Mutagenetix > Incidental Mutation

Incidental Mutation 'R1470:Ulk4'

165832

Institutional Source

Beutler Lab

Gene Symbol

Ulk4

Ensembl Gene

ENSMUSG00000040936

Gene Name

unc-51-like kinase 4

Synonyms

4932415A06Rik

MMRRC Submission

039523-MU

Accession Numbers

Genbank: NM_177589; MGI: 1921622

Essential gene?

Possibly essential (E-score: 0.737) question?

Stock #

R1470 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

120955351-121277197 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 121081656 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Serine at position 1101 (T1101S)

Ref Sequence

ENSEMBL: ENSMUSP00000057960 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000051479] [ENSMUST00000051565] [ENSMUST00000171061] [ENSMUST00000171923]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000051479
AA Change: T1101S

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000057960
Gene: ENSMUSG00000040936
AA Change: T1101S

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	4	277	9.9e-26	PFAM
Pfam:Pkinase	4	280	4.6e-49	PFAM
low complexity region	949	964	N/A	INTRINSIC
low complexity region	968	985	N/A	INTRINSIC
low complexity region	1107	1119	N/A	INTRINSIC
low complexity region	1147	1161	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000051565

SMART Domains

Protein: ENSMUSP00000054833
Gene: ENSMUSG00000040936

Domain	Start	End	E-Value	Type
SCOP:d1jvpp_	1	32	9e-6	SMART
Blast:S_TKc	4	45	2e-8	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000170406

Predicted Effect

probably benign
Transcript: ENSMUST00000171061

SMART Domains

Protein: ENSMUSP00000129214
Gene: ENSMUSG00000040936

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	4	277	4.3e-26	PFAM
Pfam:Pkinase	4	280	2.1e-49	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000171923
AA Change: T1101S

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000131342
Gene: ENSMUSG00000040936
AA Change: T1101S

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	4	153	3.1e-14	PFAM
Pfam:Pkinase	4	280	4.9e-50	PFAM
Pfam:Pkinase_Tyr	165	277	6.1e-10	PFAM
low complexity region	949	964	N/A	INTRINSIC
low complexity region	968	985	N/A	INTRINSIC
low complexity region	1107	1119	N/A	INTRINSIC
low complexity region	1147	1171	N/A	INTRINSIC

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.7%
3x: 98.4%
10x: 90.6%
20x: 68.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the unc-51-like serine/threonine kinase (STK) family. Members of this protein family play a role in neuronal growth and endocytosis. The encoded protein is likely involved in neurite branching, neurite elongation and neuronal migration. Genome-wide association studies (GWAS) indicate an association of variations in this gene with blood pressure and hypertension. Sequence variations in this gene may also be be associated with psychiatric disorders, including schizophrenia and bipolar disorder. Pseudogenes associated with this gene have been identified and are located on chromosome 15. [provided by RefSeq, Jul 2016]
PHENOTYPE: Homozygotes for a null allele show reduced body size, hydrocephaly, dilated brain ventricles, otitis media, and premature death. Hypomorphic mice show partial corpus callosum aplasia, hydrocephaly, subcommissural organ and ependymal motile ciliary defects, aqueduct stenosis, and impaired CSF flow. [provided by MGI curators]

Allele List at MGI

All alleles(2) : Targeted, other(1) Gene trapped(1)

