Mutagenetix > Incidental Mutation

Incidental Mutation 'R1531:Kcna1'

166198

Institutional Source

Beutler Lab

Gene Symbol

Kcna1

Ensembl Gene

ENSMUSG00000047976

Gene Name

potassium voltage-gated channel, shaker-related subfamily, member 1

Synonyms

mouse brain potassium channel protein-1, MBK1, Shak, Kv1.1, Mk-1, mceph

MMRRC Submission

039570-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.445) question?

Stock #

R1531 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

126640397-126646384 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 126642067 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 430 (V430A)

Ref Sequence

ENSEMBL: ENSMUSP00000144947 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000055168] [ENSMUST00000203094]

AlphaFold

P16388

Predicted Effect

probably benign
Transcript: ENSMUST00000055168
AA Change: V430A

PolyPhen 2 Score 0.301 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000055225
Gene: ENSMUSG00000047976
AA Change: V430A

Domain	Start	End	E-Value	Type
BTB	37	137	2.44e-10	SMART
Pfam:Ion_trans	166	419	1.4e-52	PFAM
Pfam:Ion_trans_2	327	412	1.3e-15	PFAM
low complexity region	437	452	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000203094
AA Change: V430A

PolyPhen 2 Score 0.301 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000144947
Gene: ENSMUSG00000047976
AA Change: V430A

Domain	Start	End	E-Value	Type
BTB	37	137	2.44e-10	SMART
Pfam:Ion_trans	166	419	1.4e-52	PFAM
Pfam:Ion_trans_2	327	412	1.3e-15	PFAM
low complexity region	437	452	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000205171

