Mutagenetix > Incidental Mutation

Incidental Mutation 'R1480:Zranb1'

164300

Institutional Source

Beutler Lab

Gene Symbol

Zranb1

Ensembl Gene

ENSMUSG00000030967

Gene Name

zinc finger, RAN-binding domain containing 1

Synonyms

9330160G10Rik, D7Wsu87e

MMRRC Submission

039533-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.915) question?

Stock #

R1480 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

132532905-132588127 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 132551745 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Tyrosine at position 132 (F132Y)

Ref Sequence

ENSEMBL: ENSMUSP00000147317 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000033265] [ENSMUST00000106157] [ENSMUST00000124096] [ENSMUST00000210507] [ENSMUST00000215716]

AlphaFold

Q7M760

Predicted Effect

probably benign
Transcript: ENSMUST00000033265
AA Change: F132Y

PolyPhen 2 Score 0.029 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000033265
Gene: ENSMUSG00000030967
AA Change: F132Y

Domain	Start	End	E-Value	Type
ZnF_RBZ	6	30	9.14e-5	SMART
ZnF_RBZ	86	110	6.56e-6	SMART
ZnF_RBZ	151	175	1.69e-8	SMART
low complexity region	180	195	N/A	INTRINSIC
Pfam:OTU	438	586	9.8e-35	PFAM
low complexity region	698	708	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000106157
AA Change: F132Y

PolyPhen 2 Score 0.029 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000101763
Gene: ENSMUSG00000030967
AA Change: F132Y

Domain	Start	End	E-Value	Type
ZnF_RBZ	6	30	9.14e-5	SMART
ZnF_RBZ	86	110	6.56e-6	SMART
ZnF_RBZ	151	175	1.69e-8	SMART
low complexity region	180	195	N/A	INTRINSIC
Pfam:OTU	438	586	1.5e-40	PFAM
low complexity region	698	708	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000124096

SMART Domains

Protein: ENSMUSP00000130971
Gene: ENSMUSG00000030849

Domain	Start	End	E-Value	Type
Pfam:Pkinase	1	118	4.8e-19	PFAM
Pfam:Pkinase_Tyr	1	118	1.7e-50	PFAM
low complexity region	146	160	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000210507
AA Change: F132Y

PolyPhen 2 Score 0.392 (Sensitivity: 0.90; Specificity: 0.89)

Predicted Effect

probably benign
Transcript: ENSMUST00000215716
AA Change: F158Y

PolyPhen 2 Score 0.065 (Sensitivity: 0.94; Specificity: 0.84)

