Symbol

E130308A19Rik

Ensembl Gene

ENSMUSG00000045071

Gene Name

RIKEN cDNA E130308A19 gene

Synonyms

MMRRC Submission

039542-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.221) question?

Stock #

R1490 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

59626116-59757649 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 59719746 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Cysteine at position 426 (Y426C)

Ref Sequence

ENSEMBL: ENSMUSP00000062493 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000052420] [ENSMUST00000070150]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000052420
AA Change: Y426C

PolyPhen 2 Score 0.987 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000062493
Gene: ENSMUSG00000045071
AA Change: Y426C

Domain	Start	End	E-Value	Type
low complexity region	130	141	N/A	INTRINSIC
low complexity region	364	387	N/A	INTRINSIC
Pfam:DUF3504	520	673	2.2e-22	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000070150

SMART Domains

Protein: ENSMUSP00000065702
Gene: ENSMUSG00000045071

Domain	Start	End	E-Value	Type
low complexity region	130	141	N/A	INTRINSIC
low complexity region	364	387	N/A	INTRINSIC
low complexity region	496	507	N/A	INTRINSIC
Pfam:DUF3504	532	687	4.5e-40	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000152797

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.6%
20x: 93.6%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aldh1l2	G	A	10: 83,356,234 (GRCm39)	T52I	probably damaging	Het
Arhgef28	G	A	13: 98,114,952 (GRCm39)	R633W	probably damaging	Het
Atg9a	T	C	1: 75,162,389 (GRCm39)	N507S	possibly damaging	Het
Bsn	A	G	9: 107,991,193 (GRCm39)	S1520P	probably benign	Het
Cacul1	G	T	19: 60,568,837 (GRCm39)	A107E	probably damaging	Het
Cd74	A	G	18: 60,944,438 (GRCm39)	D216G	probably damaging	Het
Cdh16	A	T	8: 105,348,702 (GRCm39)	W109R	probably damaging	Het
Cdip1	C	T	16: 4,586,775 (GRCm39)	V100I	probably damaging	Het
Ceacam3	A	G	7: 16,897,071 (GRCm39)	D679G	probably damaging	Het
Comp	A	G	8: 70,826,563 (GRCm39)	D46G	possibly damaging	Het
Dlx3	T	C	11: 95,011,430 (GRCm39)	Y95H	probably benign	Het
Dmrta2	T	C	4: 109,837,072 (GRCm39)	S5P	unknown	Het
Entpd3	A	G	9: 120,383,225 (GRCm39)	S87G	probably benign	Het
Eps8l1	A	G	7: 4,473,888 (GRCm39)	R232G	probably damaging	Het
Gart	A	T	16: 91,421,232 (GRCm39)	V812D	probably damaging	Het
Gm10153	C	T	7: 141,743,879 (GRCm39)	C83Y	unknown	Het
Gpd2	T	C	2: 57,245,487 (GRCm39)	V394A	probably damaging	Het
Hpcal1	A	T	12: 17,836,225 (GRCm39)	E18D	probably benign	Het
Mdga2	T	C	12: 66,844,530 (GRCm39)	D156G	probably benign	Het
Mks1	A	G	11: 87,753,595 (GRCm39)	K510E	probably benign	Het
Ms4a19	A	G	19: 11,118,902 (GRCm39)	I69T	probably benign	Het
Mtmr4	G	A	11: 87,503,051 (GRCm39)	R1035Q	probably damaging	Het
Myh6	T	A	14: 55,200,175 (GRCm39)	K235*	probably null	Het
Nedd1	A	G	10: 92,536,660 (GRCm39)	F214S	probably damaging	Het
Or1e32	A	G	11: 73,705,197 (GRCm39)	V237A	possibly damaging	Het
Or1o3	A	G	17: 37,573,733 (GRCm39)	M274T	probably benign	Het
Or2l13	T	C	16: 19,305,672 (GRCm39)	M28T	probably benign	Het
Or52e15	A	G	7: 104,645,700 (GRCm39)	I137T	possibly damaging	Het
Pfkfb2	A	C	1: 130,625,626 (GRCm39)		probably null	Het
Pfkfb4	T	C	9: 108,856,688 (GRCm39)	L398P	probably damaging	Het
Pfn3	T	G	13: 55,562,732 (GRCm39)	D83A	probably damaging	Het
Pi4ka	C	A	16: 17,204,132 (GRCm39)	W54L	probably damaging	Het
Ppp3r1	A	G	11: 17,148,275 (GRCm39)	D161G	probably benign	Het
Prrc2a	A	G	17: 35,372,230 (GRCm39)	S1757P	probably benign	Het
Samd7	A	G	3: 30,812,502 (GRCm39)	E314G	probably benign	Het
Slc17a4	A	G	13: 24,088,736 (GRCm39)	I217T	probably benign	Het
Slc22a1	A	T	17: 12,881,780 (GRCm39)		probably null	Het
Slc7a7	C	T	14: 54,646,103 (GRCm39)	R120H	probably damaging	Het
Sos1	A	T	17: 80,721,104 (GRCm39)	H905Q	probably benign	Het
Thada	G	A	17: 84,754,029 (GRCm39)	T314I	possibly damaging	Het
Tirap	ACTGCTGCTGCTGCTGCTG	ACTGCTGCTGCTGCTG	9: 35,100,362 (GRCm39)		probably benign	Het
Tlr11	A	C	14: 50,600,633 (GRCm39)	H873P	probably benign	Het
Tlr4	A	T	4: 66,757,611 (GRCm39)	T135S	possibly damaging	Het
Tmem116	T	C	5: 121,633,174 (GRCm39)	S183P	probably damaging	Het
Tubgcp3	A	T	8: 12,689,550 (GRCm39)	I572K	probably damaging	Het
Ugcg	C	T	4: 59,207,798 (GRCm39)	P46S	probably benign	Het
Ush2a	C	T	1: 188,092,038 (GRCm39)	T523I	probably benign	Het
Usp40	G	A	1: 87,916,687 (GRCm39)	Q364*	probably null	Het
Vmn1r61	T	C	7: 5,614,242 (GRCm39)	Q24R	probably benign	Het
Wdfy4	C	A	14: 32,874,495 (GRCm39)		probably null	Het
Zfp458	G	A	13: 67,405,573 (GRCm39)	P286S	probably damaging	Het
Zfp68	A	T	5: 138,605,091 (GRCm39)	C373S	probably benign	Het
Zfp768	T	A	7: 126,942,803 (GRCm39)	I442F	probably damaging	Het
Zfp990	A	G	4: 145,263,853 (GRCm39)	R284G	probably benign	Het

