Mutagenetix > Incidental Mutation

Incidental Mutation 'R1465:Kcnq5'

165381

Institutional Source

Beutler Lab

Gene Symbol

Kcnq5

Ensembl Gene

ENSMUSG00000028033

Gene Name

potassium voltage-gated channel, subfamily Q, member 5

Synonyms

9230107O05Rik, D1Mgi1

MMRRC Submission

039519-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.382) question?

Stock #

R1465 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

21468627-22032166 bp(-) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

A to G at 21539692 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000134076 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029667] [ENSMUST00000115300] [ENSMUST00000173058] [ENSMUST00000173404] [ENSMUST00000174183]

AlphaFold

Q9JK45

Predicted Effect

probably null
Transcript: ENSMUST00000029667

SMART Domains

Protein: ENSMUSP00000029667
Gene: ENSMUSG00000028033

Domain	Start	End	E-Value	Type
low complexity region	6	36	N/A	INTRINSIC
low complexity region	52	82	N/A	INTRINSIC
transmembrane domain	128	150	N/A	INTRINSIC
Pfam:Ion_trans	163	347	1.7e-26	PFAM
Pfam:Ion_trans_2	272	352	5.3e-15	PFAM
Pfam:KCNQ_channel	446	648	3.6e-95	PFAM
low complexity region	848	858	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000115299

Predicted Effect

probably null
Transcript: ENSMUST00000115300

SMART Domains

Protein: ENSMUSP00000110955
Gene: ENSMUSG00000028033

Domain	Start	End	E-Value	Type
low complexity region	6	36	N/A	INTRINSIC
low complexity region	52	82	N/A	INTRINSIC
Pfam:Ion_trans	126	359	4.1e-28	PFAM
Pfam:Ion_trans_2	272	352	3.3e-16	PFAM
Pfam:KCNQ_channel	467	661	1.8e-98	PFAM
low complexity region	867	877	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000173058

SMART Domains

Protein: ENSMUSP00000134166
Gene: ENSMUSG00000028033

Domain	Start	End	E-Value	Type
low complexity region	6	36	N/A	INTRINSIC
low complexity region	52	82	N/A	INTRINSIC
transmembrane domain	128	150	N/A	INTRINSIC
Pfam:Ion_trans	163	347	2e-26	PFAM
Pfam:Ion_trans_2	272	352	3.1e-15	PFAM
Pfam:KCNQ_channel	405	538	8e-64	PFAM
low complexity region	738	748	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000173404

SMART Domains

Protein: ENSMUSP00000134076
Gene: ENSMUSG00000028033

Domain	Start	End	E-Value	Type
low complexity region	6	36	N/A	INTRINSIC
low complexity region	52	82	N/A	INTRINSIC
transmembrane domain	128	150	N/A	INTRINSIC
Pfam:Ion_trans	163	347	2.4e-26	PFAM
Pfam:Ion_trans_2	272	352	3.6e-15	PFAM
Pfam:KCNQ_channel	437	639	2e-95	PFAM
low complexity region	839	849	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000174183

SMART Domains

Protein: ENSMUSP00000134389
Gene: ENSMUSG00000028033

Domain	Start	End	E-Value	Type
low complexity region	6	36	N/A	INTRINSIC
low complexity region	52	82	N/A	INTRINSIC
transmembrane domain	126	148	N/A	INTRINSIC