Other mutations in this stock

Total: 123 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4932438A13Rik	T	C	3: 36,998,331	M3060T	probably benign	Het
Aak1	T	A	6: 86,967,355	S749T	unknown	Het
Abcb4	A	T	5: 8,940,968	I843F	probably damaging	Het
Actr8	T	A	14: 29,986,969	H244Q	possibly damaging	Het
Adgrv1	A	G	13: 81,382,298	Y5886H	probably benign	Het
Agk	T	A	6: 40,386,817	W244R	probably damaging	Het
Ankrd11	C	A	8: 122,899,724	V161L	probably damaging	Het
Arap3	T	C	18: 37,989,196		probably null	Het
Armc3	A	G	2: 19,238,736	M88V	probably benign	Het
Atp13a5	G	T	16: 29,349,015	P109T	probably benign	Het
Avpr1b	T	A	1: 131,600,585	V282D	probably damaging	Het
Baz2b	T	C	2: 59,978,546	K120E	possibly damaging	Het
Cacng6	G	A	7: 3,424,888	C76Y	probably damaging	Het
Cactin	G	T	10: 81,323,151	E279*	probably null	Het
Car9	A	G	4: 43,510,222	Y268C	probably damaging	Het
Ccdc146	T	A	5: 21,319,566	I263F	probably damaging	Het
Cdh16	T	G	8: 104,618,371	S429R	probably benign	Het
Cep250	A	G	2: 155,991,075	E1639G	probably damaging	Het
Ces1d	A	T	8: 93,195,021	V38D	possibly damaging	Het
Chd1	A	T	17: 15,726,283	Q97L	possibly damaging	Het
Ciita	G	A	16: 10,514,468	D898N	possibly damaging	Het
Clstn1	A	G	4: 149,634,722	N336S	possibly damaging	Het
Cntnap5a	A	G	1: 116,259,519	D607G	probably damaging	Het
Col1a2	G	A	6: 4,518,822		probably benign	Het
Col20a1	C	T	2: 180,994,960	H245Y	probably benign	Het
Coq8b	A	T	7: 27,252,309	T399S	probably benign	Het
Cpn2	A	G	16: 30,260,185	S233P	probably benign	Het
Cryz	G	A	3: 154,606,476	G70D	probably damaging	Het
Def6	T	A	17: 28,225,982	D451E	possibly damaging	Het
Dnah8	T	A	17: 30,747,277	C2480*	probably null	Het
Dnah9	T	C	11: 65,927,822	N3230S	probably benign	Het
Dyrk4	G	T	6: 126,916,374	S15*	probably null	Het
Erc1	T	C	6: 119,694,602	R917G	probably damaging	Het
Frem3	G	T	8: 80,611,191	V38L	probably benign	Het
Gas2l3	T	C	10: 89,413,934	I441V	probably benign	Het
Gm14393	T	A	2: 175,063,981	Y6F	probably damaging	Het
Gm1527	A	G	3: 28,915,268	K256E	possibly damaging	Het
Gm21905	G	T	5: 67,946,397		probably benign	Het
Gtf2ird1	T	A	5: 134,395,802		probably null	Het
Hmces	C	A	6: 87,936,139	T292K	probably benign	Het
Hpse2	G	A	19: 43,388,253	S20L	probably benign	Het
Ikbke	A	T	1: 131,276,487	V23E	probably null	Het
Ino80	A	T	2: 119,379,649	V1387E	probably damaging	Het
Islr	G	T	9: 58,157,306	A306D	probably damaging	Het
Jakmip1	G	A	5: 37,100,838	G276D	probably damaging	Het
Jchain	A	G	5: 88,526,120	V55A	probably benign	Het
Kalrn	T	C	16: 34,187,471	K1350E	probably damaging	Het
Kansl1l	T	C	1: 66,801,997	Q48R	possibly damaging	Het
Kmt5a	T	C	5: 124,447,271	L23P	probably damaging	Het
Lrba	C	T	3: 86,737,142	H381Y	probably damaging	Het
Lrrc32	T	C	7: 98,499,357	V448A	probably benign	Het
Mapkbp1	T	C	2: 120,017,820	M617T	probably damaging	Het
Mfap1a	T	C	2: 121,502,801	M50V	probably benign	Het
Mgam	G	T	6: 40,759,128	A854S	probably damaging	Het
Myo18b	C	A	5: 112,693,033	R2298L	probably damaging	Het
Myo1h	T	A	5: 114,319,704	M92K	probably damaging	Het
Nlrp2	T	A	7: 5,300,951	T192S	probably benign	Het
Nr2f1	A	T	13: 78,198,165	Y137N	possibly damaging	Het
Nup98	T	A	7: 102,147,306	D841V	probably damaging	Het
Nvl	A	G	1: 181,139,262	V59A	probably damaging	Het
Ogdhl	C	A	14: 32,346,788	N948K	probably damaging	Het
