Mutagenetix > Incidental Mutation

Incidental Mutation 'R1509:Map3k20'

168112

Institutional Source

Beutler Lab

Gene Symbol

Map3k20

Ensembl Gene

ENSMUSG00000004085

Gene Name

mitogen-activated protein kinase kinase kinase 20

Synonyms

MLTKalpha, Zak, MLTKbeta, B230120H23Rik

MMRRC Submission

039556-MU

Accession Numbers

Genbank: NM_023057, NM_178084; MGI: 2443258

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1509 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

72285637-72442610 bp(+) (GRCm38)

Type of Mutation

splice site

DNA Base Change (assembly)

A to T at 72364624 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000118983 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000090824] [ENSMUST00000135469]

AlphaFold

Q9ESL4

Predicted Effect

probably benign
Transcript: ENSMUST00000090824

SMART Domains

Protein: ENSMUSP00000088334
Gene: ENSMUSG00000004085

Domain	Start	End	E-Value	Type
Pfam:Pkinase	16	259	6.3e-56	PFAM
Pfam:Pkinase_Tyr	16	260	9.9e-64	PFAM
coiled coil region	277	328	N/A	INTRINSIC
SAM	336	410	5.59e-7	SMART
low complexity region	643	668	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000112073

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000121019

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000135204

Predicted Effect

probably benign
Transcript: ENSMUST00000135469

SMART Domains

Protein: ENSMUSP00000118983
Gene: ENSMUSG00000004085

Domain	Start	End	E-Value	Type
Pfam:Pkinase	16	259	1.1e-59	PFAM
Pfam:Pkinase_Tyr	16	260	7.6e-65	PFAM
coiled coil region	277	328	N/A	INTRINSIC
low complexity region	428	452	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150126

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.4%
20x: 93.1%

Validation Efficiency

99% (89/90)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the MAPKKK family of signal transduction molecules and encodes a protein with an N-terminal kinase catalytic domain, followed by a leucine zipper motif and a sterile-alpha motif (SAM). This magnesium-binding protein forms homodimers and is located in the cytoplasm. The protein mediates gamma radiation signaling leading to cell cycle arrest and activity of this protein plays a role in cell cycle checkpoint regulation in cells. The protein also has pro-apoptotic activity. Alternate transcriptional splice variants, encoding different isoforms, have been characterized. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit complete lethality at E9.5 with growth retardation. Mice homozygous for an allele lacking the SAM domain exhibit low penetrant unilateral complex hindlimb duplication phenotype. [provided by MGI curators]

Allele List at MGI

All alleles(6) : Targeted, other(2) Gene trapped(4)

