Mutagenetix > Incidental Mutation

Incidental Mutation 'R1535:Fam13a'

166884

Institutional Source

Beutler Lab

Gene Symbol

Fam13a

Ensembl Gene

ENSMUSG00000037709

Gene Name

family with sequence similarity 13, member A

Synonyms

D430015B01Rik

MMRRC Submission

039574-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1535 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

58910521-59001487 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 58916332 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Serine at position 607 (I607S)

Ref Sequence

ENSEMBL: ENSMUSP00000134135 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000089860] [ENSMUST00000173193]

AlphaFold

Q8BGI4

Predicted Effect

probably damaging
Transcript: ENSMUST00000089860
AA Change: I635S

PolyPhen 2 Score 0.990 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000087304
Gene: ENSMUSG00000037709
AA Change: I635S

Domain	Start	End	E-Value	Type
Blast:RhoGAP	19	128	6e-27	BLAST
low complexity region	136	147	N/A	INTRINSIC
low complexity region	159	171	N/A	INTRINSIC
low complexity region	173	185	N/A	INTRINSIC
coiled coil region	336	363	N/A	INTRINSIC
low complexity region	419	433	N/A	INTRINSIC
coiled coil region	620	645	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000173193
AA Change: I607S

PolyPhen 2 Score 0.990 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000134135
Gene: ENSMUSG00000037709
AA Change: I607S

Domain	Start	End	E-Value	Type
Blast:RhoGAP	21	128	6e-27	BLAST
low complexity region	136	147	N/A	INTRINSIC
low complexity region	159	171	N/A	INTRINSIC
low complexity region	173	185	N/A	INTRINSIC
coiled coil region	336	363	N/A	INTRINSIC
low complexity region	419	433	N/A	INTRINSIC
coiled coil region	592	617	N/A	INTRINSIC

Meta Mutation Damage Score

0.2197

Coding Region Coverage

1x: 99.2%
3x: 98.3%
10x: 96.4%
20x: 93.2%

Validation Efficiency

100% (75/75)

