Mutagenetix > Incidental Mutation

Incidental Mutation 'R1468:Gpd2'

164643

Institutional Source

Beutler Lab

Gene Symbol

Gpd2

Ensembl Gene

ENSMUSG00000026827

Gene Name

glycerol phosphate dehydrogenase 2, mitochondrial

Synonyms

Gdm1

MMRRC Submission

039521-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.593) question?

Stock #

R1468 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

57127690-57260731 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 57245786 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Proline at position 439 (T439P)

Ref Sequence

ENSEMBL: ENSMUSP00000130992 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028167] [ENSMUST00000112618] [ENSMUST00000169687]

AlphaFold

Q64521

Predicted Effect

probably damaging
Transcript: ENSMUST00000028167
AA Change: T439P

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000028167
Gene: ENSMUSG00000026827
AA Change: T439P

Domain	Start	End	E-Value	Type
transmembrane domain	7	29	N/A	INTRINSIC
Pfam:FAD_binding_2	71	145	5.2e-7	PFAM
Pfam:FAD_oxidored	71	147	2.3e-9	PFAM
Pfam:DAO	71	441	8.9e-52	PFAM
EFh	627	655	1.38e1	SMART
EFh	663	691	1.27e-3	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000112618
AA Change: T439P

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000108237
Gene: ENSMUSG00000026827
AA Change: T439P

Domain	Start	End	E-Value	Type
transmembrane domain	7	29	N/A	INTRINSIC
Pfam:FAD_binding_2	71	143	4.6e-7	PFAM
Pfam:DAO	71	441	2.9e-50	PFAM
Pfam:DAO_C	462	588	2.1e-42	PFAM
EFh	645	673	1.38e1	SMART
EFh	681	709	1.27e-3	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000141536

Predicted Effect

probably damaging
Transcript: ENSMUST00000169687
AA Change: T439P

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000130992
Gene: ENSMUSG00000026827
AA Change: T439P

Domain	Start	End	E-Value	Type
transmembrane domain	7	29	N/A	INTRINSIC
Pfam:FAD_binding_2	71	145	5.2e-7	PFAM
Pfam:FAD_oxidored	71	147	2.3e-9	PFAM
Pfam:DAO	71	441	8.9e-52	PFAM
EFh	627	655	1.38e1	SMART
EFh	663	691	1.27e-3	SMART

