Mutagenetix > Incidental Mutation

Incidental Mutation 'R1526:Tnfaip1'

167455

Institutional Source

Beutler Lab

Gene Symbol

Tnfaip1

Ensembl Gene

ENSMUSG00000017615

Gene Name

tumor necrosis factor, alpha-induced protein 1 (endothelial)

Synonyms

Edp-1, Tnfip1, Bacurd2, Edp1

MMRRC Submission

039566-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.836) question?

Stock #

R1526 (G1)

Quality Score

174

Status

Not validated

Chromosome

Chromosomal Location

78413676-78427122 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 78420971 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Methionine at position 30 (V30M)

Ref Sequence

ENSEMBL: ENSMUSP00000103912 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000017759] [ENSMUST00000108277]

AlphaFold

O70479

Predicted Effect

possibly damaging
Transcript: ENSMUST00000017759
AA Change: V30M

PolyPhen 2 Score 0.949 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000017759
Gene: ENSMUSG00000017615
AA Change: V30M

Domain	Start	End	E-Value	Type
BTB	28	128	4.8e-18	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000108277
AA Change: V30M

PolyPhen 2 Score 0.949 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000103912
Gene: ENSMUSG00000017615
AA Change: V30M

Domain	Start	End	E-Value	Type
BTB	28	128	4.8e-18	SMART

Coding Region Coverage

1x: 99.0%
3x: 98.1%
10x: 95.7%
20x: 90.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene was identified as a gene whose expression can be induced by the tumor necrosis factor alpha (TNF) in umbilical vein endothelial cells. Studies of a similar gene in mouse suggest that the expression of this gene is developmentally regulated in a tissue-specific manner. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Asap2	G	T	12: 21,235,188 (GRCm39)	A97S	probably damaging	Het
Brd10	T	C	19: 29,712,545 (GRCm39)	K785E	probably damaging	Het
C1qtnf1	A	T	11: 118,334,616 (GRCm39)	E32V	possibly damaging	Het
Ccdc81	A	G	7: 89,525,081 (GRCm39)	L500P	probably damaging	Het
Cdo1	T	C	18: 46,861,130 (GRCm39)	E27G	probably benign	Het
Ceacam5	G	A	7: 17,484,620 (GRCm39)	G454D	probably damaging	Het
Cemip	T	C	7: 83,600,648 (GRCm39)	D991G	probably damaging	Het
Cep170	A	C	1: 176,616,071 (GRCm39)	I79S	probably damaging	Het
Cep19	A	G	16: 31,926,039 (GRCm39)	Q149R	possibly damaging	Het
Cideb	A	T	14: 55,992,619 (GRCm39)	L99*	probably null	Het
Cntnap5a	A	G	1: 116,356,207 (GRCm39)	N746S	probably benign	Het
Col12a1	T	C	9: 79,564,080 (GRCm39)	N1715S	probably benign	Het
Col3a1	T	C	1: 45,360,848 (GRCm39)	S93P	unknown	Het
Csmd3	C	A	15: 47,449,028 (GRCm39)		probably null	Het
Disp3	T	C	4: 148,344,373 (GRCm39)	I510V	probably benign	Het
Drosha	T	A	15: 12,914,070 (GRCm39)	V1115E	probably damaging	Het
Dzip3	A	C	16: 48,757,369 (GRCm39)	L888R	probably damaging	Het
Emx2	C	A	19: 59,452,442 (GRCm39)	A242E	probably benign	Het
Fto	G	A	8: 92,168,314 (GRCm39)	E256K	possibly damaging	Het
Gabrb2	A	C	11: 42,482,715 (GRCm39)	Y191S	possibly damaging	Het
Gm6526	A	T	14: 43,987,394 (GRCm39)	H110L	probably damaging	Het
Grin3b	T	A	10: 79,810,436 (GRCm39)	N647K	probably damaging	Het
Ifit2	T	G	19: 34,550,602 (GRCm39)	S47R	probably benign	Het
Il5ra	A	T	6: 106,712,781 (GRCm39)	V244E	possibly damaging	Het
Inppl1	A	G	7: 101,482,153 (GRCm39)	L141P	probably benign	Het
Iws1	A	G	18: 32,213,178 (GRCm39)	D202G	probably benign	Het
Kctd4	A	C	14: 76,200,523 (GRCm39)	I165L	probably benign	Het
Lrch3	G	A	16: 32,770,746 (GRCm39)	C116Y	probably damaging	Het
Mettl25	T	C	10: 105,668,844 (GRCm39)	T93A	possibly damaging	Het
Mgat4d	A	G	8: 84,095,666 (GRCm39)	I314V	probably benign	Het
Mrgprb4	A	T	7: 47,848,159 (GRCm39)	Y256*	probably null	Het
Myo9b	G	T	8: 71,808,408 (GRCm39)	V1672L	probably damaging	Het
Nek1	C	T	8: 61,502,975 (GRCm39)	P449L	probably benign	Het
Nucb2	G	A	7: 116,123,642 (GRCm39)		probably null	Het
Obscn	T	C	11: 58,919,412 (GRCm39)	Y6864C	probably damaging	Het
Omt2b	A	T	9: 78,235,420 (GRCm39)		probably benign	Het
Or2y3	T	A	17: 38,393,486 (GRCm39)	I128F	probably damaging	Het
Or4p18	C	T	2: 88,232,777 (GRCm39)	C167Y	probably damaging	Het
Or5ac15	G	A	16: 58,940,293 (GRCm39)	L47F	probably damaging	Het
Or6c208	A	G	10: 129,224,176 (GRCm39)	K225E	probably benign	Het
Otogl	G	T	10: 107,705,387 (GRCm39)	P647T	probably damaging	Het
Oxnad1	A	G	14: 31,824,244 (GRCm39)	D271G	probably benign	Het
Pbx3	T	C	2: 34,261,776 (GRCm39)	I53V	probably damaging	Het
Pds5b	T	A	5: 150,639,865 (GRCm39)		probably null	Het
Ppp4r3a	A	T	12: 101,007,000 (GRCm39)	D810E	probably damaging	Het
Ptpro	A	T	6: 137,438,724 (GRCm39)	D1189V	probably damaging	Het
Ryr3	T	C	2: 112,492,002 (GRCm39)	N3758S	probably damaging	Het
Scarb2	G	A	5: 92,594,200 (GRCm39)	T454M	possibly damaging	Het
Sec23a	A	C	12: 59,032,972 (GRCm39)		probably null	Het
Spire2	C	T	8: 124,095,502 (GRCm39)	A535V	probably benign	Het
Svopl	A	T	6: 38,006,570 (GRCm39)	F142L	probably benign	Het
Tas2r144	T	C	6: 42,192,674 (GRCm39)	I138T	probably benign	Het
Tbc1d15	A	G	10: 115,039,135 (GRCm39)	M535T	probably benign	Het
Topaz1	T	A	9: 122,625,108 (GRCm39)	W1398R	probably damaging	Het
Tpo	A	G	12: 30,134,694 (GRCm39)	S755P	probably damaging	Het
Ttn	G	T	2: 76,606,460 (GRCm39)	S18116R	probably damaging	Het
Vmn2r78	A	G	7: 86,571,465 (GRCm39)		probably null	Het
Wdr49	T	A	3: 75,304,227 (GRCm39)	K494M	probably benign	Het
Yeats2	A	G	16: 20,024,836 (GRCm39)	M697V	probably damaging	Het
Zfp407	G	A	18: 84,579,158 (GRCm39)	P652S	possibly damaging	Het
Zfp462	A	G	4: 55,009,002 (GRCm39)	M323V	probably benign	Het
Zfp629	G	T	7: 127,209,931 (GRCm39)	P626Q	possibly damaging	Het
Zfp804a	A	T	2: 82,088,532 (GRCm39)	Y787F	probably benign	Het