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.0%
20x: 94.6%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit decreased CD4+ T cells and decreased susceptibility to experimental autoimmune encephalomyelitis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca2	C	T	2: 25,323,409 (GRCm39)	R126C	possibly damaging	Het
Abcb9	C	A	5: 124,216,889 (GRCm39)	A443S	probably benign	Het
Adcy3	A	G	12: 4,262,171 (GRCm39)	M1074V	probably damaging	Het
Adnp	A	G	2: 168,025,454 (GRCm39)	Y614H	probably damaging	Het
Agbl4	G	A	4: 111,423,914 (GRCm39)	M313I	possibly damaging	Het
AI987944	T	C	7: 41,024,343 (GRCm39)	D212G	probably benign	Het
Anxa2	TCCC	TCC	9: 69,397,036 (GRCm39)		probably null	Het
Aplp1	A	G	7: 30,135,448 (GRCm39)	S537P	probably benign	Het
Arap2	T	A	5: 62,826,472 (GRCm39)	R1031*	probably null	Het
Arid1a	A	G	4: 133,407,700 (GRCm39)	M2269T	unknown	Het
Ash1l	C	A	3: 88,892,359 (GRCm39)	P1413T	probably damaging	Het
Auh	G	A	13: 52,989,532 (GRCm39)	P308L	probably benign	Het
B3gnt5	A	T	16: 19,588,617 (GRCm39)	I279L	probably damaging	Het
Camkk2	T	C	5: 122,872,341 (GRCm39)		probably null	Het
Ccdc158	T	C	5: 92,796,903 (GRCm39)	K478E	probably damaging	Het
Ces1f	T	C	8: 94,000,782 (GRCm39)	I121V	probably benign	Het
Chad	A	T	11: 94,455,963 (GRCm39)		probably benign	Het
Col6a1	T	C	10: 76,545,752 (GRCm39)	I907V	unknown	Het
Cpe	T	A	8: 65,047,969 (GRCm39)	T432S	probably benign	Het
Csmd3	T	C	15: 47,595,325 (GRCm39)	T1941A	possibly damaging	Het
Dennd3	G	A	15: 73,404,695 (GRCm39)	V257I	probably benign	Het
Dnajc21	T	C	15: 10,460,037 (GRCm39)		probably null	Het
Dqx1	A	G	6: 83,036,433 (GRCm39)	R146G	possibly damaging	Het
Etf1	T	C	18: 35,042,276 (GRCm39)	E261G	probably damaging	Het
Fermt2	C	T	14: 45,699,244 (GRCm39)	V617I	possibly damaging	Het
Gabarap	T	C	11: 69,882,551 (GRCm39)	Y5H	probably damaging	Het
Gdap1	A	G	1: 17,215,781 (GRCm39)	Y29C	probably damaging	Het
Gimap5	A	G	6: 48,729,964 (GRCm39)	E178G	probably damaging	Het
Gpatch1	C	T	7: 35,002,763 (GRCm39)	G249E	probably damaging	Het
Gse1	T	G	8: 121,299,133 (GRCm39)		probably benign	Het
Kifc3	T	C	8: 95,836,515 (GRCm39)	D82G	probably damaging	Het
Kit	G	A	5: 75,797,977 (GRCm39)	D422N	probably benign	Het
Klhl28	A	T	12: 65,003,995 (GRCm39)	F173I	probably damaging	Het
Klk1b22	A	G	7: 43,766,278 (GRCm39)	D253G	possibly damaging	Het
Lias	T	A	5: 65,549,634 (GRCm39)	H39Q	probably benign	Het
Lrp1b	T	A	2: 40,793,401 (GRCm39)	D2504V	probably damaging	Het
Mgat5	A	T	1: 127,387,716 (GRCm39)	R557S	probably damaging	Het