Meta Mutation Damage Score

0.9626

Coding Region Coverage

1x: 99.7%
3x: 98.4%
10x: 90.8%
20x: 69.0%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene localizes to the inner mitochondrial membrane and catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate, using FAD as a cofactor. Along with GDP1, the encoded protein constitutes the glycerol phosphate shuttle, which reoxidizes NADH formed during glycolysis. Two transcript variants encoding the same protein have been found for this gene.[provided by RefSeq, Jan 2010]
PHENOTYPE: Homozygotes for targeted null mutations exhibit diminished hepatic ATP levels, decreased adiposity and fasting blood glucose, and, on an inbred background, reductions in preweaning viability and fertility. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 99 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2900092C05Rik	T	G	7: 12,246,507 (GRCm39)	M1R	probably null	Het
5031439G07Rik	G	T	15: 84,837,345 (GRCm39)	P280T	probably damaging	Het
Abca2	C	T	2: 25,331,308 (GRCm39)	S1267L	probably damaging	Het
Acsl3	A	T	1: 78,684,126 (GRCm39)	R719S	probably benign	Het
Adam1a	A	T	5: 121,657,839 (GRCm39)		probably null	Het
Aldh6a1	T	C	12: 84,488,544 (GRCm39)	E89G	possibly damaging	Het
Ankrd36	A	G	11: 5,525,752 (GRCm39)	Y238C	probably damaging	Het
Ankrd65	G	A	4: 155,877,362 (GRCm39)	R291Q	probably benign	Het
Ano2	C	T	6: 125,773,227 (GRCm39)	R287W	probably damaging	Het
Ap1ar	A	G	3: 127,606,215 (GRCm39)	I125T	probably benign	Het
Arid1b	A	G	17: 5,293,197 (GRCm39)	D705G	probably damaging	Het
Asb18	T	A	1: 89,924,005 (GRCm39)	N86I	probably damaging	Het
Bicral	A	T	17: 47,135,519 (GRCm39)	S564T	probably benign	Het
Bpifa6	A	G	2: 153,831,192 (GRCm39)	M253V	probably benign	Het
Braf	T	C	6: 39,642,017 (GRCm39)	D194G	probably damaging	Het
Brinp3	C	A	1: 146,777,700 (GRCm39)	P716T	probably benign	Het
C7	T	A	15: 5,041,631 (GRCm39)	Y425F	probably damaging	Het
Ccdc102a	T	C	8: 95,632,714 (GRCm39)	K421R	probably benign	Het
Cep89	G	A	7: 35,120,388 (GRCm39)		probably null	Het
Chgb	A	T	2: 132,634,720 (GRCm39)	M221L	probably benign	Het
Chst14	A	G	2: 118,758,145 (GRCm39)	Y313C	probably damaging	Het
Ciita	G	A	16: 10,331,152 (GRCm39)		probably null	Het
Clec12b	A	T	6: 129,357,603 (GRCm39)	I85N	probably damaging	Het
Clec2e	G	T	6: 129,070,459 (GRCm39)	Y187*	probably null	Het
Crbn	T	C	6: 106,767,804 (GRCm39)	K229E	probably benign	Het
Ctdspl2	A	T	2: 121,811,762 (GRCm39)	Q201L	probably benign	Het
Cyp2c55	T	A	19: 38,999,525 (GRCm39)	V77E	probably damaging	Het
Cyp2c69	A	C	19: 39,837,839 (GRCm39)	D414E	probably damaging	Het
Dlg1	A	G	16: 31,661,640 (GRCm39)		probably null	Het
Dnah5	C	A	15: 28,230,609 (GRCm39)	S169*	probably null	Het
Dock4	C	A	12: 40,805,809 (GRCm39)	T927K	probably benign	Het
Esrp2	T	G	8: 106,860,453 (GRCm39)	D259A	probably damaging	Het
Fam169a	A	G	13: 97,255,038 (GRCm39)	K418R	probably benign	Het
Fancm	A	T	12: 65,146,067 (GRCm39)	I597F	probably damaging	Het
Fat1	G	A	8: 45,463,582 (GRCm39)	V1375M	probably damaging	Het
Fbxw10	A	T	11: 62,753,464 (GRCm39)	D486V	probably damaging	Het
Fermt1	C	T	2: 132,766,942 (GRCm39)	E342K	probably benign	Het
Foxp1	T	A	6: 98,955,181 (GRCm39)	H195L	possibly damaging	Het
Gfra1	T	A	19: 58,440,407 (GRCm39)	I138L	probably benign	Het
Gm12185	T	C	11: 48,806,501 (GRCm39)	D230G	possibly damaging	Het
Gpm6a	A	T	8: 55,490,385 (GRCm39)	K20N	probably damaging	Het
Hc	A	T	2: 34,873,819 (GRCm39)	Y158*	probably null	Het