Other mutations in Tnfaip1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01081:Tnfaip1	APN	11	78,419,129 (GRCm39)	missense	probably damaging	1.00
IGL01705:Tnfaip1	APN	11	78,416,294 (GRCm39)	missense	probably benign	0.16
R0197:Tnfaip1	UTSW	11	78,420,840 (GRCm39)	splice site	probably benign
R0883:Tnfaip1	UTSW	11	78,420,840 (GRCm39)	splice site	probably benign
R1997:Tnfaip1	UTSW	11	78,420,973 (GRCm39)	missense	probably damaging	1.00
R4646:Tnfaip1	UTSW	11	78,420,008 (GRCm39)	missense	probably damaging	1.00
R4786:Tnfaip1	UTSW	11	78,421,045 (GRCm39)	missense	possibly damaging	0.87
R4960:Tnfaip1	UTSW	11	78,418,396 (GRCm39)	missense	possibly damaging	0.92
R6187:Tnfaip1	UTSW	11	78,418,372 (GRCm39)	missense	probably damaging	0.96
R7086:Tnfaip1	UTSW	11	78,416,265 (GRCm39)	missense	probably benign	0.00
R9085:Tnfaip1	UTSW	11	78,420,965 (GRCm39)	missense	probably damaging	0.97
R9469:Tnfaip1	UTSW	11	78,419,075 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- CAGCCTTGGAGTCAGCTCAAGATG -3'
(R):5'- CTCTTGCTTACAGGCACTGAGAGTATG -3'

Sequencing Primer
(F):5'- GAGTCAGCTCAAGATGCTCCC -3'
(R):5'- CACTGAGAGTATGAGGCCCTG -3'

Posted On

2014-04-13