Other mutations in this stock

Total: 86 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2210408I21Rik	T	C	13: 77,192,647	S132P	probably benign	Het
4930430A15Rik	A	T	2: 111,218,627	M269K	probably benign	Het
AC153895.1	T	C	6: 50,043,471	R54G	unknown	Het
Acot12	G	A	13: 91,771,875		probably null	Het
Adhfe1	T	A	1: 9,553,446	D98E	probably benign	Het
Ago2	A	G	15: 73,116,364	F594S	probably damaging	Het
Aldh18a1	A	G	19: 40,557,483	I620T	probably damaging	Het
Aspscr1	C	A	11: 120,701,516	A294D	probably damaging	Het
BC067074	A	G	13: 113,368,256	N431S	probably damaging	Het
Bod1l	C	G	5: 41,819,540	R1477T	probably damaging	Het
Ccdc18	C	A	5: 108,188,978	A741D	possibly damaging	Het
Ces4a	G	A	8: 105,138,097	G69S	probably damaging	Het
Cfap52	C	T	11: 67,938,993	V317I	probably benign	Het
Cgn	A	T	3: 94,774,258	L509Q	probably benign	Het
Crb2	A	G	2: 37,786,619	H204R	probably benign	Het
Ddx39	G	A	8: 83,719,898	V99M	probably damaging	Het
Dis3l2	T	A	1: 87,021,086	C582S	possibly damaging	Het
Dmbt1	G	A	7: 131,074,331		probably benign	Het
Dnah6	T	C	6: 73,027,442	E3846G	probably damaging	Het
Dstyk	A	G	1: 132,456,346	E655G	probably damaging	Het
Epha4	T	C	1: 77,380,886	Y825C	probably damaging	Het
Esp36	T	A	17: 38,417,282	N36I	probably damaging	Het
Fabp3	C	T	4: 130,312,387	T57I	probably benign	Het
Fem1c	A	G	18: 46,524,213	S145P	probably benign	Het
Galnt13	T	C	2: 54,733,082	I80T	probably damaging	Het
Gm10125	A	G	18: 5,583,794		noncoding transcript	Het
Gm5698	T	C	1: 30,977,647	T108A	probably benign	Het
Hipk3	A	G	2: 104,441,262	S442P	probably benign	Het
Hmcn2	T	A	2: 31,314,479	V22D	possibly damaging	Het
Hspg2	C	T	4: 137,511,241		probably benign	Het
Ide	A	G	19: 37,285,204		probably null	Het
Ifnar1	C	A	16: 91,503,496	P462Q	probably damaging	Het
Itgb2l	T	A	16: 96,426,849	I485F	probably benign	Het
Jakmip3	C	T	7: 139,027,776	R549W	possibly damaging	Het
Lrrc36	A	G	8: 105,461,129	Q680R	probably damaging	Het
Lysmd3	T	G	13: 81,669,271	H122Q	probably benign	Het
Macf1	C	A	4: 123,684,009	V61L	possibly damaging	Het
Map1b	T	C	13: 99,431,528	T1562A	unknown	Het
Mroh8	A	G	2: 157,233,205	V457A	probably benign	Het
Mrpl40	T	A	16: 18,875,409		probably null	Het
Ms4a10	C	T	19: 10,964,108	V166I	probably benign	Het
Mycl	A	G	4: 123,000,307	D300G	probably damaging	Het
Naca	T	A	10: 128,043,397		probably benign	Het
Ncoa4	T	C	14: 32,173,434	S172P	probably damaging	Het
Nfatc3	T	C	8: 106,083,854	F421L	possibly damaging	Het
Nucb1	C	A	7: 45,495,225	K301N	probably benign	Het
Olfr1451	T	A	19: 12,999,451	I155N	possibly damaging	Het
Olfr366	A	G	2: 37,219,954	H155R	probably damaging	Het
Olfr629	A	T	7: 103,741,036	M68K	probably benign	Het
Panx1	A	T	9: 15,010,045	V178E	possibly damaging	Het
Pkd1l3	G	A	8: 109,640,770	V1210I	probably damaging	Het
Polr2a	A	T	11: 69,747,213	H143Q	possibly damaging	Het
Prdm12	G	A	2: 31,654,174	R263H	probably damaging	Het
Prkdc	A	C	16: 15,731,566	K1998T	probably damaging	Het
Rab11fip1	A	T	8: 27,153,023	S583T	probably damaging	Het
Rnf157	T	A	11: 116,347,095	T567S	probably benign	Het
Rp1	T	C	1: 4,347,694	K1065R	probably damaging	Het
Rp1	A	G	1: 4,348,537	I784T	probably benign	Het
Rps10	A	C	17: 27,631,208	F150V	probably benign	Het
Rrp12	A	T	19: 41,882,200	F499I	probably damaging	Het
Sez6l2	G	A	7: 126,963,363	R604H	probably damaging	Het
Slc25a21	G	T	12: 56,858,079	Q57K	probably benign	Het
Slc27a2	A	G	2: 126,553,314	T54A	possibly damaging	Het
Slc9a9	T	A	9: 95,228,958	S610T	probably benign	Het
Smc1b	A	T	15: 85,086,134	S973T	probably benign	Het
Smc6	G	A	12: 11,279,733	S164N	possibly damaging	Het
Sp1	A	G	15: 102,407,879	T32A	possibly damaging	Het
Spen	T	C	4: 141,475,635	I1894V	probably benign	Het
Spen	T	C	4: 141,475,700	K1872R	possibly damaging	Het
Stab1	C	A	14: 31,151,584		probably benign	Het
Taar7d	T	G	10: 24,028,204	F328C	probably damaging	Het
Ticam1	A	T	17: 56,271,113	S327R	probably benign	Het
Tmem248	C	T	5: 130,229,454		probably benign	Het
Tom1	T	C	8: 75,054,631	S83P	probably damaging	Het
Txk	T	A	5: 72,699,110	Y446F	probably damaging	Het
Ubap1l	T	A	9: 65,371,955	C179S	probably benign	Het
Utrn	T	C	10: 12,455,441	E474G	possibly damaging	Het
Vmn2r14	T	C	5: 109,215,996	M685V	probably benign	Het
Vmn2r7	A	T	3: 64,716,460	Y146*	probably null	Het
Wdr1	G	A	5: 38,540,562	T220M	probably damaging	Het
Xpo7	T	C	14: 70,678,142	D726G	probably damaging	Het
Zbtb14	C	G	17: 69,387,764	I152M	probably benign	Het
Zbtb3	A	G	19: 8,803,407	D128G	probably damaging	Het
Zfp462	T	A	4: 55,007,667	D35E	probably damaging	Het
Zfp467	A	G	6: 48,438,687	S344P	possibly damaging	Het
Zfpm1	A	T	8: 122,307,546	D73V	possibly damaging	Het