Hectd4	A	T	5: 121,487,235 (GRCm39)	D3410V	possibly damaging	Het
Il17b	G	A	18: 61,823,483 (GRCm39)		probably null	Het
Irx4	G	T	13: 73,413,695 (GRCm39)	R55L	possibly damaging	Het
Lama3	T	C	18: 12,574,164 (GRCm39)	V582A	probably benign	Het
Ldhd	G	T	8: 112,353,925 (GRCm39)	A425E	possibly damaging	Het
Lrp1b	C	T	2: 40,817,841 (GRCm39)		probably null	Het
Lrp5	T	C	19: 3,670,191 (GRCm39)	T638A	possibly damaging	Het
Lrrk1	A	C	7: 65,909,722 (GRCm39)	F1996C	probably damaging	Het
Ly6h	G	A	15: 75,437,986 (GRCm39)	S21L	probably benign	Het
Mctp1	T	C	13: 76,973,392 (GRCm39)	V431A	probably benign	Het
Metap2	C	T	10: 93,707,345 (GRCm39)		probably null	Het
Mfsd2b	T	A	12: 4,920,536 (GRCm39)	K94*	probably null	Het
Micall2	A	G	5: 139,705,097 (GRCm39)	L79P	probably damaging	Het
Mucl2	T	C	15: 103,927,673 (GRCm39)	T95A	possibly damaging	Het
Myo15a	A	T	11: 60,396,832 (GRCm39)	T2634S	probably damaging	Het
Myo5b	G	T	18: 74,873,574 (GRCm39)	V1467L	probably damaging	Het
Nfic	G	T	10: 81,256,414 (GRCm39)	D105E	probably damaging	Het
Nrdc	T	A	4: 108,873,865 (GRCm39)	F227Y	probably benign	Het
Nrp2	A	T	1: 62,777,458 (GRCm39)	I88F	probably damaging	Het
Nup160	A	T	2: 90,530,887 (GRCm39)	H515L	probably benign	Het
Nup205	G	A	6: 35,202,917 (GRCm39)		probably null	Het
Oas1g	G	A	5: 121,020,069 (GRCm39)	T179I	probably benign	Het
Ogfr	A	T	2: 180,236,543 (GRCm39)	E376V	probably damaging	Het
Or2l13	T	G	16: 19,306,378 (GRCm39)	S263R	probably benign	Het
Or4a69	A	T	2: 89,312,855 (GRCm39)	V208D	possibly damaging	Het
Or4c107	T	G	2: 88,789,387 (GRCm39)	Y192*	probably null	Het
Or52d1	G	T	7: 103,755,896 (GRCm39)	V137F	possibly damaging	Het
Or5p6	C	T	7: 107,631,595 (GRCm39)		probably null	Het
Pard3b	T	C	1: 62,384,188 (GRCm39)	V851A	probably benign	Het
Pcdhb16	A	T	18: 37,611,142 (GRCm39)	Y34F	probably damaging	Het
Pikfyve	T	C	1: 65,290,825 (GRCm39)	Y1215H	probably damaging	Het
Pkhd1	A	T	1: 20,593,565 (GRCm39)	V1516E	probably damaging	Het
Ptprg	A	T	14: 12,190,767 (GRCm38)	I818F	probably benign	Het
Ralgapb	A	G	2: 158,304,173 (GRCm39)	E644G	possibly damaging	Het
Rbm45	A	G	2: 76,202,459 (GRCm39)	I127M	probably damaging	Het
Rtp2	T	C	16: 23,746,220 (GRCm39)	Y157C	probably damaging	Het
Sf3b3	A	T	8: 111,564,006 (GRCm39)	Y329N	probably damaging	Het
Sfxn1	A	G	13: 54,239,646 (GRCm39)		probably null	Het
Shkbp1	A	T	7: 27,044,751 (GRCm39)	C447S	probably damaging	Het
Sipa1l3	A	G	7: 29,021,685 (GRCm39)	S689P	possibly damaging	Het
Slc7a8	A	G	14: 54,970,656 (GRCm39)	S332P	probably damaging	Het
Slit1	C	A	19: 41,596,823 (GRCm39)	C1092F	probably damaging	Het
Stard9	A	G	2: 120,533,678 (GRCm39)	I619V	possibly damaging	Het
Sycp3	T	C	10: 88,305,454 (GRCm39)	V185A	possibly damaging	Het
Taar9	A	T	10: 23,985,382 (GRCm39)	N17K	possibly damaging	Het
Tbkbp1	T	C	11: 97,039,814 (GRCm39)	E102G	probably damaging	Het
Tex44	A	G	1: 86,354,834 (GRCm39)	N248D	probably benign	Het
Tmem63b	C	G	17: 45,989,904 (GRCm39)	R88P	possibly damaging	Het
Tnpo1	C	T	13: 98,986,665 (GRCm39)	V781I	probably benign	Het
Tonsl	C	T	15: 76,520,761 (GRCm39)		probably null	Het
Ttc6	A	G	12: 57,721,463 (GRCm39)	K984R	possibly damaging	Het
Usp34	A	G	11: 23,391,171 (GRCm39)	E2263G	probably damaging	Het
Usp8	A	G	2: 126,596,847 (GRCm39)	K875E	probably damaging	Het
Vmn1r223	A	G	13: 23,434,038 (GRCm39)	I211V	possibly damaging	Het
Vmn2r81	G	A	10: 79,129,496 (GRCm39)	V796I	probably damaging	Het
Wdr90	A	T	17: 26,073,027 (GRCm39)	V856D	probably damaging	Het
Wnk2	T	A	13: 49,235,571 (GRCm39)	T615S	probably damaging	Het