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
3110009E18Rik	T	C	1: 120,099,203 (GRCm39)	S99P	possibly damaging	Het
Abca16	T	A	7: 120,139,928 (GRCm39)	I1530N	probably benign	Het
Abcc9	T	G	6: 142,610,361 (GRCm39)	Q601P	probably damaging	Het
Acap3	A	G	4: 155,980,631 (GRCm39)		probably benign	Het
Adamts16	A	T	13: 70,939,913 (GRCm39)		probably null	Het
Alpk2	G	C	18: 65,483,275 (GRCm39)	S244R	probably benign	Het
Aoc1l1	T	C	6: 48,952,398 (GRCm39)	F108L	probably damaging	Het
Atp8b1	C	T	18: 64,678,335 (GRCm39)	V854M	probably damaging	Het
Bend5	C	A	4: 111,316,960 (GRCm39)	D374E	probably benign	Het
Catsperg2	T	C	7: 29,397,671 (GRCm39)	D1014G	possibly damaging	Het
Ccer2	G	T	7: 28,456,822 (GRCm39)	G189*	probably null	Het
Ces2h	A	G	8: 105,741,118 (GRCm39)	T37A	probably benign	Het
Cfap68	C	T	9: 50,675,307 (GRCm39)	R40Q	probably damaging	Het
Cmah	T	C	13: 24,623,203 (GRCm39)	F213L	probably damaging	Het
Cntn2	T	C	1: 132,453,122 (GRCm39)	E390G	probably benign	Het
Coq7	C	T	7: 118,128,897 (GRCm39)	R46Q	possibly damaging	Het
Cpb1	T	A	3: 20,320,451 (GRCm39)	D136V	probably benign	Het
Cxcr2	T	C	1: 74,198,217 (GRCm39)	L237P	probably damaging	Het
Daam1	T	C	12: 71,998,692 (GRCm39)	L549P	unknown	Het
Diaph1	A	G	18: 38,029,146 (GRCm39)		probably null	Het
Dis3	G	T	14: 99,316,862 (GRCm39)	Q825K	probably damaging	Het
Dnah11	C	T	12: 117,982,465 (GRCm39)	R2568Q	probably damaging	Het
Dnah12	A	T	14: 26,538,279 (GRCm39)	R2312S	possibly damaging	Het
Dock9	C	T	14: 121,783,476 (GRCm39)	E2041K	probably damaging	Het
Eci1	A	G	17: 24,658,064 (GRCm39)	E282G	probably benign	Het
Egf	T	A	3: 129,484,427 (GRCm39)	T464S	probably benign	Het
Eif4g3	C	T	4: 137,824,613 (GRCm39)	P97S	probably damaging	Het
Emsy	A	G	7: 98,242,944 (GRCm39)	V1065A	possibly damaging	Het
Ep400	G	T	5: 110,856,032 (GRCm39)		probably benign	Het
Fam241b	A	G	10: 61,944,728 (GRCm39)	S113P	probably damaging	Het
Fbxl21	A	T	13: 56,671,340 (GRCm39)	M1L	probably benign	Het
Fnip2	C	A	3: 79,389,072 (GRCm39)	C553F	probably damaging	Het
Frmd3	G	T	4: 73,931,995 (GRCm39)		probably benign	Het
Grm4	G	A	17: 27,653,775 (GRCm39)	S470L	probably benign	Het
Gucy2e	T	A	11: 69,117,070 (GRCm39)	I784F	probably damaging	Het
H1f10	T	C	6: 87,958,130 (GRCm39)	Y70C	probably damaging	Het
Hmcn2	A	T	2: 31,310,419 (GRCm39)	T3338S	possibly damaging	Het
Idh1	C	T	1: 65,207,697 (GRCm39)	G161R	probably damaging	Het
Idi1	T	C	13: 8,936,945 (GRCm39)		probably benign	Het
Idi2l	A	T	13: 8,990,680 (GRCm39)		probably benign	Het
Kcnq2	C	T	2: 180,776,618 (GRCm39)	G90S	probably damaging	Het
Klhl29	A	G	12: 5,134,486 (GRCm39)	Y642H	probably damaging	Het
Lmtk3	T	A	7: 45,443,994 (GRCm39)		probably benign	Het
Macf1	A	T	4: 123,334,486 (GRCm39)	F4420I	probably benign	Het
Me1	A	G	9: 86,469,096 (GRCm39)	S470P	probably damaging	Het
Mfsd2b	A	G	12: 4,920,605 (GRCm39)	S71P	probably damaging	Het
Mfsd3	T	C	15: 76,586,979 (GRCm39)	L273P	probably damaging	Het
Mical1	A	G	10: 41,361,207 (GRCm39)	K757R	possibly damaging	Het
Myh9	A	T	15: 77,662,013 (GRCm39)	V782D	probably damaging	Het
Nab2	C	G	10: 127,500,916 (GRCm39)	E59Q	probably damaging	Het
Nfyc	A	T	4: 120,618,921 (GRCm39)	N244K	probably damaging	Het
Nupr2	A	G	5: 129,937,672 (GRCm39)	I80M	probably damaging	Het
Or4c15b	T	C	2: 89,113,401 (GRCm39)	I46M	probably benign	Het
Or51f1d	A	G	7: 102,700,576 (GRCm39)	T24A	probably benign	Het
Or5a1	A	G	19: 12,097,696 (GRCm39)	C115R	probably damaging	Het
Pkn3	A	G	2: 29,977,065 (GRCm39)	T602A	probably benign	Het
Prrc2b	T	A	2: 32,094,301 (GRCm39)	V561D	probably benign	Het
Psd2	T	A	18: 36,138,843 (GRCm39)	V489E	probably benign	Het
Rasal2	T	C	1: 157,057,629 (GRCm39)	T181A	probably benign	Het
Serpinb13	T	C	1: 106,909,886 (GRCm39)	M1T	probably null	Het
Sgsm1	A	T	5: 113,411,135 (GRCm39)	S864T	possibly damaging	Het
Slc5a10	C	A	11: 61,564,767 (GRCm39)	G404V	possibly damaging	Het
Slc6a1	G	T	6: 114,284,731 (GRCm39)	G263V	probably damaging	Het
Son	A	G	16: 91,456,622 (GRCm39)	K1790E	probably damaging	Het
Spata31e5	T	C	1: 28,816,505 (GRCm39)	E509G	probably damaging	Het
Syde2	A	G	3: 145,708,176 (GRCm39)		probably benign	Het
Tmem126a	T	C	7: 90,102,026 (GRCm39)	I58V	probably benign	Het
Vmn2r8	T	C	5: 108,950,040 (GRCm39)	Y269C	probably damaging	Het
Wdr87-ps	C	T	7: 29,229,004 (GRCm39)		noncoding transcript	Het
Yeats2	T	A	16: 20,008,115 (GRCm39)	S416T	probably damaging	Het
Zfp40	A	T	17: 23,394,843 (GRCm39)	H513Q	probably damaging	Het

