Mutagenetix > Incidental Mutation

Incidental Mutation 'R1518:Ift88'

167224

Institutional Source

Beutler Lab

Gene Symbol

Ift88

Ensembl Gene

ENSMUSG00000040040

Gene Name

intraflagellar transport 88

Synonyms

Oak Ridge polycystic kidneys, IFT88, Ttc10, Tg737, Tg737Rpw, fxo, polaris, orpk, TgN737Rpw

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R1518 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

57661519-57755393 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 57668085 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 29 (T29A)

Ref Sequence

ENSEMBL: ENSMUSP00000120286 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000122063] [ENSMUST00000150296]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000122063
AA Change: T29A

PolyPhen 2 Score 0.018 (Sensitivity: 0.95; Specificity: 0.80)

SMART Domains

Protein: ENSMUSP00000113768
Gene: ENSMUSG00000040040
AA Change: T29A

Domain	Start	End	E-Value	Type
Blast:TPR	197	229	8e-12	BLAST
TPR	233	266	5.35e-5	SMART
TPR	272	305	5.78e-1	SMART
TPR	485	518	5.73e-5	SMART
TPR	519	552	9.83e-4	SMART
TPR	553	586	5.19e-3	SMART
TPR	587	620	3.87e-2	SMART
Blast:TPR	621	654	7e-12	BLAST
TPR	655	688	3.76e0	SMART
low complexity region	730	748	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000150296
AA Change: T29A

PolyPhen 2 Score 0.640 (Sensitivity: 0.87; Specificity: 0.91)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154492