Mrpl54	T	C	10: 81,101,489 (GRCm39)	T91A	probably benign	Het
Myh3	T	A	11: 66,984,371 (GRCm39)	D1069E	possibly damaging	Het
Nek1	T	A	8: 61,577,360 (GRCm39)		probably null	Het
Nfyc	A	C	4: 120,625,921 (GRCm39)		probably null	Het
Nol7	A	T	13: 43,552,104 (GRCm39)	E75V	probably damaging	Het
Nomo1	T	A	7: 45,710,337 (GRCm39)	V606E	probably damaging	Het
Npat	TGGTAAAA	T	9: 53,474,366 (GRCm39)		probably null	Het
Nt5c1b	A	G	12: 10,424,886 (GRCm39)	E142G	probably damaging	Het
Ogdh	A	T	11: 6,297,827 (GRCm39)		probably null	Het
Or1o4	A	G	17: 37,590,636 (GRCm39)	V225A	probably benign	Het
Parg	A	T	14: 31,931,585 (GRCm39)	K402*	probably null	Het
Patj	G	A	4: 98,357,819 (GRCm39)	G695E	probably damaging	Het
Pde3a	G	A	6: 141,433,300 (GRCm39)	S777N	probably benign	Het
Phactr2	G	A	10: 13,129,536 (GRCm39)	P174L	possibly damaging	Het
Phtf1	C	T	3: 103,894,750 (GRCm39)	R113*	probably null	Het
Pik3r4	G	T	9: 105,564,443 (GRCm39)	V1346L	probably benign	Het
Prkcb	T	C	7: 122,193,865 (GRCm39)	W525R	probably damaging	Het
Prl8a1	C	T	13: 27,758,055 (GRCm39)	R218H	possibly damaging	Het
Pum3	T	C	19: 27,376,310 (GRCm39)	E536G	probably benign	Het
Rb1	T	C	14: 73,500,042 (GRCm39)	N535S	probably benign	Het
Rbm7	G	T	9: 48,401,016 (GRCm39)	D237E	probably benign	Het
Ripor1	T	C	8: 106,342,180 (GRCm39)	V122A	probably damaging	Het
Sdhc	C	T	1: 170,973,370 (GRCm39)	R11H	probably benign	Het
Sema3c	A	G	5: 17,887,029 (GRCm39)	N360S	possibly damaging	Het
Serpinb5	T	A	1: 106,809,437 (GRCm39)	M281K	probably benign	Het
Serpinc1	A	G	1: 160,822,889 (GRCm39)	E210G	probably benign	Het
Shoc2	T	C	19: 53,976,202 (GRCm39)	S31P	probably benign	Het
Sult2a3	T	A	7: 13,856,836 (GRCm39)	N28I	possibly damaging	Het
Svil	C	T	18: 5,057,345 (GRCm39)	P598S	probably damaging	Het
Tacc3	G	A	5: 33,821,941 (GRCm39)	V234I	probably benign	Het
Tacr1	A	T	6: 82,469,511 (GRCm39)	M132L	possibly damaging	Het
Tas2r104	C	A	6: 131,662,257 (GRCm39)	V151F	probably benign	Het
Tbc1d10b	C	T	7: 126,802,950 (GRCm39)	S326N	probably benign	Het
Trim12c	C	T	7: 103,997,451 (GRCm39)	C35Y	probably damaging	Het
Trrap	T	C	5: 144,755,123 (GRCm39)	I2067T	probably benign	Het
Upk1a	T	C	7: 30,306,311 (GRCm39)	I152V	probably benign	Het
Vmn2r39	T	G	7: 9,017,955 (GRCm39)	T794P	probably damaging	Het
Wnk2	G	A	13: 49,210,708 (GRCm39)	P1704S	probably damaging	Het
Zfp609	T	C	9: 65,610,593 (GRCm39)	E790G	possibly damaging	Het
Zmym1	G	T	4: 126,942,405 (GRCm39)	T563K	probably damaging	Het
Zranb3	C	T	1: 128,019,599 (GRCm39)	A48T	probably damaging	Het