Olfr530	A	G	7: 140,373,113	S166P	probably benign	Het
Olfr538	A	G	7: 140,574,749	T199A	probably benign	Het
Olfr578	A	C	7: 102,984,323	Y280*	probably null	Het
Olfr743	T	C	14: 50,533,702	S97P	possibly damaging	Het
Osgin1	G	A	8: 119,444,965	R166H	probably damaging	Het
Palb2	G	T	7: 122,107,524	Y740*	probably null	Het
Palb2	A	T	7: 122,107,523	F741I	probably benign	Het
Parvb	G	A	15: 84,271,308	D65N	probably benign	Het
Parvb	G	A	15: 84,271,252	G46D	probably damaging	Het
Pcsk2	A	T	2: 143,546,518	K10*	probably null	Het
Pde3a	C	T	6: 141,466,206	A502V	probably benign	Het
Pfas	T	C	11: 68,991,359	I893V	probably benign	Het
Pla2g4a	A	T	1: 149,840,720	D663E	probably damaging	Het
Prickle2	G	A	6: 92,458,602	P6L	probably damaging	Het
Prx	T	A	7: 27,517,601	M648K	probably benign	Het
Ptpn21	T	C	12: 98,688,476	N744S	probably benign	Het
Ptprq	C	T	10: 107,718,574	V97M	probably damaging	Het
Pvr	T	C	7: 19,918,624	E122G	possibly damaging	Het
Racgap1	T	C	15: 99,639,775	K15E	probably damaging	Het
Rock1	C	T	18: 10,136,091		probably null	Het
Rorc	T	A	3: 94,397,302	Y331*	probably null	Het
Rpl37	T	C	15: 5,118,614	V91A	probably benign	Het
Rrp36	T	A	17: 46,672,380	K103*	probably null	Het
Ryr3	T	A	2: 112,653,007	M4142L	probably benign	Het
Sash1	A	T	10: 8,789,593	L125H	probably damaging	Het
Scn5a	T	C	9: 119,536,475	M369V	possibly damaging	Het
Sfi1	C	CT	11: 3,146,255		probably null	Het
Sfi1	TCGC	TC	11: 3,146,254		probably null	Het
Siglec1	A	T	2: 131,070,387	N1678K	probably benign	Het
Slc15a5	A	T	6: 138,072,994	V141E	probably benign	Het
Slc8a3	A	T	12: 81,199,710	H856Q	probably benign	Het
Sptlc2	T	A	12: 87,355,640	M171L	probably benign	Het
Srcap	T	A	7: 127,559,727		probably benign	Het
St6gal2	A	G	17: 55,490,943	D310G	probably damaging	Het
Susd2	T	A	10: 75,638,054	D689V	probably damaging	Het
Suz12	A	T	11: 80,019,732	E303V	possibly damaging	Het
Taldo1	C	A	7: 141,398,587	T150K	probably damaging	Het
Tg	T	A	15: 66,849,463	F274I	possibly damaging	Het
Tmem151b	T	C	17: 45,545,737	D259G	probably damaging	Het
Tmem179	G	T	12: 112,501,854	H64Q	probably benign	Het
Tmem236	A	G	2: 14,218,921	T174A	probably benign	Het
Tnc	A	T	4: 63,966,574	N1821K	probably damaging	Het
Tnfrsf11a	A	G	1: 105,825,048	N261S	probably damaging	Het
Trank1	C	A	9: 111,343,232	F96L	possibly damaging	Het
Trim56	T	A	5: 137,113,163	I500F	probably damaging	Het
Ttc30b	G	T	2: 75,937,811	S199R	probably benign	Het
Ttll5	A	G	12: 85,879,394	I321V	possibly damaging	Het
Ttn	C	A	2: 76,778,023	W17852L	probably damaging	Het
Twnk	G	A	19: 45,009,381	V450M	probably damaging	Het
Uba52	A	G	8: 70,509,556	I127T	possibly damaging	Het
Ubr4	T	A	4: 139,421,226		probably null	Het
Uggt1	A	T	1: 36,176,796	M130K	probably benign	Het
Urb1	A	G	16: 90,752,014	S2269P	probably benign	Het
Ush2a	G	T	1: 188,400,206	R875L	probably benign	Het
Usp9y	T	A	Y: 1,332,471	H1624L	probably benign	Het
Vipr1	T	C	9: 121,665,520	L308S	possibly damaging	Het
Xdh	T	G	17: 73,891,112	K1260T	probably damaging	Het
Yipf4	A	G	17: 74,493,968	I94V	probably benign	Het
Zfhx4	A	G	3: 5,413,146	*3582W	probably null	Het
Zfp58	T	C	13: 67,492,025	N116D	possibly damaging	Het
Zfp750	C	A	11: 121,511,993	R643L	probably benign	Het
Znfx1	A	G	2: 167,042,587	V51A	possibly damaging	Het