Coding Region Coverage

1x: 99.2%
3x: 97.3%
10x: 87.6%
20x: 63.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the KCNQ potassium channel gene family that is differentially expressed in subregions of the brain and in skeletal muscle. The protein encoded by this gene yields currents that activate slowly with depolarization and can form heteromeric channels with the protein encoded by the KCNQ3 gene. Currents expressed from this protein have voltage dependences and inhibitor sensitivities in common with M-currents. They are also inhibited by M1 muscarinic receptor activation. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2009]
PHENOTYPE: Mice homozygous for a dominant negative knock-in mutation in this gene exhibit partial prenatal lethality and abnormal afterhyperpolarization in the in the CA3 area of hippocampus. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 96 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310030G06Rik	A	G	9: 50,651,866 (GRCm39)	Y121H	probably damaging	Het
Abca13	G	T	11: 9,349,303 (GRCm39)	G3626W	probably damaging	Het
Acvr1c	A	G	2: 58,174,973 (GRCm39)	Y192H	probably damaging	Het
Afm	A	T	5: 90,698,200 (GRCm39)	D534V	probably damaging	Het
Agl	T	C	3: 116,565,021 (GRCm39)	E1076G	probably benign	Het
Ahcyl	T	C	16: 45,974,211 (GRCm39)	K389E	probably benign	Het
Angptl3	A	T	4: 98,925,757 (GRCm39)	H361L	probably benign	Het
Apob	T	C	12: 8,061,421 (GRCm39)	F3301S	possibly damaging	Het
Arhgef33	T	A	17: 80,674,730 (GRCm39)	C376S	possibly damaging	Het
Ass1	A	G	2: 31,410,428 (GRCm39)	*413W	probably null	Het
Atp6v1h	T	A	1: 5,165,911 (GRCm39)	L127Q	probably damaging	Het
Bcl2l1	G	A	2: 152,671,870 (GRCm39)	S14F	probably damaging	Het
Bhmt1b	T	G	18: 87,775,382 (GRCm39)	F302V	probably damaging	Het
Birc6	G	A	17: 74,930,853 (GRCm39)	A2477T	probably benign	Het
Bpifb9a	G	A	2: 154,112,941 (GRCm39)	A589T	possibly damaging	Het
Casp9	C	A	4: 141,533,151 (GRCm39)	T252K	probably benign	Het
Cct4	G	A	11: 22,952,922 (GRCm39)	D533N	probably damaging	Het
Clcn6	A	C	4: 148,098,358 (GRCm39)	I555S	probably damaging	Het
Col4a4	A	T	1: 82,475,543 (GRCm39)		probably null	Het
Cyp2d10	A	T	15: 82,288,129 (GRCm39)		probably null	Het
D930048N14Rik	A	G	11: 51,545,740 (GRCm39)		probably benign	Het
Dlg5	T	C	14: 24,204,764 (GRCm39)		probably null	Het
Dnah11	T	C	12: 118,002,430 (GRCm39)	E2240G	probably damaging	Het
Dnmt3a	A	G	12: 3,916,088 (GRCm39)	E17G	probably damaging	Het
Dock1	A	G	7: 134,384,138 (GRCm39)	T670A	probably benign	Het
Dpy19l2	A	G	9: 24,580,618 (GRCm39)	M241T	probably benign	Het
Dpy19l4	A	G	4: 11,296,034 (GRCm39)	S212P	probably damaging	Het
Ephb6	T	C	6: 41,593,040 (GRCm39)	F426S	probably damaging	Het
F5	A	T	1: 164,026,402 (GRCm39)	D1658V	probably benign	Het
Faah	A	T	4: 115,856,755 (GRCm39)	V469E	probably damaging	Het
Fas	T	C	19: 34,294,013 (GRCm39)	C123R	probably damaging	Het
Fhod1	T	C	8: 106,065,546 (GRCm39)		probably benign	Het
Filip1	A	G	9: 79,805,589 (GRCm39)	V55A	probably benign	Het
Frmpd1	G	A	4: 45,273,197 (GRCm39)	R372Q	probably damaging	Het
Glyctk	C	T	9: 106,034,806 (GRCm39)	G87S	probably damaging	Het
Golga3	T	C	5: 110,357,744 (GRCm39)	L1080P	probably damaging	Het
Gpr137	T	C	19: 6,915,812 (GRCm39)	T281A	probably benign	Het
Grap2	T	A	15: 80,532,612 (GRCm39)		probably null	Het
Hlcs	T	C	16: 94,069,151 (GRCm39)	D170G	probably damaging	Het
Hook1	A	G	4: 95,901,493 (GRCm39)	T484A	probably benign	Het