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.8%
20x: 94.3%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the tetratrico peptide repeat (TPR) family. Mutations of a similar gene in mouse can cause polycystic kidney disease. Two transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a null allele display early to mid-gestation lethality, random patterning of the left-right body axis, neural tube defects, pericardial sac expansion, enlarged limb buds, polydactyly, and absent embryonic node cilia. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcg4	T	A	9: 44,186,666 (GRCm39)	M493L	probably benign	Het
Abtb2	G	A	2: 103,539,629 (GRCm39)	V665I	probably benign	Het
Adamtsl1	C	G	4: 86,260,840 (GRCm39)	S1017W	probably damaging	Het
Aebp1	A	G	11: 5,821,469 (GRCm39)	T623A	possibly damaging	Het
Alox5	A	G	6: 116,390,741 (GRCm39)	F470S	probably damaging	Het
Angpt2	T	C	8: 18,755,855 (GRCm39)	E204G	probably benign	Het
Apip	A	G	2: 102,919,838 (GRCm39)	E138G	probably damaging	Het
Apob	C	T	12: 8,039,207 (GRCm39)	T466M	probably benign	Het
Atp2b3	GACAACA	GACA	X: 72,588,729 (GRCm39)		probably benign	Het
Atxn7l3	A	T	11: 102,185,340 (GRCm39)	D56E	probably benign	Het
Cacna1s	C	T	1: 136,026,289 (GRCm39)	A1092V	probably damaging	Het
Calr3	A	G	8: 73,181,044 (GRCm39)	F183L	probably damaging	Het
Cd300lb	T	A	11: 114,816,877 (GRCm39)	D55V	probably benign	Het
Chid1	A	C	7: 141,108,384 (GRCm39)	V145G	probably damaging	Het
Chst15	T	C	7: 131,871,855 (GRCm39)	N142S	probably damaging	Het
Cnot4	C	T	6: 35,028,389 (GRCm39)	R409Q	probably damaging	Het
Cope	T	G	8: 70,765,411 (GRCm39)	I287S	possibly damaging	Het
Cpd	A	T	11: 76,731,212 (GRCm39)		probably null	Het
Cux1	G	T	5: 136,337,133 (GRCm39)	T785K	probably benign	Het
Dennd2b	A	G	7: 109,156,562 (GRCm39)	S63P	probably damaging	Het
Dthd1	T	C	5: 62,979,383 (GRCm39)	S348P	probably damaging	Het
Eno3	G	T	11: 70,551,903 (GRCm39)	E64*	probably null	Het
Entpd1	T	A	19: 40,713,507 (GRCm39)	Y184*	probably null	Het
Erv3	A	T	2: 131,698,083 (GRCm39)	M92K	probably benign	Het
Flg2	T	A	3: 93,110,445 (GRCm39)	H824Q	unknown	Het
Fndc9	G	A	11: 46,128,930 (GRCm39)	G150S	probably benign	Het
Gdap1	G	A	1: 17,217,169 (GRCm39)	V43I	possibly damaging	Het
Ifi213	C	A	1: 173,417,229 (GRCm39)	L394F	probably damaging	Het
Kdm4c	A	T	4: 74,252,063 (GRCm39)	I437L	probably benign	Het
Kras	T	A	6: 145,177,977 (GRCm39)	E98D	probably benign	Het
Lcorl	C	A	5: 45,891,543 (GRCm39)	R353I	possibly damaging	Het
Lrrc4c	A	G	2: 97,460,921 (GRCm39)	I516V	probably benign	Het
Lrrc51	T	C	7: 101,564,803 (GRCm39)	D85G	probably damaging	Het
Lypd6b	G	A	2: 49,837,504 (GRCm39)	A159T	probably damaging	Het
Magel2	G	A	7: 62,030,188 (GRCm39)	V1031I	unknown	Het
Man1c1	A	T	4: 134,308,100 (GRCm39)	N338K	probably benign	Het
Mdn1	C	A	4: 32,739,977 (GRCm39)	Q3744K	probably damaging	Het
Micu3	G	T	8: 40,788,893 (GRCm39)	A135S	possibly damaging	Het
Muc4	T	C	16: 32,569,167 (GRCm39)	S76P	possibly damaging	Het
Nin	T	G	12: 70,061,547 (GRCm39)	T2106P	probably benign	Het
Nlrp4e	T	C	7: 23,021,268 (GRCm39)	I585T	probably benign	Het
Npy1r	C	T	8: 67,156,847 (GRCm39)	A89V	probably benign	Het
Or11g27	T	C	14: 50,771,622 (GRCm39)	V251A	probably damaging	Het
Or4c115	G	A	2: 88,927,944 (GRCm39)	A109V	probably benign	Het
Or52ae7	T	A	7: 103,119,249 (GRCm39)	M1K	probably null	Het
Or52n3	T	A	7: 104,530,515 (GRCm39)	Y200*	probably null	Het
Or5w13	A	T	2: 87,523,872 (GRCm39)	M118K	probably damaging	Het
Parp14	T	G	16: 35,677,008 (GRCm39)	T987P	possibly damaging	Het
Pde7b	A	T	10: 20,423,867 (GRCm39)	V3E	probably damaging	Het
Pdlim7	G	T	13: 55,656,107 (GRCm39)	Y104*	probably null	Het
Pgm2l1	A	G	7: 99,910,932 (GRCm39)	K292R	probably benign	Het
Plec	T	C	15: 76,072,401 (GRCm39)	E728G	probably damaging	Het
Plppr4	T	C	3: 117,129,152 (GRCm39)	Y105C	probably damaging	Het
Polr1c	A	T	17: 46,558,821 (GRCm39)	N23K	possibly damaging	Het
Ppp5c	A	T	7: 16,743,861 (GRCm39)	M191K	probably damaging	Het
Prkca	T	C	11: 107,869,142 (GRCm39)	D57G	probably damaging	Het
Prkcb	A	G	7: 122,143,854 (GRCm39)		probably null	Het
Prl6a1	A	T	13: 27,502,911 (GRCm39)	Q169L	probably null	Het
Prl6a1	C	A	13: 27,502,910 (GRCm39)	Q169K	possibly damaging	Het
Psmd14	G	A	2: 61,591,335 (GRCm39)	R46H	probably damaging	Het
Ptpro	T	A	6: 137,420,592 (GRCm39)	V1007D	probably damaging	Het
Ramp2	A	G	11: 101,138,408 (GRCm39)	T22A	probably benign	Het
Rbm19	AGAGGAGGAGGAGGAGGAGGA	AGAGGAGGAGGAGGAGGA	5: 120,278,345 (GRCm39)		probably benign	Het
Rbm25	A	T	12: 83,715,219 (GRCm39)	E463D	possibly damaging	Het
Retnlb	A	G	16: 48,637,678 (GRCm39)	I35V	probably benign	Het
Sestd1	A	G	2: 77,071,976 (GRCm39)	Y49H	probably damaging	Het
Setd2	T	A	9: 110,431,306 (GRCm39)	I2378N	probably damaging	Het
Slc26a1	A	T	5: 108,819,740 (GRCm39)	C486*	probably null	Het
Spef2	T	A	15: 9,667,316 (GRCm39)	I791F	probably damaging	Het
Sptb	T	C	12: 76,650,798 (GRCm39)	T1726A	possibly damaging	Het
Stk38l	T	A	6: 146,673,129 (GRCm39)	M296K	probably benign	Het
Taf5	T	C	19: 47,070,285 (GRCm39)	F624L	probably damaging	Het
Tmem30c	G	T	16: 57,086,855 (GRCm39)	T316K	probably damaging	Het
Trpm2	A	G	10: 77,778,839 (GRCm39)	S376P	possibly damaging	Het
Vmn2r82	A	T	10: 79,214,702 (GRCm39)	L228F	probably damaging	Het
Zfp607b	G	A	7: 27,398,087 (GRCm39)	C57Y	possibly damaging	Het
Zfp983	A	G	17: 21,881,269 (GRCm39)	H399R	probably damaging	Het
Zfp984	A	T	4: 147,840,002 (GRCm39)	M283K	probably benign	Het

