Mutagenetix > Incidental Mutation

Incidental Mutation 'R1509:Lrrc36'

168147

Institutional Source

Beutler Lab

Gene Symbol

Lrrc36

Ensembl Gene

ENSMUSG00000054320

Gene Name

leucine rich repeat containing 36

Synonyms

MMRRC Submission

039556-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.166) question?

Stock #

R1509 (G1)

Quality Score

110

Status

Validated

Chromosome

Chromosomal Location

105413571-105464086 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 105461129 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Arginine at position 680 (Q680R)

Ref Sequence

ENSEMBL: ENSMUSP00000149382 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000067305] [ENSMUST00000109355] [ENSMUST00000213547] [ENSMUST00000216765]

AlphaFold

Q3V0M2

Predicted Effect

probably benign
Transcript: ENSMUST00000067305
AA Change: Q559R

PolyPhen 2 Score 0.271 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000066345
Gene: ENSMUSG00000054320
AA Change: Q559R

Domain	Start	End	E-Value	Type
low complexity region	377	389	N/A	INTRINSIC
coiled coil region	478	550	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000109355
AA Change: Q682R

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000104979
Gene: ENSMUSG00000054320
AA Change: Q682R

Domain	Start	End	E-Value	Type
Pfam:LRR_8	24	84	2.9e-8	PFAM
low complexity region	500	512	N/A	INTRINSIC
coiled coil region	601	673	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000213547
AA Change: Q680R

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

Predicted Effect

probably benign
Transcript: ENSMUST00000216457

Predicted Effect

probably damaging
Transcript: ENSMUST00000216765
AA Change: Q680R

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

Meta Mutation Damage Score

0.1343

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.4%
20x: 93.1%

Validation Efficiency

99% (89/90)