Hoxa5	T	A	6: 52,180,771 (GRCm39)	H187L	probably benign	Het
Inpp1	G	T	1: 52,829,253 (GRCm39)	S255R	probably benign	Het
Inpp4b	T	A	8: 82,494,786 (GRCm39)	V67E	probably damaging	Het
Iqgap3	A	G	3: 87,994,616 (GRCm39)	N105S	probably damaging	Het
Klhl1	T	C	14: 96,477,649 (GRCm39)	N473S	probably benign	Het
Klk1b24	C	A	7: 43,840,785 (GRCm39)	T71N	probably benign	Het
Loxhd1	A	G	18: 77,468,269 (GRCm39)		probably null	Het
Lrp1b	C	T	2: 41,001,071 (GRCm39)	R2165Q	probably benign	Het
Lrp2bp	A	T	8: 46,478,272 (GRCm39)	Q328L	possibly damaging	Het
Lrrc63	T	A	14: 75,344,829 (GRCm39)	K419N	possibly damaging	Het
Lrrc9	A	G	12: 72,547,533 (GRCm39)	N150S	probably benign	Het
Lrrn4	C	A	2: 132,713,995 (GRCm39)	C317F	probably damaging	Het
Ltbp2	T	C	12: 84,860,074 (GRCm39)	S627G	probably damaging	Het
Macf1	A	T	4: 123,386,947 (GRCm39)	S1224T	probably damaging	Het
Meis2	A	C	2: 115,889,151 (GRCm39)	H200Q	probably benign	Het
Mesd	C	A	7: 83,544,790 (GRCm39)	A80E	probably benign	Het
Mroh2a	G	C	1: 88,185,524 (GRCm39)	E1510D	probably damaging	Het
Myo3a	T	C	2: 22,467,939 (GRCm39)	F398L	probably benign	Het
Nanp	A	G	2: 150,872,749 (GRCm39)	C60R	probably benign	Het
Nectin2	T	G	7: 19,464,041 (GRCm39)	M313L	probably benign	Het
Nek4	C	T	14: 30,678,844 (GRCm39)	H123Y	probably damaging	Het
Nploc4	A	G	11: 120,299,607 (GRCm39)	V371A	probably damaging	Het
Or11g7	A	G	14: 50,690,634 (GRCm39)	T42A	possibly damaging	Het
Or13c7b	A	G	4: 43,820,723 (GRCm39)	F213L	probably benign	Het
Or52n4	T	C	7: 104,294,153 (GRCm39)	N140S	probably benign	Het
Or5b109	T	A	19: 13,212,265 (GRCm39)	V217E	possibly damaging	Het
Pcdh20	T	A	14: 88,706,673 (GRCm39)	Q209L	probably benign	Het
Pcdhb20	G	A	18: 37,637,750 (GRCm39)	R92H	probably damaging	Het
Pgap1	T	C	1: 54,567,714 (GRCm39)	H377R	probably benign	Het
Phyhipl	G	T	10: 70,406,798 (GRCm39)	P52Q	probably damaging	Het
Pwwp2a	T	A	11: 43,596,383 (GRCm39)	V516E	possibly damaging	Het
Rack1	T	C	11: 48,692,586 (GRCm39)	V69A	probably damaging	Het
Rexo5	T	A	7: 119,400,581 (GRCm39)		probably null	Het
Rock1	G	T	18: 10,072,863 (GRCm39)	Q1161K	possibly damaging	Het
Rps6ka2	T	C	17: 7,560,266 (GRCm39)	L568P	probably damaging	Het
Seh1l	T	C	18: 67,917,054 (GRCm39)	S78P	probably damaging	Het
Serpinb3b	A	T	1: 107,083,573 (GRCm39)		probably null	Het
Setd1a	T	C	7: 127,387,512 (GRCm39)		probably benign	Het
Setx	G	T	2: 29,030,401 (GRCm39)		probably null	Het
Sfi1	TCGC	TC	11: 3,096,254 (GRCm39)		probably null	Het
Shc2	G	T	10: 79,467,136 (GRCm39)	R146S	probably damaging	Het
Skap2	T	C	6: 51,886,348 (GRCm39)	T5A	probably benign	Het
Slc35a3	T	C	3: 116,480,983 (GRCm39)	I93M	probably benign	Het
Sohlh1	C	T	2: 25,733,359 (GRCm39)	G295D	probably damaging	Het
Sult2a8	A	C	7: 14,150,208 (GRCm39)	C168G	probably benign	Het
Tbc1d4	T	C	14: 101,685,124 (GRCm39)	I1176V	possibly damaging	Het
Thada	A	T	17: 84,744,104 (GRCm39)	F735I	possibly damaging	Het
Tle1	A	C	4: 72,058,068 (GRCm39)	H52Q	probably damaging	Het
Tmem101	A	T	11: 102,044,155 (GRCm39)	V244E	probably damaging	Het
Tnfrsf26	C	A	7: 143,171,668 (GRCm39)	C95F	probably damaging	Het
Uspl1	T	C	5: 149,150,842 (GRCm39)	S482P	probably benign	Het
Vmn2r118	G	T	17: 55,917,935 (GRCm39)	N192K	probably benign	Het
Vmn2r14	C	T	5: 109,368,195 (GRCm39)	V266I	possibly damaging	Het
Vmn2r51	A	G	7: 9,834,249 (GRCm39)	I263T	probably damaging	Het
Zfp937	T	A	2: 150,080,967 (GRCm39)	C332*	probably null	Het
Zscan21	T	A	5: 138,123,470 (GRCm39)	S50T	probably benign	Het

