Mutagenetix > Incidental Mutation

Incidental Mutation 'R1524:Exd1'

167694

Institutional Source

Beutler Lab

Gene Symbol

Exd1

Ensembl Gene

ENSMUSG00000048647

Gene Name

exonuclease 3'-5' domain containing 1

Synonyms

Exdl1, 4932702D22Rik

MMRRC Submission

039565-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1524 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

119516505-119547627 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 119524674 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Leucine at position 253 (F253L)

Ref Sequence

ENSEMBL: ENSMUSP00000126713 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000060009] [ENSMUST00000171024]

AlphaFold

Q8CDF7

Predicted Effect

probably damaging
Transcript: ENSMUST00000060009
AA Change: F253L

PolyPhen 2 Score 0.978 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000054980
Gene: ENSMUSG00000048647
AA Change: F253L

Domain	Start	End	E-Value	Type
low complexity region	73	84	N/A	INTRINSIC
35EXOc	134	325	2.29e-4	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000171024
AA Change: F253L

PolyPhen 2 Score 0.978 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000126713
Gene: ENSMUSG00000048647
AA Change: F253L

Domain	Start	End	E-Value	Type
low complexity region	73	84	N/A	INTRINSIC
35EXOc	134	325	2.29e-4	SMART

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.3%
20x: 95.5%

Validation Efficiency

97% (68/70)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele are fertile and viable, but exhibit defective biogenesis of antisense piRNAs and activation of transposons in male germ cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 67 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310003L06Rik	G	T	5: 87,971,689	V102L	probably benign	Het
Adck1	T	C	12: 88,402,084	Y111H	probably damaging	Het
Adcy10	G	T	1: 165,518,403	K340N	probably damaging	Het
Aebp1	T	C	11: 5,870,089	V355A	probably damaging	Het
Atp2b2	T	C	6: 113,774,201		probably benign	Het
Atrn	T	C	2: 130,957,080	V390A	probably benign	Het
Bpifc	T	A	10: 85,977,735	Q315L	probably benign	Het
C1qtnf6	T	G	15: 78,524,892		probably null	Het
Cab39l	A	G	14: 59,519,737		probably benign	Het
Capn12	T	A	7: 28,882,764		probably benign	Het
Ceacam18	A	C	7: 43,639,355	T177P	possibly damaging	Het
Ces5a	A	T	8: 93,525,665	F200I	probably damaging	Het
Cldn19	G	T	4: 119,257,051		probably null	Het
Cntnap2	A	G	6: 46,530,679	S46P	probably damaging	Het
Dchs1	A	G	7: 105,764,525	Y1028H	probably damaging	Het
Fam161a	A	G	11: 23,015,826	N40D	possibly damaging	Het
Fam81a	A	T	9: 70,125,108	I34N	probably damaging	Het
Fchsd1	A	C	18: 37,965,897		probably null	Het
Fut11	T	A	14: 20,696,166	F359I	possibly damaging	Het
Fut7	T	C	2: 25,425,147	V92A	probably damaging	Het
Grid2	C	G	6: 64,429,754	F699L	possibly damaging	Het
Grin2a	A	G	16: 9,663,603	S445P	possibly damaging	Het
H2al2b	A	C	Y: 2,720,391	F95C	probably damaging	Het
Hecw2	T	C	1: 53,851,618	D1246G	probably damaging	Het
Ifit1	A	G	19: 34,647,632	N56S	probably damaging	Het
Ldb3	C	A	14: 34,555,356	V354L	probably benign	Het
Lrig2	T	C	3: 104,463,876	Y479C	probably benign	Het
Ltn1	A	G	16: 87,381,556	V1595A	probably damaging	Het
Macf1	A	G	4: 123,432,530	V2939A	possibly damaging	Het
Mapre3	T	G	5: 30,861,917	I35S	probably damaging	Het
Med16	A	T	10: 79,898,316	L588Q	probably damaging	Het
Ncapg2	T	C	12: 116,434,578		probably benign	Het
Ncstn	C	A	1: 172,072,149	R322L	possibly damaging	Het
Ndst1	A	T	18: 60,698,504	I594N	probably damaging	Het
Ndst3	A	G	3: 123,548,906	I752T	possibly damaging	Het
Obscn	G	T	11: 59,115,855	S1185R	probably damaging	Het
Olfr1466	T	A	19: 13,342,122	C121*	probably null	Het
Olfr1500	A	T	19: 13,828,315	L27H	probably damaging	Het
Olfr303	A	G	7: 86,394,812	S229P	probably benign	Het
Otof	T	A	5: 30,379,556	D1285V	probably benign	Het
Pcnx2	A	G	8: 125,891,141	I125T	probably benign	Het
Pde4a	T	C	9: 21,201,247	S240P	probably damaging	Het
Pi15	T	C	1: 17,619,852	S126P	probably benign	Het
Pkhd1	T	C	1: 20,117,780	S3435G	probably damaging	Het
Plin1	C	A	7: 79,726,590	V133L	probably benign	Het
Pnpt1	T	A	11: 29,130,776	C7S	unknown	Het
Ppp3ca	A	T	3: 136,797,818	M51L	probably benign	Het
Primpol	G	T	8: 46,586,467		probably benign	Het
Prlr	T	C	15: 10,319,333	V116A	probably damaging	Het
Rnf139	A	G	15: 58,889,417	D35G	probably damaging	Het
Rsbn1l	T	A	5: 20,951,673	K38M	probably damaging	Het
Ryr3	T	A	2: 112,869,082	I888F	probably damaging	Het
Sec16a	C	A	2: 26,428,382	V1566F	probably damaging	Het
Sin3b	A	G	8: 72,753,287	T874A	probably benign	Het
Slc5a5	A	C	8: 70,892,334	Y110D	probably damaging	Het
Smarcd2	C	T	11: 106,267,152	V97I	probably benign	Het
St6galnac2	G	A	11: 116,684,487		probably benign	Het
Tbc1d22b	T	C	17: 29,570,611	L149P	probably damaging	Het
Tekt2	T	C	4: 126,323,649	I208V	probably benign	Het
Tenm3	A	G	8: 48,228,981	I2522T	possibly damaging	Het
Ttc37	T	A	13: 76,138,372	D891E	probably benign	Het
Ttll5	T	A	12: 85,864,568	Y233*	probably null	Het
Vcpip1	C	T	1: 9,724,502	E1215K	probably damaging	Het
Wdr4	T	C	17: 31,509,763		probably benign	Het
Zadh2	A	G	18: 84,094,706	E169G	probably benign	Het
Zfp703	G	A	8: 26,979,373	G355D	probably damaging	Het
Zfp830	T	A	11: 82,764,968	D199E	probably damaging	Het