Other mutations in Zranb1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00499:Zranb1	APN	7	132,584,233 (GRCm39)	splice site	probably benign
IGL00843:Zranb1	APN	7	132,551,622 (GRCm39)	missense	probably benign	0.26
IGL01727:Zranb1	APN	7	132,568,349 (GRCm39)	missense	probably damaging	1.00
IGL02087:Zranb1	APN	7	132,575,146 (GRCm39)	splice site	probably benign
IGL02676:Zranb1	APN	7	132,568,410 (GRCm39)	missense	probably benign	0.16
IGL03081:Zranb1	APN	7	132,552,126 (GRCm39)	missense	probably damaging	0.99
IGL03095:Zranb1	APN	7	132,551,635 (GRCm39)	nonsense	probably null
IGL03186:Zranb1	APN	7	132,551,932 (GRCm39)	missense	possibly damaging	0.68
PIT4151001:Zranb1	UTSW	7	132,551,723 (GRCm39)	missense	probably benign
R0207:Zranb1	UTSW	7	132,552,114 (GRCm39)	missense	probably damaging	1.00
R0470:Zranb1	UTSW	7	132,584,500 (GRCm39)	missense	probably damaging	1.00
R0854:Zranb1	UTSW	7	132,551,577 (GRCm39)	missense	possibly damaging	0.78
R1318:Zranb1	UTSW	7	132,568,281 (GRCm39)	nonsense	probably null
R1389:Zranb1	UTSW	7	132,573,062 (GRCm39)	missense	probably damaging	1.00
R1656:Zranb1	UTSW	7	132,551,496 (GRCm39)	missense	probably benign	0.31
R1956:Zranb1	UTSW	7	132,584,458 (GRCm39)	missense	probably damaging	1.00
R1958:Zranb1	UTSW	7	132,584,458 (GRCm39)	missense	probably damaging	1.00
R2010:Zranb1	UTSW	7	132,568,425 (GRCm39)	critical splice donor site	probably null
R2289:Zranb1	UTSW	7	132,551,768 (GRCm39)	missense	probably damaging	1.00
R3831:Zranb1	UTSW	7	132,584,505 (GRCm39)	missense	probably damaging	0.98
R4128:Zranb1	UTSW	7	132,568,281 (GRCm39)	nonsense	probably null
R4745:Zranb1	UTSW	7	132,574,443 (GRCm39)	missense	probably damaging	0.97
R5121:Zranb1	UTSW	7	132,551,916 (GRCm39)	missense	probably benign	0.06
R5262:Zranb1	UTSW	7	132,584,556 (GRCm39)	small insertion	probably benign
R5263:Zranb1	UTSW	7	132,584,556 (GRCm39)	small insertion	probably benign
R5264:Zranb1	UTSW	7	132,584,556 (GRCm39)	small insertion	probably benign
R5522:Zranb1	UTSW	7	132,585,678 (GRCm39)	makesense	probably null
R6252:Zranb1	UTSW	7	132,585,633 (GRCm39)	missense	probably benign	0.00
R6519:Zranb1	UTSW	7	132,551,857 (GRCm39)	nonsense	probably null
R6671:Zranb1	UTSW	7	132,573,042 (GRCm39)	missense	probably damaging	1.00
R6827:Zranb1	UTSW	7	132,551,474 (GRCm39)	missense	probably benign	0.17
R6928:Zranb1	UTSW	7	132,568,323 (GRCm39)	missense	possibly damaging	0.65
R7313:Zranb1	UTSW	7	132,584,481 (GRCm39)	missense	probably damaging	1.00
R7583:Zranb1	UTSW	7	132,585,625 (GRCm39)	missense	probably benign	0.00
R8181:Zranb1	UTSW	7	132,585,508 (GRCm39)	missense	probably damaging	1.00
R8236:Zranb1	UTSW	7	132,551,393 (GRCm39)	missense	probably damaging	0.99
R8463:Zranb1	UTSW	7	132,551,810 (GRCm39)	missense	possibly damaging	0.68
R9006:Zranb1	UTSW	7	132,572,909 (GRCm39)	splice site	probably benign
R9103:Zranb1	UTSW	7	132,584,167 (GRCm39)	missense	probably damaging	0.96
R9134:Zranb1	UTSW	7	132,551,886 (GRCm39)	missense	probably benign	0.00
R9229:Zranb1	UTSW	7	132,583,117 (GRCm39)	missense	probably damaging	0.98
R9244:Zranb1	UTSW	7	132,585,640 (GRCm39)	missense	probably damaging	1.00
R9417:Zranb1	UTSW	7	132,585,466 (GRCm39)	missense	probably damaging	1.00
R9596:Zranb1	UTSW	7	132,552,146 (GRCm39)	missense	probably benign	0.32
R9708:Zranb1	UTSW	7	132,584,600 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- TACTATGTGTCGTGCCCAGAGACC -3'
(R):5'- ACTTCCGAGTCCCGTTTTGTAGTTG -3'

Sequencing Primer
(F):5'- ATGTCCAGACTCTAGTGCAAG -3'
(R):5'- GAAGAAGCCTCTTCAGTCTCTG -3'

Posted On

2014-03-28