Allele List at MGI

Other mutations in this stock

Total: 86 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2210408I21Rik	T	C	13: 77,192,647	S132P	probably benign	Het
4930430A15Rik	A	T	2: 111,218,627	M269K	probably benign	Het
AC153895.1	T	C	6: 50,043,471	R54G	unknown	Het
Acot12	G	A	13: 91,771,875		probably null	Het
Adhfe1	T	A	1: 9,553,446	D98E	probably benign	Het
Ago2	A	G	15: 73,116,364	F594S	probably damaging	Het
Aldh18a1	A	G	19: 40,557,483	I620T	probably damaging	Het
Aspscr1	C	A	11: 120,701,516	A294D	probably damaging	Het
BC067074	A	G	13: 113,368,256	N431S	probably damaging	Het
Bod1l	C	G	5: 41,819,540	R1477T	probably damaging	Het
Ccdc18	C	A	5: 108,188,978	A741D	possibly damaging	Het
Ces4a	G	A	8: 105,138,097	G69S	probably damaging	Het
Cfap52	C	T	11: 67,938,993	V317I	probably benign	Het
Cgn	A	T	3: 94,774,258	L509Q	probably benign	Het
Crb2	A	G	2: 37,786,619	H204R	probably benign	Het
Ddx39	G	A	8: 83,719,898	V99M	probably damaging	Het
Dis3l2	T	A	1: 87,021,086	C582S	possibly damaging	Het
Dmbt1	G	A	7: 131,074,331		probably benign	Het
Dnah6	T	C	6: 73,027,442	E3846G	probably damaging	Het
Dstyk	A	G	1: 132,456,346	E655G	probably damaging	Het
Epha4	T	C	1: 77,380,886	Y825C	probably damaging	Het
Esp36	T	A	17: 38,417,282	N36I	probably damaging	Het
Fabp3	C	T	4: 130,312,387	T57I	probably benign	Het
Fem1c	A	G	18: 46,524,213	S145P	probably benign	Het
Galnt13	T	C	2: 54,733,082	I80T	probably damaging	Het
Gm10125	A	G	18: 5,583,794		noncoding transcript	Het
Gm5698	T	C	1: 30,977,647	T108A	probably benign	Het
Hipk3	A	G	2: 104,441,262	S442P	probably benign	Het
Hmcn2	T	A	2: 31,314,479	V22D	possibly damaging	Het
Hspg2	C	T	4: 137,511,241		probably benign	Het
Ide	A	G	19: 37,285,204		probably null	Het
Ifnar1	C	A	16: 91,503,496	P462Q	probably damaging	Het
Itgb2l	T	A	16: 96,426,849	I485F	probably benign	Het
Jakmip3	C	T	7: 139,027,776	R549W	possibly damaging	Het
Lysmd3	T	G	13: 81,669,271	H122Q	probably benign	Het
Macf1	C	A	4: 123,684,009	V61L	possibly damaging	Het
Map1b	T	C	13: 99,431,528	T1562A	unknown	Het
Map3k20	A	T	2: 72,364,624		probably benign	Het
Mroh8	A	G	2: 157,233,205	V457A	probably benign	Het
Mrpl40	T	A	16: 18,875,409		probably null	Het
Ms4a10	C	T	19: 10,964,108	V166I	probably benign	Het
Mycl	A	G	4: 123,000,307	D300G	probably damaging	Het
Naca	T	A	10: 128,043,397		probably benign	Het
Ncoa4	T	C	14: 32,173,434	S172P	probably damaging	Het
Nfatc3	T	C	8: 106,083,854	F421L	possibly damaging	Het
Nucb1	C	A	7: 45,495,225	K301N	probably benign	Het
Olfr1451	T	A	19: 12,999,451	I155N	possibly damaging	Het
Olfr366	A	G	2: 37,219,954	H155R	probably damaging	Het
Olfr629	A	T	7: 103,741,036	M68K	probably benign	Het
Panx1	A	T	9: 15,010,045	V178E	possibly damaging	Het
Pkd1l3	G	A	8: 109,640,770	V1210I	probably damaging	Het
Polr2a	A	T	11: 69,747,213	H143Q	possibly damaging	Het
Prdm12	G	A	2: 31,654,174	R263H	probably damaging	Het
Prkdc	A	C	16: 15,731,566	K1998T	probably damaging	Het
Rab11fip1	A	T	8: 27,153,023	S583T	probably damaging	Het
Rnf157	T	A	11: 116,347,095	T567S	probably benign	Het
Rp1	T	C	1: 4,347,694	K1065R	probably damaging	Het
Rp1	A	G	1: 4,348,537	I784T	probably benign	Het
Rps10	A	C	17: 27,631,208	F150V	probably benign	Het
Rrp12	A	T	19: 41,882,200	F499I	probably damaging	Het
Sez6l2	G	A	7: 126,963,363	R604H	probably damaging	Het
Slc25a21	G	T	12: 56,858,079	Q57K	probably benign	Het
Slc27a2	A	G	2: 126,553,314	T54A	possibly damaging	Het
Slc9a9	T	A	9: 95,228,958	S610T	probably benign	Het
Smc1b	A	T	15: 85,086,134	S973T	probably benign	Het
Smc6	G	A	12: 11,279,733	S164N	possibly damaging	Het
Sp1	A	G	15: 102,407,879	T32A	possibly damaging	Het
Spen	T	C	4: 141,475,635	I1894V	probably benign	Het
Spen	T	C	4: 141,475,700	K1872R	possibly damaging	Het
Stab1	C	A	14: 31,151,584		probably benign	Het
Taar7d	T	G	10: 24,028,204	F328C	probably damaging	Het
Ticam1	A	T	17: 56,271,113	S327R	probably benign	Het
Tmem248	C	T	5: 130,229,454		probably benign	Het
Tom1	T	C	8: 75,054,631	S83P	probably damaging	Het
Txk	T	A	5: 72,699,110	Y446F	probably damaging	Het
Ubap1l	T	A	9: 65,371,955	C179S	probably benign	Het
Utrn	T	C	10: 12,455,441	E474G	possibly damaging	Het
Vmn2r14	T	C	5: 109,215,996	M685V	probably benign	Het
Vmn2r7	A	T	3: 64,716,460	Y146*	probably null	Het
Wdr1	G	A	5: 38,540,562	T220M	probably damaging	Het
Xpo7	T	C	14: 70,678,142	D726G	probably damaging	Het
Zbtb14	C	G	17: 69,387,764	I152M	probably benign	Het
Zbtb3	A	G	19: 8,803,407	D128G	probably damaging	Het
Zfp462	T	A	4: 55,007,667	D35E	probably damaging	Het
Zfp467	A	G	6: 48,438,687	S344P	possibly damaging	Het
Zfpm1	A	T	8: 122,307,546	D73V	possibly damaging	Het