Other mutations in Exd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01295:Exd1	APN	2	119530079	splice site	probably benign
IGL02032:Exd1	APN	2	119533467	missense	probably damaging	1.00
IGL02040:Exd1	APN	2	119540065	missense	possibly damaging	0.79
IGL02831:Exd1	APN	2	119528754	missense	probably damaging	1.00
IGL03008:Exd1	APN	2	119520381	missense	probably benign	0.01
R0350:Exd1	UTSW	2	119523566	missense	possibly damaging	0.64
R1423:Exd1	UTSW	2	119540013	splice site	probably benign
R1466:Exd1	UTSW	2	119520734	splice site	probably benign
R2011:Exd1	UTSW	2	119528663	intron	probably benign
R2026:Exd1	UTSW	2	119520305	missense	probably benign
R4711:Exd1	UTSW	2	119538751	missense	possibly damaging	0.91
R4827:Exd1	UTSW	2	119520326	missense	probably benign
R4828:Exd1	UTSW	2	119520326	missense	probably benign
R4829:Exd1	UTSW	2	119520326	missense	probably benign
R4830:Exd1	UTSW	2	119520326	missense	probably benign
R5799:Exd1	UTSW	2	119538781	missense	probably benign	0.01
R6570:Exd1	UTSW	2	119520173	missense	probably benign
R6654:Exd1	UTSW	2	119524717	critical splice acceptor site	probably null
R6907:Exd1	UTSW	2	119533476	missense	probably damaging	1.00
R7325:Exd1	UTSW	2	119520139	missense	probably benign	0.28
R7684:Exd1	UTSW	2	119520203	missense	probably damaging	1.00
R7921:Exd1	UTSW	2	119530099	missense	probably damaging	0.99
R8029:Exd1	UTSW	2	119528723	missense	probably damaging	1.00
R8428:Exd1	UTSW	2	119538867	missense	possibly damaging	0.80
R8516:Exd1	UTSW	2	119520073	missense	probably damaging	0.97
R9136:Exd1	UTSW	2	119528904	missense	probably damaging	1.00
R9390:Exd1	UTSW	2	119523699	missense	probably damaging	1.00
R9451:Exd1	UTSW	2	119524583	missense	possibly damaging	0.91
R9655:Exd1	UTSW	2	119520374	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- CACTTGCTTGCCATAGCAACACTTC -3'
(R):5'- AGTCCAGGCTGACCTCAAATTCCC -3'

Sequencing Primer
(F):5'- AAAGACTGCTCCTCGCTG -3'
(R):5'- gtcgtcttgcctctgcc -3'

Posted On

2014-04-13