Other mutations in Kcnq5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00864:Kcnq5	APN	1	21,575,987 (GRCm39)	missense	probably damaging	1.00
IGL01603:Kcnq5	APN	1	21,575,564 (GRCm39)	missense	possibly damaging	0.94
IGL02326:Kcnq5	APN	1	21,472,816 (GRCm39)	missense	probably benign	0.17
IGL02624:Kcnq5	APN	1	21,472,654 (GRCm39)	missense	probably benign	0.27
IGL03151:Kcnq5	APN	1	21,605,293 (GRCm39)	missense	probably damaging	1.00
IGL03367:Kcnq5	APN	1	21,473,289 (GRCm39)	missense	probably damaging	1.00
PIT1430001:Kcnq5	UTSW	1	21,605,405 (GRCm39)	missense	probably damaging	1.00
R0705:Kcnq5	UTSW	1	21,605,401 (GRCm39)	missense	probably damaging	1.00
R0798:Kcnq5	UTSW	1	22,031,399 (GRCm39)	splice site	probably null
R1263:Kcnq5	UTSW	1	21,549,602 (GRCm39)	missense	probably damaging	1.00
R1445:Kcnq5	UTSW	1	21,475,248 (GRCm39)	missense	probably benign	0.01
R1465:Kcnq5	UTSW	1	21,539,692 (GRCm39)	critical splice donor site	probably null
R1497:Kcnq5	UTSW	1	21,472,610 (GRCm39)	missense	possibly damaging	0.82
R1515:Kcnq5	UTSW	1	21,472,905 (GRCm39)	missense	probably benign	0.01
R1610:Kcnq5	UTSW	1	21,527,685 (GRCm39)	missense	probably damaging	1.00
R1835:Kcnq5	UTSW	1	21,536,611 (GRCm39)	missense	probably benign	0.04
R1999:Kcnq5	UTSW	1	21,472,428 (GRCm39)	missense	probably null	0.18
R2060:Kcnq5	UTSW	1	21,531,821 (GRCm39)	missense	probably benign	0.06
R2145:Kcnq5	UTSW	1	21,575,573 (GRCm39)	missense	probably damaging	0.96
R2314:Kcnq5	UTSW	1	21,549,595 (GRCm39)	splice site	probably null
R2511:Kcnq5	UTSW	1	21,576,006 (GRCm39)	nonsense	probably null
R2697:Kcnq5	UTSW	1	21,549,656 (GRCm39)	missense	probably damaging	1.00
R2886:Kcnq5	UTSW	1	21,539,771 (GRCm39)	nonsense	probably null
R2889:Kcnq5	UTSW	1	21,472,526 (GRCm39)	missense	probably damaging	0.98
R4176:Kcnq5	UTSW	1	21,605,392 (GRCm39)	missense	probably damaging	1.00
R4609:Kcnq5	UTSW	1	21,475,292 (GRCm39)	splice site	probably null
R4720:Kcnq5	UTSW	1	21,473,274 (GRCm39)	missense	probably damaging	0.96
R4904:Kcnq5	UTSW	1	21,494,324 (GRCm39)	missense	probably damaging	0.98
R5184:Kcnq5	UTSW	1	21,472,711 (GRCm39)	missense	probably damaging	1.00
R5268:Kcnq5	UTSW	1	21,575,949 (GRCm39)	missense	probably damaging	1.00
R5373:Kcnq5	UTSW	1	22,031,795 (GRCm39)	missense	unknown
R5397:Kcnq5	UTSW	1	21,476,080 (GRCm39)	missense	probably damaging	1.00
