Mutagenetix > Incidental Mutation

Incidental Mutation 'R1466:Slco4c1'

165991

Institutional Source

Beutler Lab

Gene Symbol

Slco4c1

Ensembl Gene

ENSMUSG00000040693

Gene Name

solute carrier organic anion transporter family, member 4C1

Synonyms

OATP-H, OATP4C1, PRO2176, OATP-M1, SLC21A20, C330017E21Rik

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.340) question?

Stock #

R1466 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

96816270-96872171 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 96841172 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Serine to Threonine at position 322 (S322T)

Ref Sequence

ENSEMBL: ENSMUSP00000071875 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000071985]

AlphaFold

Q8BGD4

Predicted Effect

probably damaging
Transcript: ENSMUST00000071985
AA Change: S322T

PolyPhen 2 Score 0.968 (Sensitivity: 0.77; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000071875
Gene: ENSMUSG00000040693
AA Change: S322T

Domain	Start	End	E-Value	Type
low complexity region	55	72	N/A	INTRINSIC
Pfam:MFS_1	102	483	1.3e-19	PFAM
KAZAL	503	547	1.67e-1	SMART
transmembrane domain	666	688	N/A	INTRINSIC

Coding Region Coverage

1x: 99.4%
3x: 97.9%
10x: 90.8%
20x: 71.5%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] SLCO4C1 belongs to the organic anion transporter (OATP) family. OATPs are involved in the membrane transport of bile acids, conjugated steroids, thyroid hormone, eicosanoids, peptides, and numerous drugs in many tissues (Mikkaichi et al., 2004 [PubMed 14993604]).[supplied by OMIM, Mar 2008]