Other mutations in Ift88

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00742:Ift88	APN	14	57,718,843 (GRCm39)	unclassified	probably benign
IGL00886:Ift88	APN	14	57,715,525 (GRCm39)	missense	probably damaging	1.00
IGL00901:Ift88	APN	14	57,681,902 (GRCm39)	missense	probably damaging	0.99
IGL01148:Ift88	APN	14	57,677,189 (GRCm39)	missense	probably benign	0.19
IGL01346:Ift88	APN	14	57,681,862 (GRCm39)	missense	probably damaging	1.00
IGL01474:Ift88	APN	14	57,715,531 (GRCm39)	missense	probably benign	0.23
IGL02213:Ift88	APN	14	57,715,502 (GRCm39)	missense	probably damaging	1.00
IGL02391:Ift88	APN	14	57,718,871 (GRCm39)	missense	possibly damaging	0.64
IGL03087:Ift88	APN	14	57,715,414 (GRCm39)	missense	probably benign	0.00
R0392:Ift88	UTSW	14	57,733,617 (GRCm39)	splice site	probably benign
R0608:Ift88	UTSW	14	57,733,678 (GRCm39)	missense	probably benign
R0718:Ift88	UTSW	14	57,754,870 (GRCm39)	missense	probably benign	0.02
R1128:Ift88	UTSW	14	57,754,476 (GRCm39)	nonsense	probably null
R1422:Ift88	UTSW	14	57,710,436 (GRCm39)	missense	probably damaging	1.00
R1422:Ift88	UTSW	14	57,675,758 (GRCm39)	splice site	probably benign
R1432:Ift88	UTSW	14	57,674,736 (GRCm39)	missense	probably benign
R1566:Ift88	UTSW	14	57,678,468 (GRCm39)	missense	probably benign	0.36
R1819:Ift88	UTSW	14	57,692,976 (GRCm39)	missense	probably damaging	1.00
R2239:Ift88	UTSW	14	57,692,961 (GRCm39)	missense	probably damaging	1.00
R2273:Ift88	UTSW	14	57,726,393 (GRCm39)	missense	possibly damaging	0.90
R2926:Ift88	UTSW	14	57,726,375 (GRCm39)	missense	probably damaging	1.00
R3033:Ift88	UTSW	14	57,715,501 (GRCm39)	missense	probably damaging	1.00
R3052:Ift88	UTSW	14	57,668,025 (GRCm39)	missense	probably damaging	1.00
R3815:Ift88	UTSW	14	57,678,438 (GRCm39)	missense	possibly damaging	0.88
R4411:Ift88	UTSW	14	57,715,436 (GRCm39)	missense	probably damaging	0.99
R4703:Ift88	UTSW	14	57,718,307 (GRCm39)	unclassified	probably benign
R4704:Ift88	UTSW	14	57,718,307 (GRCm39)	unclassified	probably benign
R4822:Ift88	UTSW	14	57,679,326 (GRCm39)	splice site	probably null
R5355:Ift88	UTSW	14	57,675,699 (GRCm39)	missense	probably benign	0.34
R5618:Ift88	UTSW	14	57,718,965 (GRCm39)	missense	possibly damaging	0.72
R6602:Ift88	UTSW	14	57,744,716 (GRCm39)	missense	probably benign	0.00
R6907:Ift88	UTSW	14	57,683,067 (GRCm39)	missense	probably benign	0.23
R7241:Ift88	UTSW	14	57,717,454 (GRCm39)	missense	probably damaging	0.97
R7243:Ift88	UTSW	14	57,667,993 (GRCm39)	critical splice acceptor site	probably null
R7736:Ift88	UTSW	14	57,683,121 (GRCm39)	missense	probably benign	0.18
R7766:Ift88	UTSW	14	57,685,111 (GRCm39)	missense	possibly damaging	0.65
R8526:Ift88	UTSW	14	57,683,126 (GRCm39)	nonsense	probably null
R9018:Ift88	UTSW	14	57,675,702 (GRCm39)	missense	probably benign	0.20
R9289:Ift88	UTSW	14	57,718,199 (GRCm39)	missense	probably benign
R9340:Ift88	UTSW	14	57,718,920 (GRCm39)	missense	probably damaging	1.00
R9369:Ift88	UTSW	14	57,685,137 (GRCm39)	missense	probably benign	0.10
R9399:Ift88	UTSW	14	57,717,385 (GRCm39)	missense	probably benign	0.00
R9485:Ift88	UTSW	14	57,675,724 (GRCm39)	missense	probably benign	0.00
R9712:Ift88	UTSW	14	57,718,853 (GRCm39)	missense	probably damaging	1.00
R9759:Ift88	UTSW	14	57,672,256 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- ACAGTTTGGGGAATTTGGAAAAGGGATT -3'
(R):5'- GCCACTGTCACTGGTAGGAATTATGAG -3'

Sequencing Primer
(F):5'- TGACTTGTAGCATGCTCTGG -3'
(R):5'- AAAGTCCTCAGGAACCAGCTG -3'

Posted On

2014-04-13