Other mutations in Fam13a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00265:Fam13a	APN	6	58,923,111 (GRCm39)	missense	probably benign	0.03
IGL00467:Fam13a	APN	6	58,917,098 (GRCm39)	splice site	probably benign
IGL01288:Fam13a	APN	6	58,933,712 (GRCm39)	missense	probably damaging	1.00
IGL01503:Fam13a	APN	6	58,933,065 (GRCm39)	missense	probably damaging	1.00
IGL01532:Fam13a	APN	6	58,917,280 (GRCm39)	missense	probably damaging	0.96
IGL02197:Fam13a	APN	6	58,912,586 (GRCm39)	missense	possibly damaging	0.65
IGL02206:Fam13a	APN	6	58,964,204 (GRCm39)	missense	probably benign	0.00
IGL03189:Fam13a	APN	6	58,933,843 (GRCm39)	missense	probably damaging	0.99
BB009:Fam13a	UTSW	6	58,960,873 (GRCm39)	critical splice donor site	probably null
BB019:Fam13a	UTSW	6	58,960,873 (GRCm39)	critical splice donor site	probably null
R0361:Fam13a	UTSW	6	58,964,159 (GRCm39)	missense	probably benign
R0512:Fam13a	UTSW	6	58,933,684 (GRCm39)	missense	probably damaging	1.00
R0801:Fam13a	UTSW	6	58,960,997 (GRCm39)	missense	probably benign	0.01
R1222:Fam13a	UTSW	6	58,912,707 (GRCm39)	splice site	probably benign
R1378:Fam13a	UTSW	6	58,933,736 (GRCm39)	missense	probably benign	0.04
R1614:Fam13a	UTSW	6	58,917,169 (GRCm39)	missense	probably damaging	1.00
R1663:Fam13a	UTSW	6	58,931,357 (GRCm39)	nonsense	probably null
R1809:Fam13a	UTSW	6	58,942,045 (GRCm39)	critical splice donor site	probably null
R1905:Fam13a	UTSW	6	58,930,475 (GRCm39)	missense	probably damaging	1.00
R2568:Fam13a	UTSW	6	58,912,594 (GRCm39)	missense	probably damaging	1.00
R3771:Fam13a	UTSW	6	58,964,171 (GRCm39)	missense	probably benign	0.11
R4654:Fam13a	UTSW	6	58,964,152 (GRCm39)	missense	probably benign
R5244:Fam13a	UTSW	6	58,930,459 (GRCm39)	nonsense	probably null
R5488:Fam13a	UTSW	6	59,001,303 (GRCm39)	missense	probably null	1.00
R5489:Fam13a	UTSW	6	59,001,303 (GRCm39)	missense	probably null	1.00
R5712:Fam13a	UTSW	6	58,933,684 (GRCm39)	missense	probably damaging	1.00
R5729:Fam13a	UTSW	6	58,916,292 (GRCm39)	missense	probably damaging	0.99
R5969:Fam13a	UTSW	6	58,942,183 (GRCm39)	missense	probably damaging	1.00
R6074:Fam13a	UTSW	6	58,966,723 (GRCm39)	splice site	probably null
R6275:Fam13a	UTSW	6	58,931,242 (GRCm39)	missense	probably damaging	0.98
R6306:Fam13a	UTSW	6	58,917,239 (GRCm39)	missense	probably benign	0.02
R6338:Fam13a	UTSW	6	58,930,484 (GRCm39)	missense	probably damaging	1.00
R6603:Fam13a	UTSW	6	58,964,174 (GRCm39)	missense	probably benign	0.31
R7508:Fam13a	UTSW	6	58,964,269 (GRCm39)	missense	probably damaging	1.00
R7516:Fam13a	UTSW	6	58,932,248 (GRCm39)	missense	probably damaging	1.00
R7688:Fam13a	UTSW	6	58,912,692 (GRCm39)	missense	probably benign	0.05
R7728:Fam13a	UTSW	6	58,931,284 (GRCm39)	missense	possibly damaging	0.79
R7932:Fam13a	UTSW	6	58,960,873 (GRCm39)	critical splice donor site	probably null
R8080:Fam13a	UTSW	6	58,933,790 (GRCm39)	missense	probably damaging	1.00
R9494:Fam13a	UTSW	6	58,930,508 (GRCm39)	missense	probably benign	0.00
R9671:Fam13a	UTSW	6	58,951,014 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- AGCAAGCGTTCCACTCTGGAAG -3'
(R):5'- GCTGTCCATCTCAGCTCAGTTAACC -3'

Sequencing Primer
(F):5'- TCTGGAAGCACTCCTCAGATG -3'
(R):5'- CACCCACGGGGACTTTTAAATTG -3'

Posted On

2014-04-13