Other mutations in Ulk4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01122:Ulk4	APN	9	121,168,292 (GRCm38)	missense	possibly damaging	0.48
IGL01345:Ulk4	APN	9	121,208,162 (GRCm38)	missense	possibly damaging	0.48
IGL01432:Ulk4	APN	9	121,266,301 (GRCm38)	missense	probably damaging	1.00
IGL01807:Ulk4	APN	9	121,255,185 (GRCm38)	missense	probably damaging	1.00
IGL02139:Ulk4	APN	9	121,141,831 (GRCm38)	splice site	probably null
IGL02266:Ulk4	APN	9	121,081,700 (GRCm38)	missense	probably benign	0.10
IGL02511:Ulk4	APN	9	121,188,354 (GRCm38)	missense	probably damaging	1.00
IGL02546:Ulk4	APN	9	121,152,307 (GRCm38)	nonsense	probably null
IGL02687:Ulk4	APN	9	121,192,662 (GRCm38)	missense	possibly damaging	0.89
IGL03220:Ulk4	APN	9	121,145,336 (GRCm38)	missense	probably damaging	1.00
3-1:Ulk4	UTSW	9	121,255,171 (GRCm38)	missense	probably benign	0.02
R0031:Ulk4	UTSW	9	121,272,982 (GRCm38)	missense	probably damaging	1.00
R0433:Ulk4	UTSW	9	121,044,819 (GRCm38)	missense	probably benign	0.27
R0513:Ulk4	UTSW	9	121,152,325 (GRCm38)	missense	probably benign	0.13
R0524:Ulk4	UTSW	9	121,252,651 (GRCm38)	critical splice donor site	probably null
R1268:Ulk4	UTSW	9	121,257,074 (GRCm38)	splice site	probably benign
R1439:Ulk4	UTSW	9	121,266,258 (GRCm38)	missense	possibly damaging	0.58
R1470:Ulk4	UTSW	9	121,081,656 (GRCm38)	missense	probably benign	0.00
R1531:Ulk4	UTSW	9	121,044,775 (GRCm38)	missense	probably damaging	0.97
R1595:Ulk4	UTSW	9	121,044,838 (GRCm38)	missense	probably damaging	0.96
R1620:Ulk4	UTSW	9	121,204,805 (GRCm38)	missense	possibly damaging	0.81
R1835:Ulk4	UTSW	9	121,168,184 (GRCm38)	missense	probably null	1.00
R1966:Ulk4	UTSW	9	121,257,116 (GRCm38)	missense	probably benign
R2129:Ulk4	UTSW	9	121,152,182 (GRCm38)	missense	probably benign	0.03
R2329:Ulk4	UTSW	9	121,272,887 (GRCm38)	missense	probably damaging	1.00
R2877:Ulk4	UTSW	9	121,260,039 (GRCm38)	missense	probably benign	0.11
R2878:Ulk4	UTSW	9	121,260,039 (GRCm38)	missense	probably benign	0.11
R3734:Ulk4	UTSW	9	121,261,989 (GRCm38)	missense	probably benign	0.21
R3769:Ulk4	UTSW	9	121,263,700 (GRCm38)	missense	probably benign	0.00
R4005:Ulk4	UTSW	9	121,168,199 (GRCm38)	missense	possibly damaging	0.94
R4024:Ulk4	UTSW	9	121,044,849 (GRCm38)	missense	possibly damaging	0.86
R4321:Ulk4	UTSW	9	121,073,996 (GRCm38)	missense	probably benign	0.00
R4461:Ulk4	UTSW	9	121,156,884 (GRCm38)	missense	possibly damaging	0.83
R4537:Ulk4	UTSW	9	121,263,638 (GRCm38)	nonsense	probably null
R4542:Ulk4	UTSW	9	121,263,638 (GRCm38)	nonsense	probably null
R4572:Ulk4	UTSW	9	121,192,764 (GRCm38)	missense	probably damaging	1.00
R4647:Ulk4	UTSW	9	121,141,852 (GRCm38)	missense	probably benign	0.15
R4712:Ulk4	UTSW	9	121,244,370 (GRCm38)	missense	probably benign	0.23
R4730:Ulk4	UTSW	9	121,263,725 (GRCm38)	missense	probably benign	0.05
R4731:Ulk4	UTSW	9	121,263,638 (GRCm38)	nonsense	probably null
R4732:Ulk4	UTSW	9	121,263,638 (GRCm38)	nonsense	probably null
R4733:Ulk4	UTSW	9	121,263,638 (GRCm38)	nonsense	probably null