Allele List at MGI

Other mutations in this stock

Total: 108 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abhd15	C	T	11: 77,515,410	A71V	probably damaging	Het
Adamts12	T	C	15: 11,311,359	F1234S	probably benign	Het
Ahnak	A	G	19: 9,015,875	D4841G	probably damaging	Het
Akap13	T	C	7: 75,729,049	S2095P	possibly damaging	Het
Ampd2	T	C	3: 108,080,337		probably null	Het
Arhgef17	G	T	7: 100,929,659	P694Q	possibly damaging	Het
Arrdc1	T	C	2: 24,925,795	I398V	probably benign	Het
Ash1l	T	C	3: 89,052,065	Y2250H	probably damaging	Het
Aspg	A	G	12: 112,121,852	N385D	probably benign	Het
Atxn3	G	A	12: 101,926,499	R319C	possibly damaging	Het
BC005561	T	A	5: 104,518,257	I215N	probably damaging	Het
Brca2	G	A	5: 150,552,258	A2478T	probably damaging	Het
C1s1	C	T	6: 124,531,131	C633Y	probably damaging	Het
C8g	C	T	2: 25,500,216	A6T	probably benign	Het
Cbl	A	T	9: 44,154,244	V706E	probably benign	Het
Cfhr1	C	T	1: 139,557,574	E45K	probably benign	Het
Chd7	G	A	4: 8,840,561		probably null	Het
Chek1	G	T	9: 36,725,857	A2E	probably damaging	Het
Cntnap1	C	A	11: 101,180,360	F366L	probably damaging	Het
Corin	C	T	5: 72,302,790		probably null	Het
Crb2	T	C	2: 37,783,388	Y99H	probably damaging	Het
Ctdspl2	G	A	2: 122,003,929	R332K	probably benign	Het
Cym	G	A	3: 107,213,458	T277I	probably damaging	Het
Cyp2d11	C	T	15: 82,391,735	C215Y	probably benign	Het
Dido1	G	A	2: 180,662,328	P1261L	probably damaging	Het
Dnah10	T	A	5: 124,763,096	Y1265N	probably benign	Het
Dtx3l	G	A	16: 35,932,728	L503F	probably damaging	Het
Efhb	A	G	17: 53,437,178	F462L	probably damaging	Het
Enpep	T	A	3: 129,319,448	T203S	probably damaging	Het
Fat3	A	C	9: 16,375,482	V915G	probably damaging	Het
Fbln7	A	G	2: 128,877,429	T49A	probably benign	Het
Fcho1	C	T	8: 71,712,560	A418T	probably benign	Het
Fgf14	T	A	14: 124,676,539	K60M	probably benign	Het
Galnt4	A	G	10: 99,108,709	R99G	probably benign	Het
Gimap4	C	A	6: 48,691,282	Q196K	probably benign	Het
Glcci1	C	T	6: 8,537,964	T6I	probably damaging	Het
Gm10110	A	T	14: 89,898,075		noncoding transcript	Het
Gm4884	A	G	7: 41,043,128	K174E	probably damaging	Het
Gm6583	C	T	5: 112,354,764	G358D	probably benign	Het
Grip2	A	T	6: 91,788,443	D19E	probably damaging	Het
Grk4	T	C	5: 34,694,750	S113P	probably benign	Het
Hectd3	G	A	4: 116,996,566	E220K	probably damaging	Het
Helz2	G	A	2: 181,236,297	P903S	probably damaging	Het
Hydin	T	A	8: 110,532,953	V2519E	possibly damaging	Het
Ints11	G	A	4: 155,888,110		probably null	Het
Kif1a	A	G	1: 93,054,929	W718R	possibly damaging	Het
Kif1b	A	T	4: 149,223,252	Y839N	probably damaging	Het
Kif20b	T	A	19: 34,950,599	V1047D	probably benign	Het
Klhl23	T	C	2: 69,833,888	I527T	probably damaging	Het
Klra10	T	A	6: 130,279,315	R125S	probably damaging	Het
Klra10	T	C	6: 130,279,431	N87D	probably damaging	Het
Lars	G	A	18: 42,210,050	R1101C	probably damaging	Het
Lcn4	G	A	2: 26,668,576	P166L	probably damaging	Het