Other mutations in Gpd2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00946:Gpd2	APN	2	57,158,096 (GRCm39)	critical splice donor site	probably null
IGL01012:Gpd2	APN	2	57,254,542 (GRCm39)	missense	probably benign	0.00
IGL01096:Gpd2	APN	2	57,228,879 (GRCm39)	missense	probably damaging	0.98
IGL01642:Gpd2	APN	2	57,158,083 (GRCm39)	nonsense	probably null
IGL01816:Gpd2	APN	2	57,254,078 (GRCm39)	nonsense	probably null
IGL02257:Gpd2	APN	2	57,254,536 (GRCm39)	missense	probably benign	0.01
IGL02824:Gpd2	APN	2	57,254,339 (GRCm39)	missense	probably null	0.89
IGL02832:Gpd2	APN	2	57,228,991 (GRCm39)	missense	probably damaging	1.00
IGL03040:Gpd2	APN	2	57,245,805 (GRCm39)	missense	probably benign	0.06
IGL03107:Gpd2	APN	2	57,245,581 (GRCm39)	missense	probably damaging	1.00
IGL03131:Gpd2	APN	2	57,228,855 (GRCm39)	splice site	probably benign
IGL03218:Gpd2	APN	2	57,197,066 (GRCm39)	missense	probably damaging	1.00
IGL03226:Gpd2	APN	2	57,194,498 (GRCm39)	critical splice donor site	probably null
IGL03372:Gpd2	APN	2	57,245,519 (GRCm39)	missense	probably damaging	1.00
R0012:Gpd2	UTSW	2	57,228,880 (GRCm39)	missense	probably damaging	1.00
R0285:Gpd2	UTSW	2	57,228,967 (GRCm39)	missense	probably benign	0.16
R0379:Gpd2	UTSW	2	57,235,275 (GRCm39)	missense	probably damaging	1.00
R0401:Gpd2	UTSW	2	57,230,105 (GRCm39)	missense	possibly damaging	0.94
R1347:Gpd2	UTSW	2	57,247,683 (GRCm39)	missense	probably damaging	0.99
R1347:Gpd2	UTSW	2	57,247,683 (GRCm39)	missense	probably damaging	0.99
R1468:Gpd2	UTSW	2	57,245,786 (GRCm39)	missense	probably damaging	1.00
R1490:Gpd2	UTSW	2	57,245,487 (GRCm39)	missense	probably damaging	1.00
R1672:Gpd2	UTSW	2	57,247,712 (GRCm39)	missense	probably damaging	0.97
R1709:Gpd2	UTSW	2	57,247,667 (GRCm39)	missense	probably damaging	1.00
R1735:Gpd2	UTSW	2	57,245,563 (GRCm39)	missense	probably damaging	1.00
R2056:Gpd2	UTSW	2	57,229,025 (GRCm39)	critical splice donor site	probably null
R2959:Gpd2	UTSW	2	57,228,987 (GRCm39)	nonsense	probably null
R2960:Gpd2	UTSW	2	57,228,987 (GRCm39)	nonsense	probably null
R2961:Gpd2	UTSW	2	57,228,987 (GRCm39)	nonsense	probably null
R2962:Gpd2	UTSW	2	57,228,987 (GRCm39)	nonsense	probably null
R3008:Gpd2	UTSW	2	57,228,987 (GRCm39)	nonsense	probably null
R3009:Gpd2	UTSW	2	57,228,987 (GRCm39)	nonsense	probably null
R3881:Gpd2	UTSW	2	57,228,987 (GRCm39)	nonsense	probably null
R4073:Gpd2	UTSW	2	57,180,025 (GRCm39)	missense	probably damaging	1.00
R4153:Gpd2	UTSW	2	57,245,783 (GRCm39)	missense	probably damaging	1.00
R4564:Gpd2	UTSW	2	57,197,095 (GRCm39)	missense	possibly damaging	0.77
R4952:Gpd2	UTSW	2	57,197,025 (GRCm39)	nonsense	probably null
R5030:Gpd2	UTSW	2	57,194,417 (GRCm39)	missense	probably damaging	0.98
R5101:Gpd2	UTSW	2	57,245,913 (GRCm39)	missense	probably damaging	1.00
R5185:Gpd2	UTSW	2	57,230,216 (GRCm39)	missense	probably damaging	1.00
R6020:Gpd2	UTSW	2	57,254,525 (GRCm39)	missense	probably benign	0.18
R6325:Gpd2	UTSW	2	57,194,408 (GRCm39)	missense	probably damaging	0.96
R6536:Gpd2	UTSW	2	57,235,367 (GRCm39)	missense	probably benign	0.40
R6923:Gpd2	UTSW	2	57,245,800 (GRCm39)	missense	probably damaging	0.98
R7058:Gpd2	UTSW	2	57,197,112 (GRCm39)	splice site	probably null
R7380:Gpd2	UTSW	2	57,230,171 (GRCm39)	missense	probably damaging	1.00
R8052:Gpd2	UTSW	2	57,196,962 (GRCm39)	nonsense	probably null
R8098:Gpd2	UTSW	2	57,180,020 (GRCm39)	missense	possibly damaging	0.94
R8467:Gpd2	UTSW	2	57,254,596 (GRCm39)	missense	possibly damaging	0.95
R8851:Gpd2	UTSW	2	57,197,062 (GRCm39)	missense	possibly damaging	0.62
R9515:Gpd2	UTSW	2	57,195,866 (GRCm39)	missense	possibly damaging	0.78

Predicted Primers

PCR Primer
(F):5'- CAGCGGACTCATCACAATAGCAGG -3'
(R):5'- TCTCAACAACAGCAAGGCAAGGTAG -3'

Sequencing Primer
(F):5'- TCATCACAATAGCAGGTATGTGGG -3'
(R):5'- GTGTGGCAATGTCCACGAAC -3'

Posted On

2014-03-28