R4737:Ulk4	UTSW	9	121,073,872 (GRCm38)	nonsense	probably null
R4781:Ulk4	UTSW	9	121,103,576 (GRCm38)	missense	probably benign	0.00
R4860:Ulk4	UTSW	9	121,250,902 (GRCm38)	missense	possibly damaging	0.68
R4926:Ulk4	UTSW	9	121,258,732 (GRCm38)	missense	probably benign	0.00
R4990:Ulk4	UTSW	9	121,192,786 (GRCm38)	missense	probably benign	0.01
R6056:Ulk4	UTSW	9	121,272,955 (GRCm38)	missense	probably damaging	1.00
R6448:Ulk4	UTSW	9	121,103,630 (GRCm38)	missense	probably damaging	0.99
R6546:Ulk4	UTSW	9	121,141,894 (GRCm38)	missense	probably damaging	1.00
R6668:Ulk4	UTSW	9	121,188,342 (GRCm38)	missense	probably damaging	1.00
R6915:Ulk4	UTSW	9	121,258,820 (GRCm38)	missense	probably benign
R6929:Ulk4	UTSW	9	121,074,015 (GRCm38)	missense	probably benign	0.02
R7069:Ulk4	UTSW	9	121,258,810 (GRCm38)	missense	probably benign	0.01
R7069:Ulk4	UTSW	9	121,266,517 (GRCm38)	missense	probably benign	0.25
R7293:Ulk4	UTSW	9	121,255,124 (GRCm38)	missense	probably damaging	1.00
R7299:Ulk4	UTSW	9	121,145,059 (GRCm38)	missense	probably benign	0.32
R7301:Ulk4	UTSW	9	121,145,059 (GRCm38)	missense	probably benign	0.32
R7337:Ulk4	UTSW	9	121,248,927 (GRCm38)	missense	probably benign	0.44
R7395:Ulk4	UTSW	9	121,255,112 (GRCm38)	missense	probably benign
R7423:Ulk4	UTSW	9	121,103,621 (GRCm38)	missense	possibly damaging	0.48
R7545:Ulk4	UTSW	9	121,141,838 (GRCm38)	missense	probably benign	0.00
R7753:Ulk4	UTSW	9	121,266,512 (GRCm38)	critical splice donor site	probably null
R7790:Ulk4	UTSW	9	121,263,668 (GRCm38)	missense	possibly damaging	0.70
R7791:Ulk4	UTSW	9	121,263,668 (GRCm38)	missense	possibly damaging	0.70
R7793:Ulk4	UTSW	9	121,263,668 (GRCm38)	missense	possibly damaging	0.70
R7834:Ulk4	UTSW	9	121,263,668 (GRCm38)	missense	possibly damaging	0.70
R7836:Ulk4	UTSW	9	121,044,819 (GRCm38)	missense	possibly damaging	0.72
R7960:Ulk4	UTSW	9	121,272,956 (GRCm38)	missense	probably damaging	1.00
R8087:Ulk4	UTSW	9	121,266,251 (GRCm38)	missense	probably damaging	0.99
R8203:Ulk4	UTSW	9	121,168,208 (GRCm38)	missense	probably damaging	0.96
R8246:Ulk4	UTSW	9	121,156,875 (GRCm38)	makesense	probably null
R8430:Ulk4	UTSW	9	121,257,078 (GRCm38)	critical splice donor site	probably null
R8841:Ulk4	UTSW	9	121,204,738 (GRCm38)	missense	probably damaging	1.00
R9014:Ulk4	UTSW	9	121,188,228 (GRCm38)	missense	probably benign	0.00
R9092:Ulk4	UTSW	9	121,073,937 (GRCm38)	missense
R9126:Ulk4	UTSW	9	121,261,922 (GRCm38)	missense	probably damaging	0.99
R9176:Ulk4	UTSW	9	121,145,062 (GRCm38)	missense	probably benign
R9235:Ulk4	UTSW	9	121,152,151 (GRCm38)	missense	probably benign	0.13
R9713:Ulk4	UTSW	9	121,044,796 (GRCm38)	nonsense	probably null
X0024:Ulk4	UTSW	9	121,192,753 (GRCm38)	missense	probably damaging	1.00
X0066:Ulk4	UTSW	9	121,262,606 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCCGTAGCGTACATCCCTTGAAAAC -3'
(R):5'- TGAGGGCTTGAGGCTTGGAAAC -3'

Sequencing Primer
(F):5'- GTACATCCCTTGAAAACACCACAG -3'
(R):5'- GAAACCTTCATTTTAAGTGACTTCCC -3'

Posted On

2014-03-28