Letmd1	T	A	15: 100,472,542		probably null	Het
Map4k2	G	T	19: 6,341,917	W87L	probably damaging	Het
Mccc1	A	G	3: 35,974,286	V457A	probably benign	Het
Mdn1	T	A	4: 32,730,788	S2886T	probably benign	Het
Mroh2b	G	T	15: 4,925,684	D720Y	probably damaging	Het
Mrpl24	T	A	3: 87,921,928	Y21*	probably null	Het
Mrps35	C	T	6: 147,055,984	T169M	probably damaging	Het
Mtcl1	T	A	17: 66,380,435	D492V	probably damaging	Het
Muc2	A	G	7: 141,748,974	Y457C	probably damaging	Het
Muc4	G	A	16: 32,753,595	G1157D	probably benign	Het
Myg1	T	A	15: 102,337,390	L275Q	probably damaging	Het
Naga	T	A	15: 82,334,788	M237L	probably null	Het
Oc90	T	A	15: 65,897,720	Y96F	probably damaging	Het
Olfr1029	T	A	2: 85,975,995	F251I	probably damaging	Het
Olfr103	A	T	17: 37,336,956	L92H	probably benign	Het
Olfr1253	C	T	2: 89,752,267	C187Y	probably damaging	Het
Olfr46	A	G	7: 140,610,969	I268V	probably benign	Het
Olfr522	A	G	7: 140,162,203	V249A	probably damaging	Het
Orc4	A	T	2: 48,909,494	C324S	possibly damaging	Het
Pcdh10	T	G	3: 45,379,974	L241R	probably damaging	Het
Pdzrn4	T	C	15: 92,770,537	S857P	probably benign	Het
Plec	C	T	15: 76,185,908	E1000K	possibly damaging	Het
Plvap	A	T	8: 71,508,481	V149D	probably benign	Het
Ppef1	C	A	X: 160,625,674		probably null	Het
Prkaa1	C	A	15: 5,178,798	P507T	probably benign	Het
Ptch1	A	G	13: 63,524,969	Y804H	probably benign	Het
R3hdm2	A	G	10: 127,476,690	I434V	probably benign	Het
Rfx5	T	A	3: 94,956,303	Y88N	probably damaging	Het
Rnase2b	A	T	14: 51,162,839	K126*	probably null	Het
Rpl3l	A	G	17: 24,730,871	I15V	probably benign	Het
Saal1	G	T	7: 46,702,545		probably null	Het
Sbpl	A	C	17: 23,953,254	D230E	unknown	Het
Scn10a	T	C	9: 119,666,490	Y322C	probably damaging	Het
Sec16a	A	T	2: 26,431,157	Y1308N	probably damaging	Het
Sis	A	T	3: 72,932,060	D824E	possibly damaging	Het
Slc25a36	A	G	9: 97,080,355	F194L	probably damaging	Het
Slc27a4	T	A	2: 29,811,190	V331E	probably damaging	Het
Slc7a11	G	T	3: 50,381,073		probably null	Het
Smarcc2	A	T	10: 128,474,245	T376S	probably damaging	Het
Srebf1	C	T	11: 60,200,702	R999H	probably benign	Het
St3gal3	A	C	4: 118,107,662	M1R	probably null	Het
Syp	A	T	X: 7,648,705		probably benign	Het
Tas1r2	A	G	4: 139,669,411	D687G	probably damaging	Het
Tekt4	A	T	17: 25,472,074	Q118L	probably benign	Het
Tph2	T	C	10: 115,079,695	N480S	probably benign	Het
Tsc2	A	T	17: 24,608,973	M839K	probably damaging	Het
Ttc22	T	C	4: 106,622,780	F77S	probably damaging	Het
Uaca	C	T	9: 60,854,321	A205V	possibly damaging	Het
Uhmk1	A	T	1: 170,208,653		probably null	Het
Usp17lc	A	G	7: 103,418,941	H481R	possibly damaging	Het
Vwa3a	A	G	7: 120,768,165	Y181C	probably damaging	Het
Wfikkn2	G	A	11: 94,238,895	T140I	probably damaging	Het
Zfp704	G	T	3: 9,447,348	T288N	possibly damaging	Het
Zfp93	T	C	7: 24,276,096	V502A	probably damaging	Het
Zzef1	C	T	11: 72,924,679	P2942S	probably damaging	Het