Coding Region Coverage

1x: 99.0%
3x: 98.1%
10x: 95.6%
20x: 90.3%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a voltage-gated delayed potassium channel that is phylogenetically related to the Drosophila Shaker channel. The encoded protein has six putative transmembrane segments (S1-S6), and the loop between S5 and S6 forms the pore and contains the conserved selectivity filter motif (GYGD). The functional channel is a homotetramer. The N-terminus of the channel is associated with beta subunits that can modify the inactivation properties of the channel as well as affect expression levels. The C-terminus of the channel is complexed to a PDZ domain protein that is responsible for channel targeting. Mutations in this gene have been associated with myokymia with periodic ataxia (AEMK). [provided by RefSeq, Jul 2008]
PHENOTYPE: Various mutations at this allele have diverse affects including behavioral abnormalities, megencephaly, and in one case, embryonic lethality. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 85 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700021F05Rik	A	G	10: 43,525,320 (GRCm38)	V211A	probably benign	Het
Agtpbp1	T	A	13: 59,500,634 (GRCm38)		probably null	Het
Aldh3b2	T	G	19: 3,977,543 (GRCm38)	F28C	probably damaging	Het
Apaf1	T	C	10: 91,054,521 (GRCm38)	N540S	probably damaging	Het
Apob	T	C	12: 7,997,880 (GRCm38)	I953T	possibly damaging	Het
Arhgef1	A	G	7: 24,924,998 (GRCm38)	T816A	probably damaging	Het
Arid4a	T	A	12: 71,076,005 (GRCm38)	F1053L	probably benign	Het
Atxn1l	A	C	8: 109,732,059 (GRCm38)	F524V	probably damaging	Het
Cad	T	A	5: 31,076,219 (GRCm38)	M1874K	probably benign	Het
Ccdc40	G	A	11: 119,263,189 (GRCm38)	V1096I	probably benign	Het
Ccdc93	A	G	1: 121,480,822 (GRCm38)	D358G	probably benign	Het
Cd96	T	C	16: 46,117,806 (GRCm38)	T99A	probably benign	Het
Cdc42ep3	A	T	17: 79,335,044 (GRCm38)	M149K	probably benign	Het
Cog4	A	G	8: 110,879,721 (GRCm38)	E613G	probably benign	Het
Crebbp	A	T	16: 4,084,517 (GRCm38)	I2286N	probably benign	Het
Csf1	T	C	3: 107,748,338 (GRCm38)	E459G	possibly damaging	Het
Csrp2	A	T	10: 110,935,205 (GRCm38)	Y57F	probably benign	Het
Ctdspl	C	T	9: 119,040,582 (GRCm38)	P244L	probably damaging	Het
Cyp2c29	A	G	19: 39,324,968 (GRCm38)	R303G	probably damaging	Het
Cyp4a10	C	A	4: 115,518,435 (GRCm38)	Y38*	probably null	Het
Dmgdh	T	A	13: 93,744,411 (GRCm38)	I783N	probably damaging	Het
Efcc1	G	A	6: 87,731,166 (GRCm38)	E92K	probably benign	Het
Eif2ak4	T	A	2: 118,443,210 (GRCm38)	L872H	probably damaging	Het
Elp2	T	A	18: 24,631,404 (GRCm38)	S603T	probably benign	Het
Eml2	T	A	7: 19,196,254 (GRCm38)	L300H	probably damaging	Het
Esp3	A	G	17: 40,635,936 (GRCm38)	K50R	possibly damaging	Het
Esrp1	A	G	4: 11,379,375 (GRCm38)	F136L	probably damaging	Het
Exoc1	T	A	5: 76,559,164 (GRCm38)	D497E	probably damaging	Het
Fat3	A	G	9: 15,997,465 (GRCm38)	S2414P	probably damaging	Het
Foxj3	C	T	4: 119,620,201 (GRCm38)	P369S	unknown	Het
Gkn2	G	T	6: 87,375,939 (GRCm38)		probably null	Het
Gm17333	AAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA	AAGAAGAGAAGAGAAGAGAAGAGAAGAGAA	16: 77,852,878 (GRCm38)		noncoding transcript	Het
Gm21905	A	T	5: 67,946,381 (GRCm38)		probably benign	Het
Grhl1	T	A	12: 24,582,963 (GRCm38)		probably null	Het
Grk6	A	G	13: 55,452,154 (GRCm38)	Y221C	probably damaging	Het
Hcrtr1	T	A	4: 130,130,927 (GRCm38)	K389*	probably null	Het
Hk1	G	A	10: 62,284,784 (GRCm38)	R545C	probably damaging	Het
Hsp90b1	A	T	10: 86,696,795 (GRCm38)	I339N	probably benign	Het
Ikzf3	T	C	11: 98,490,446 (GRCm38)	R103G	probably damaging	Het
Itgad	A	C	7: 128,178,370 (GRCm38)	I141L	probably benign	Het
Jmjd6	T	A	11: 116,842,440 (GRCm38)	Y137F	probably benign	Het
Kel	A	G	6: 41,688,626 (GRCm38)	V520A	probably damaging	Het
Klhl41	G	A	2: 69,670,740 (GRCm38)	V182I	probably benign	Het
Ldhb	C	A	6: 142,501,395 (GRCm38)	M64I	probably benign	Het
Lrrc23	A	G	6: 124,776,114 (GRCm38)	S190P	possibly damaging	Het
Mb21d1	A	G	9: 78,442,481 (GRCm38)	Y200H	probably damaging	Het
Mboat2	T	C	12: 24,959,030 (GRCm38)	V445A	probably benign	Het
Mlycd	G	A	8: 119,401,519 (GRCm38)	W188*	probably null	Het
Mpp3	C	T	11: 102,008,649 (GRCm38)	E349K	probably benign	Het
Myh4	A	G	11: 67,250,540 (GRCm38)	M780V	probably benign	Het
Myh6	G	A	14: 54,956,506 (GRCm38)	R809C	probably damaging	Het
Mylip	G	A	13: 45,406,570 (GRCm38)	V161M	possibly damaging	Het
Nrp1	G	A	8: 128,425,969 (GRCm38)	V220I	probably null	Het
Nup210	A	T	6: 91,034,841 (GRCm38)	N455K	probably benign	Het
Olfr116	A	T	17: 37,624,352 (GRCm38)	Y94*	probably null	Het
Olfr583	C	A	7: 103,051,588 (GRCm38)	Q97K	probably benign	Het
Pbld2	G	T	10: 63,053,953 (GRCm38)		probably null	Het
Pclo	C	G	5: 14,521,903 (GRCm38)	P434R	probably damaging	Het
Pdlim3	A	G	8: 45,896,763 (GRCm38)	K37E	probably damaging	Het
Prkdc	T	A	16: 15,772,106 (GRCm38)	I2611N	probably benign	Het
Prr12	T	C	7: 45,028,530 (GRCm38)	D2019G	unknown	Het
Rab27a	A	G	9: 73,095,403 (GRCm38)	T205A	probably benign	Het
Rcan3	A	G	4: 135,425,284 (GRCm38)	L42P	probably damaging	Het
Rchy1	T	C	5: 91,955,615 (GRCm38)		probably null	Het
Sema6a	T	C	18: 47,248,999 (GRCm38)	H827R	probably damaging	Het
Sertad4	A	G	1: 192,850,950 (GRCm38)		probably null	Het
Smarcd1	T	A	15: 99,707,383 (GRCm38)	C282S	probably damaging	Het
Speg	A	G	1: 75,401,222 (GRCm38)	T769A	possibly damaging	Het
Syne1	T	A	10: 5,347,875 (GRCm38)	K1141*	probably null	Het
Synpo2	T	C	3: 123,117,666 (GRCm38)	E110G	probably benign	Het
Tg	T	A	15: 66,850,502 (GRCm38)	D333E	probably benign	Het
Tmem132c	A	G	5: 127,359,891 (GRCm38)	Y148C	probably damaging	Het
Tmem215	T	A	4: 40,473,965 (GRCm38)	V14E	probably damaging	Het
Tmem229b	A	G	12: 78,964,911 (GRCm38)	L82P	probably damaging	Het
Togaram1	A	G	12: 64,966,265 (GRCm38)	T97A	probably benign	Het
Trappc9	G	A	15: 72,693,548 (GRCm38)	R965*	probably null	Het
Trio	T	C	15: 27,832,985 (GRCm38)	I104V	probably benign	Het
Trp73	A	G	4: 154,063,895 (GRCm38)	F354S	probably benign	Het
Ttyh2	T	C	11: 114,686,452 (GRCm38)	L63P	probably damaging	Het
Ulk4	G	C	9: 121,044,775 (GRCm38)	P1197A	probably damaging	Het
Vmn1r176	T	C	7: 23,835,111 (GRCm38)	M206V	possibly damaging	Het
Vps8	T	A	16: 21,466,476 (GRCm38)	Y402*	probably null	Het
Zbtb41	A	G	1: 139,423,193 (GRCm38)	I15V	probably benign	Het
Zc3hav1	T	C	6: 38,307,235 (GRCm38)	I982V	possibly damaging	Het
Zmynd19	T	A	2: 24,958,111 (GRCm38)	N106K	probably benign	Het