Other mutations in Lrrc36

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R1638:Lrrc36	UTSW	8	105449641	missense	possibly damaging	0.92
R1800:Lrrc36	UTSW	8	105449765	missense	probably damaging	1.00
R2296:Lrrc36	UTSW	8	105461019	missense	possibly damaging	0.81
R4030:Lrrc36	UTSW	8	105426807	missense	probably damaging	1.00
R4059:Lrrc36	UTSW	8	105427796	missense	probably damaging	1.00
R4613:Lrrc36	UTSW	8	105449614	missense	possibly damaging	0.95
R4755:Lrrc36	UTSW	8	105452144	missense	possibly damaging	0.83
R4786:Lrrc36	UTSW	8	105455278	missense	probably benign	0.01
R4828:Lrrc36	UTSW	8	105455230	missense	probably benign	0.45
R4911:Lrrc36	UTSW	8	105426935	missense	probably benign	0.26
R5135:Lrrc36	UTSW	8	105463898	missense	probably benign
R5221:Lrrc36	UTSW	8	105443856	missense	probably damaging	0.99
R5354:Lrrc36	UTSW	8	105425364	missense	probably damaging	0.99
R5635:Lrrc36	UTSW	8	105457573	missense	probably damaging	0.97
R6793:Lrrc36	UTSW	8	105458433	missense	probably damaging	1.00
R6950:Lrrc36	UTSW	8	105425389	splice site	probably null
R6986:Lrrc36	UTSW	8	105458447	missense	probably damaging	0.99
R7231:Lrrc36	UTSW	8	105461057	missense	possibly damaging	0.46
R7326:Lrrc36	UTSW	8	105449769	missense	possibly damaging	0.92
R7349:Lrrc36	UTSW	8	105452268	missense	probably damaging	1.00
R7728:Lrrc36	UTSW	8	105449498	missense	probably benign
R7751:Lrrc36	UTSW	8	105452035	missense	possibly damaging	0.83
R7988:Lrrc36	UTSW	8	105452086	missense	possibly damaging	0.81
R8145:Lrrc36	UTSW	8	105443764	missense	probably damaging	0.96
R8195:Lrrc36	UTSW	8	105452085	missense	possibly damaging	0.90
R8380:Lrrc36	UTSW	8	105426828	missense	probably damaging	1.00
R8499:Lrrc36	UTSW	8	105449536	missense	possibly damaging	0.66
R8986:Lrrc36	UTSW	8	105449461	missense	possibly damaging	0.83
U24488:Lrrc36	UTSW	8	105449752	missense	probably benign	0.02

Predicted Primers

PCR Primer
(F):5'- TGAGCGCCACTCACAAGTGAAC -3'
(R):5'- ATTGAGTAGGTGCAACCCACCGAC -3'

Sequencing Primer
(F):5'- TCACAAGTGAACTTGGAGTCCTG -3'
(R):5'- AGTACTGAAGCAGTCCTTTGATCC -3'

Posted On

2014-04-13