Other mutations in Map3k20

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00327:Map3k20	APN	2	72412170	missense	probably damaging	1.00
IGL00333:Map3k20	APN	2	72371976	missense	probably damaging	0.99
IGL00505:Map3k20	APN	2	72389483	missense	probably damaging	1.00
IGL01472:Map3k20	APN	2	72355553	splice site	probably benign
IGL01982:Map3k20	APN	2	72298333	nonsense	probably null
IGL02556:Map3k20	APN	2	72371895	missense	probably damaging	0.98
IGL02831:Map3k20	APN	2	72371727	missense	probably damaging	1.00
3-1:Map3k20	UTSW	2	72412125	missense	probably damaging	1.00
R0765:Map3k20	UTSW	2	72371925	missense	probably damaging	1.00
R1160:Map3k20	UTSW	2	72441520	missense	probably benign	0.01
R1195:Map3k20	UTSW	2	72438218	missense	probably damaging	1.00
R1195:Map3k20	UTSW	2	72438218	missense	probably damaging	1.00
R1195:Map3k20	UTSW	2	72438218	missense	probably damaging	1.00
R1406:Map3k20	UTSW	2	72389494	missense	probably damaging	0.99
R1406:Map3k20	UTSW	2	72389494	missense	probably damaging	0.99
R1634:Map3k20	UTSW	2	72410177	nonsense	probably null
R1723:Map3k20	UTSW	2	72389492	missense	probably damaging	1.00
R1986:Map3k20	UTSW	2	72441294	nonsense	probably null
R2014:Map3k20	UTSW	2	72438260	missense	probably benign	0.00
R2086:Map3k20	UTSW	2	72398385	missense	probably benign	0.01
R2311:Map3k20	UTSW	2	72368440	missense	probably damaging	1.00
R2655:Map3k20	UTSW	2	72433420	missense	probably damaging	1.00
R3150:Map3k20	UTSW	2	72371992	missense	probably damaging	1.00
R3781:Map3k20	UTSW	2	72402355	intron	probably benign
R3950:Map3k20	UTSW	2	72438300	missense	probably damaging	0.99
R3951:Map3k20	UTSW	2	72438300	missense	probably damaging	0.99
R3952:Map3k20	UTSW	2	72438300	missense	probably damaging	0.99
R3981:Map3k20	UTSW	2	72438227	missense	probably damaging	0.99
R3982:Map3k20	UTSW	2	72438227	missense	probably damaging	0.99
R3983:Map3k20	UTSW	2	72438227	missense	probably damaging	0.99
R4011:Map3k20	UTSW	2	72384124	splice site	probably benign
R4180:Map3k20	UTSW	2	72441571	missense	probably damaging	0.97
R4790:Map3k20	UTSW	2	72441704	missense	probably benign
R4895:Map3k20	UTSW	2	72402356	intron	probably benign
R4943:Map3k20	UTSW	2	72371918	missense	possibly damaging	0.90
R4983:Map3k20	UTSW	2	72402067	missense	probably benign	0.00
R5023:Map3k20	UTSW	2	72402345	intron	probably benign
R5157:Map3k20	UTSW	2	72438214	missense	probably benign	0.00
R5703:Map3k20	UTSW	2	72402170	missense	probably benign	0.00
R6134:Map3k20	UTSW	2	72410159	missense	probably damaging	0.99
R6322:Map3k20	UTSW	2	72433470	missense	possibly damaging	0.95
R6418:Map3k20	UTSW	2	72402113	missense	probably benign	0.15
R6449:Map3k20	UTSW	2	72398414	missense	probably damaging	1.00
R6495:Map3k20	UTSW	2	72368419	missense	probably damaging	1.00
R6508:Map3k20	UTSW	2	72441909	missense	probably benign	0.08
R7016:Map3k20	UTSW	2	72378635	missense	probably damaging	1.00
R7173:Map3k20	UTSW	2	72441414	missense	probably benign	0.06
R7319:Map3k20	UTSW	2	72364718	missense	probably damaging	1.00
R7635:Map3k20	UTSW	2	72402004	missense	probably benign	0.12
R7641:Map3k20	UTSW	2	72398361	missense	probably damaging	1.00
R7698:Map3k20	UTSW	2	72364681	nonsense	probably null
R7698:Map3k20	UTSW	2	72438314	missense	probably benign	0.16
R7872:Map3k20	UTSW	2	72371754	missense	probably damaging	0.97
R8008:Map3k20	UTSW	2	72438269	missense	probably benign	0.16
R8551:Map3k20	UTSW	2	72402360	intron	probably benign
R8861:Map3k20	UTSW	2	72389467	splice site	probably benign
R9284:Map3k20	UTSW	2	72398411	nonsense	probably null
R9300:Map3k20	UTSW	2	72371913	missense	probably damaging	1.00
R9339:Map3k20	UTSW	2	72441872	missense	possibly damaging	0.92
R9635:Map3k20	UTSW	2	72402059	missense	possibly damaging	0.91
R9642:Map3k20	UTSW	2	72441837	missense	probably damaging	1.00
Z1177:Map3k20	UTSW	2	72298315	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- TAACAGGACTGCACACAGGTCCTC -3'
(R):5'- TCTCAGGTCAGAGTGGGAAGACAC -3'

Sequencing Primer
(F):5'- ctcaataaacagcatctacaaaagtc -3'
(R):5'- TGGGAAGACACTGCCCAC -3'

Posted On

2014-04-13