Other mutations in Kcna1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02354:Kcna1	APN	6	126,642,906 (GRCm38)	missense	probably damaging	1.00
IGL02361:Kcna1	APN	6	126,642,906 (GRCm38)	missense	probably damaging	1.00
IGL02900:Kcna1	APN	6	126,643,094 (GRCm38)	missense	probably damaging	1.00
IGL03046:Kcna1	UTSW	6	126,642,185 (GRCm38)	missense	possibly damaging	0.84
R0694:Kcna1	UTSW	6	126,642,245 (GRCm38)	missense	probably damaging	0.99
R1530:Kcna1	UTSW	6	126,642,531 (GRCm38)	missense	probably benign
R1676:Kcna1	UTSW	6	126,642,682 (GRCm38)	missense	probably damaging	1.00
R1750:Kcna1	UTSW	6	126,642,808 (GRCm38)	missense	probably benign	0.06
R3815:Kcna1	UTSW	6	126,643,046 (GRCm38)	missense	probably damaging	1.00
R4012:Kcna1	UTSW	6	126,642,910 (GRCm38)	missense	probably benign
R4290:Kcna1	UTSW	6	126,641,875 (GRCm38)	missense	probably damaging	1.00
R4492:Kcna1	UTSW	6	126,642,275 (GRCm38)	missense	possibly damaging	0.95
R4820:Kcna1	UTSW	6	126,642,136 (GRCm38)	missense	probably damaging	1.00
R5114:Kcna1	UTSW	6	126,642,367 (GRCm38)	missense	probably damaging	0.99
R5433:Kcna1	UTSW	6	126,643,112 (GRCm38)	missense	probably damaging	1.00
R6171:Kcna1	UTSW	6	126,642,323 (GRCm38)	missense	probably damaging	1.00
R7561:Kcna1	UTSW	6	126,642,145 (GRCm38)	missense	probably damaging	1.00
R7834:Kcna1	UTSW	6	126,642,740 (GRCm38)	missense	probably benign
R8040:Kcna1	UTSW	6	126,642,740 (GRCm38)	missense	probably benign
R8167:Kcna1	UTSW	6	126,643,480 (GRCm38)	start gained	probably benign
R8311:Kcna1	UTSW	6	126,642,292 (GRCm38)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- AGGTTCGCCACTCCCCAAATTC -3'
(R):5'- ACCCTGTGACAATTGGAGGCAAG -3'

Sequencing Primer
(F):5'- CAGGAGCTTGCTCTTATTAACG -3'
(R):5'- GCAAGATCGTGGGCTCC -3'

Posted On

2014-04-13