R5473:Kcnq5	UTSW	1	21,527,626 (GRCm39)	critical splice donor site	probably null
R5490:Kcnq5	UTSW	1	21,549,692 (GRCm39)	missense	probably damaging	1.00
R5946:Kcnq5	UTSW	1	21,575,931 (GRCm39)	missense	probably damaging	1.00
R6941:Kcnq5	UTSW	1	21,476,068 (GRCm39)	missense	probably damaging	1.00
R6962:Kcnq5	UTSW	1	21,576,017 (GRCm39)	missense	probably damaging	1.00
R7201:Kcnq5	UTSW	1	21,473,099 (GRCm39)	missense	possibly damaging	0.93
R7238:Kcnq5	UTSW	1	21,472,526 (GRCm39)	missense	probably benign	0.39
R7375:Kcnq5	UTSW	1	21,539,710 (GRCm39)	missense	possibly damaging	0.82
R7584:Kcnq5	UTSW	1	21,472,545 (GRCm39)	missense	probably benign
R7780:Kcnq5	UTSW	1	22,031,555 (GRCm39)	missense	probably benign	0.43
R8043:Kcnq5	UTSW	1	21,549,644 (GRCm39)	missense	probably damaging	1.00
R8103:Kcnq5	UTSW	1	21,549,620 (GRCm39)	missense	possibly damaging	0.89
R8267:Kcnq5	UTSW	1	21,575,609 (GRCm39)	missense	probably damaging	1.00
R8363:Kcnq5	UTSW	1	21,549,648 (GRCm39)	missense	probably damaging	1.00
R8364:Kcnq5	UTSW	1	21,549,648 (GRCm39)	missense	probably damaging	1.00
R8370:Kcnq5	UTSW	1	21,549,648 (GRCm39)	missense	probably damaging	1.00
R8371:Kcnq5	UTSW	1	21,549,648 (GRCm39)	missense	probably damaging	1.00
R8372:Kcnq5	UTSW	1	21,549,648 (GRCm39)	missense	probably damaging	1.00
R8374:Kcnq5	UTSW	1	21,549,648 (GRCm39)	missense	probably damaging	1.00
R8414:Kcnq5	UTSW	1	21,549,648 (GRCm39)	missense	probably damaging	1.00
R8528:Kcnq5	UTSW	1	21,549,648 (GRCm39)	missense	probably damaging	1.00
R8542:Kcnq5	UTSW	1	21,549,648 (GRCm39)	missense	probably damaging	1.00
R8669:Kcnq5	UTSW	1	21,476,050 (GRCm39)	missense	probably damaging	1.00
R8723:Kcnq5	UTSW	1	21,575,591 (GRCm39)	missense	probably damaging	1.00
R9000:Kcnq5	UTSW	1	21,557,483 (GRCm39)	missense	probably damaging	1.00
R9020:Kcnq5	UTSW	1	21,539,463 (GRCm39)	intron	probably benign
R9152:Kcnq5	UTSW	1	21,539,692 (GRCm39)	critical splice donor site	probably null
R9426:Kcnq5	UTSW	1	21,473,118 (GRCm39)	missense	probably benign
Z1088:Kcnq5	UTSW	1	21,527,753 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGGCCTATGATTGTTAAGGAACGATGC -3'
(R):5'- TGTAACTACCCACTGAAAATGCCGAAG -3'

Sequencing Primer
(F):5'- TGTTAAGGAACGATGCCAATTC -3'
(R):5'- CGTGTCAGGGCTACACTTAAGG -3'

Posted On

2014-03-28