Other mutations in Slco4c1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00985:Slco4c1	APN	1	96841187	missense	probably damaging	0.99
IGL01510:Slco4c1	APN	1	96867953	missense	probably damaging	1.00
IGL01674:Slco4c1	APN	1	96842493	missense	probably damaging	1.00
IGL02444:Slco4c1	APN	1	96844509	missense	probably damaging	1.00
IGL03355:Slco4c1	APN	1	96842507	nonsense	probably null
H8562:Slco4c1	UTSW	1	96842485	missense	probably benign	0.01
H8786:Slco4c1	UTSW	1	96841151	missense	probably damaging	1.00
R0350:Slco4c1	UTSW	1	96828849	missense	probably benign	0.18
R0463:Slco4c1	UTSW	1	96867920	missense	possibly damaging	0.93
R0550:Slco4c1	UTSW	1	96867859	missense	probably damaging	1.00
R1122:Slco4c1	UTSW	1	96828836	missense	possibly damaging	0.89
R1205:Slco4c1	UTSW	1	96867888	missense	probably damaging	1.00
R1215:Slco4c1	UTSW	1	96828871	missense	probably damaging	1.00
R1466:Slco4c1	UTSW	1	96841172	missense	probably damaging	0.97
R1907:Slco4c1	UTSW	1	96842499	missense	probably damaging	1.00
R1960:Slco4c1	UTSW	1	96867929	missense	probably benign	0.00
R2372:Slco4c1	UTSW	1	96821200	missense	probably benign	0.00
R3424:Slco4c1	UTSW	1	96841251	missense	probably benign	0.02
R3425:Slco4c1	UTSW	1	96841251	missense	probably benign	0.02
R4292:Slco4c1	UTSW	1	96844656	critical splice acceptor site	probably null
R4656:Slco4c1	UTSW	1	96841245	missense	probably benign	0.01
R4852:Slco4c1	UTSW	1	96841228	missense	probably damaging	1.00
R4854:Slco4c1	UTSW	1	96841228	missense	probably damaging	1.00
R4865:Slco4c1	UTSW	1	96841228	missense	probably damaging	1.00
R4867:Slco4c1	UTSW	1	96841228	missense	probably damaging	1.00
R4898:Slco4c1	UTSW	1	96837512	missense	probably damaging	1.00
R4900:Slco4c1	UTSW	1	96841228	missense	probably damaging	1.00
R5023:Slco4c1	UTSW	1	96841228	missense	probably damaging	1.00
R5074:Slco4c1	UTSW	1	96841228	missense	probably damaging	1.00
R5348:Slco4c1	UTSW	1	96842529	missense	probably damaging	0.99
R5356:Slco4c1	UTSW	1	96832110	missense	probably damaging	1.00
R5471:Slco4c1	UTSW	1	96872045	missense	probably benign	0.34
R5683:Slco4c1	UTSW	1	96867834	missense	probably damaging	1.00
R5797:Slco4c1	UTSW	1	96819104	missense	probably benign	0.04
R5801:Slco4c1	UTSW	1	96872084	missense	probably damaging	0.96
R5837:Slco4c1	UTSW	1	96818982	missense	probably benign	0.40
R6242:Slco4c1	UTSW	1	96839283	missense	probably damaging	0.99
R7014:Slco4c1	UTSW	1	96823781	splice site	probably null
R7112:Slco4c1	UTSW	1	96841141	missense	probably damaging	1.00
R7174:Slco4c1	UTSW	1	96837598	missense	possibly damaging	0.87
R7265:Slco4c1	UTSW	1	96871793	missense	probably damaging	0.99
R7275:Slco4c1	UTSW	1	96871772	missense	probably benign	0.38
R7305:Slco4c1	UTSW	1	96828965	missense	probably damaging	1.00
R7428:Slco4c1	UTSW	1	96837520	missense	possibly damaging	0.68
R7649:Slco4c1	UTSW	1	96828942	missense	probably benign	0.03
R7980:Slco4c1	UTSW	1	96836925	missense	probably benign	0.20
R8137:Slco4c1	UTSW	1	96821245	missense	probably damaging	1.00
R8188:Slco4c1	UTSW	1	96844536	missense	probably damaging	1.00
R8488:Slco4c1	UTSW	1	96832011	missense	probably benign	0.02
R8956:Slco4c1	UTSW	1	96837517	missense	probably damaging	1.00
R8997:Slco4c1	UTSW	1	96867947	missense	probably damaging	0.99
R9001:Slco4c1	UTSW	1	96821231	missense	probably damaging	1.00
R9163:Slco4c1	UTSW	1	96836908	missense	probably damaging	1.00
R9263:Slco4c1	UTSW	1	96871784	missense	probably damaging	1.00
R9320:Slco4c1	UTSW	1	96867919	nonsense	probably null
R9513:Slco4c1	UTSW	1	96871918	missense	probably benign
Z1176:Slco4c1	UTSW	1	96821230	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGGTCCTTGAAAATTACTGACTAACGGC -3'
(R):5'- TGCTATTTGACTCGTGATGGCTTCC -3'

Sequencing Primer
(F):5'- AGGATAGTTCACAGTACTCACTAAG -3'
(R):5'- TTTTAGATAAAGTCAGAGCCTACCCC -3'

Posted On

2014-03-28