Other mutations in E130308A19Rik

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00660:E130308A19Rik	APN	4	59,737,743 (GRCm39)	splice site	probably benign
IGL00672:E130308A19Rik	APN	4	59,719,697 (GRCm39)	missense	probably benign	0.00
IGL00937:E130308A19Rik	APN	4	59,690,846 (GRCm39)	missense	probably benign	0.01
IGL01885:E130308A19Rik	APN	4	59,720,004 (GRCm39)	missense	probably benign	0.20
IGL02638:E130308A19Rik	APN	4	59,719,676 (GRCm39)	nonsense	probably null
H8562:E130308A19Rik	UTSW	4	59,691,033 (GRCm39)	missense	possibly damaging	0.70
R0044:E130308A19Rik	UTSW	4	59,690,290 (GRCm39)	missense	possibly damaging	0.86
R0523:E130308A19Rik	UTSW	4	59,719,716 (GRCm39)	missense	probably damaging	0.98
R0788:E130308A19Rik	UTSW	4	59,719,847 (GRCm39)	missense	possibly damaging	0.76
R1215:E130308A19Rik	UTSW	4	59,690,743 (GRCm39)	missense	probably benign	0.37
R2292:E130308A19Rik	UTSW	4	59,690,579 (GRCm39)	missense	probably damaging	0.99
R3907:E130308A19Rik	UTSW	4	59,752,393 (GRCm39)	missense	probably benign	0.14
R4288:E130308A19Rik	UTSW	4	59,690,308 (GRCm39)	missense	probably benign	0.33
R4780:E130308A19Rik	UTSW	4	59,691,057 (GRCm39)	missense	probably benign	0.01
R4781:E130308A19Rik	UTSW	4	59,691,057 (GRCm39)	missense	probably benign	0.01
R4834:E130308A19Rik	UTSW	4	59,690,317 (GRCm39)	nonsense	probably null
R4985:E130308A19Rik	UTSW	4	59,691,017 (GRCm39)	missense	probably benign	0.01
R6123:E130308A19Rik	UTSW	4	59,737,565 (GRCm39)	missense	probably damaging	1.00
R6290:E130308A19Rik	UTSW	4	59,691,332 (GRCm39)	missense	probably benign	0.25
R6315:E130308A19Rik	UTSW	4	59,691,132 (GRCm39)	missense	probably benign
R6643:E130308A19Rik	UTSW	4	59,720,561 (GRCm39)	missense	possibly damaging	0.90
R6763:E130308A19Rik	UTSW	4	59,752,288 (GRCm39)	missense	probably damaging	0.99
R6980:E130308A19Rik	UTSW	4	59,719,991 (GRCm39)	missense	probably damaging	0.97
R7036:E130308A19Rik	UTSW	4	59,719,991 (GRCm39)	missense	probably damaging	0.97
R7078:E130308A19Rik	UTSW	4	59,737,688 (GRCm39)	missense	probably damaging	1.00
R7098:E130308A19Rik	UTSW	4	59,753,004 (GRCm39)	missense	possibly damaging	0.88
R7171:E130308A19Rik	UTSW	4	59,690,333 (GRCm39)	missense	probably damaging	1.00
R7247:E130308A19Rik	UTSW	4	59,690,502 (GRCm39)	missense	probably damaging	1.00
R7366:E130308A19Rik	UTSW	4	59,752,770 (GRCm39)	missense	probably damaging	0.99
R7916:E130308A19Rik	UTSW	4	59,719,841 (GRCm39)	missense	probably damaging	1.00
R8050:E130308A19Rik	UTSW	4	59,719,767 (GRCm39)	missense	probably damaging	1.00
R8445:E130308A19Rik	UTSW	4	59,720,526 (GRCm39)	missense	probably damaging	0.99
R8795:E130308A19Rik	UTSW	4	59,737,676 (GRCm39)	missense	possibly damaging	0.93
R9088:E130308A19Rik	UTSW	4	59,737,594 (GRCm39)	missense	probably benign	0.16
R9663:E130308A19Rik	UTSW	4	59,719,764 (GRCm39)	missense	possibly damaging	0.87
Z1176:E130308A19Rik	UTSW	4	59,720,313 (GRCm39)	missense	probably damaging	1.00
Z1177:E130308A19Rik	UTSW	4	59,720,223 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- TCAGTAGTGCGATAACCACAGCCC -3'
(R):5'- GGAACGCTTGAACTCCTTATCCCTG -3'

Sequencing Primer
(F):5'- ACTTTATTTCAGAGTAGCAAGTGC -3'
(R):5'- GAACTCCTTATCCCTGGTGATG -3'

Posted On

2014-03-28