Mutagenetix > Incidental Mutation

Incidental Mutation 'R1515:Bnc2'

168208

Institutional Source

Beutler Lab

Gene Symbol

Bnc2

Ensembl Gene

ENSMUSG00000028487

Gene Name

basonuclin 2

Synonyms

MMRRC Submission

039562-MU

Accession Numbers

Is this an essential gene?

Essential (E-score: 1.000) question?

Stock #

R1515 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

84275095-84675275 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 84414326 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Serine at position 104 (N104S)

Ref Sequence

ENSEMBL: ENSMUSP00000135411 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000102820] [ENSMUST00000107198] [ENSMUST00000175756] [ENSMUST00000175800] [ENSMUST00000175969] [ENSMUST00000176346] [ENSMUST00000176418] [ENSMUST00000176612] [ENSMUST00000176947] [ENSMUST00000176691]

AlphaFold

Q8BMQ3

Predicted Effect

probably null
Transcript: ENSMUST00000102820
AA Change: N146S

PolyPhen 2 Score 0.075 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000099884
Gene: ENSMUSG00000028487
AA Change: N146S

Domain	Start	End	E-Value	Type
low complexity region	362	378	N/A	INTRINSIC
low complexity region	389	400	N/A	INTRINSIC
ZnF_C2H2	469	492	4.72e-2	SMART
ZnF_C2H2	497	526	7.11e0	SMART
low complexity region	612	629	N/A	INTRINSIC
low complexity region	633	642	N/A	INTRINSIC
low complexity region	676	690	N/A	INTRINSIC
ZnF_C2H2	861	884	1.62e0	SMART
ZnF_C2H2	889	916	4.81e0	SMART
low complexity region	991	1008	N/A	INTRINSIC
low complexity region	1048	1062	N/A	INTRINSIC
ZnF_C2H2	1063	1086	1.03e-2	SMART
ZnF_C2H2	1091	1118	3.78e-1	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000107198
AA Change: N118S

PolyPhen 2 Score 0.702 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000102816
Gene: ENSMUSG00000028487
AA Change: N118S

Domain	Start	End	E-Value	Type
low complexity region	334	350	N/A	INTRINSIC
low complexity region	361	372	N/A	INTRINSIC
ZnF_C2H2	441	464	4.72e-2	SMART
ZnF_C2H2	469	498	7.11e0	SMART
low complexity region	584	601	N/A	INTRINSIC
low complexity region	605	614	N/A	INTRINSIC
low complexity region	648	662	N/A	INTRINSIC
ZnF_C2H2	833	856	1.62e0	SMART
ZnF_C2H2	861	888	4.81e0	SMART
low complexity region	963	980	N/A	INTRINSIC
low complexity region	1020	1034	N/A	INTRINSIC
ZnF_C2H2	1035	1058	1.03e-2	SMART
ZnF_C2H2	1063	1090	3.78e-1	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000123276

Predicted Effect

probably null
Transcript: ENSMUST00000175756
AA Change: N37S

PolyPhen 2 Score 0.944 (Sensitivity: 0.80; Specificity: 0.95)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000175757

Predicted Effect

probably null
Transcript: ENSMUST00000175800
AA Change: N40S

PolyPhen 2 Score 0.944 (Sensitivity: 0.80; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000134795
Gene: ENSMUSG00000028487
AA Change: N40S

Domain	Start	End	E-Value	Type
low complexity region	256	272	N/A	INTRINSIC
low complexity region	283	294	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000175969
AA Change: N57S

PolyPhen 2 Score 0.146 (Sensitivity: 0.92; Specificity: 0.87)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000176264

Predicted Effect

probably benign
Transcript: ENSMUST00000176346

SMART Domains

Protein: ENSMUSP00000134942
Gene: ENSMUSG00000028487

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000176418
AA Change: N151S

PolyPhen 2 Score 0.328 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000135569
Gene: ENSMUSG00000028487
AA Change: N151S

Domain	Start	End	E-Value	Type
low complexity region	367	383	N/A	INTRINSIC
low complexity region	394	405	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000176612
AA Change: N76S

PolyPhen 2 Score 0.831 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000135778
Gene: ENSMUSG00000028487
AA Change: N76S

Domain	Start	End	E-Value	Type
low complexity region	292	308	N/A	INTRINSIC
low complexity region	319	330	N/A	INTRINSIC
ZnF_C2H2	399	422	4.72e-2	SMART
ZnF_C2H2	427	456	7.11e0	SMART
low complexity region	542	559	N/A	INTRINSIC
low complexity region	563	572	N/A	INTRINSIC
low complexity region	606	620	N/A	INTRINSIC
ZnF_C2H2	791	814	1.62e0	SMART
low complexity region	832	846	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000176947
AA Change: N104S

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)

Predicted Effect

probably null
Transcript: ENSMUST00000176691
AA Change: N51S

PolyPhen 2 Score 0.896 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000135375
Gene: ENSMUSG00000028487
AA Change: N51S

Domain	Start	End	E-Value	Type
low complexity region	267	283	N/A	INTRINSIC
low complexity region	294	305	N/A	INTRINSIC
ZnF_C2H2	374	397	4.72e-2	SMART
ZnF_C2H2	402	431	7.11e0	SMART
low complexity region	517	534	N/A	INTRINSIC
low complexity region	538	547	N/A	INTRINSIC
low complexity region	581	595	N/A	INTRINSIC
ZnF_C2H2	766	789	1.62e0	SMART
ZnF_C2H2	794	821	4.81e0	SMART
low complexity region	896	913	N/A	INTRINSIC
low complexity region	953	967	N/A	INTRINSIC
ZnF_C2H2	968	991	1.03e-2	SMART
ZnF_C2H2	996	1023	3.78e-1	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000177040
AA Change: N36S

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000176476

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000177256

Coding Region Coverage

1x: 99.3%
3x: 98.5%
10x: 96.8%
20x: 94.4%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a conserved zinc finger protein. The encoded protein functions in skin color saturation. Mutations in this gene are associated with facial pigmented spots. This gene is also associated with susceptibility to adolescent idiopathic scoliosis. [provided by RefSeq, Jul 2016]
PHENOTYPE: Mice homozygous for a gene trap insertion die within 24 hrs of birth and display cleft palate, an overall size reduction of the head and tongue, and abnormal craniofacial bone development due to impaired multiplication of embryonic craniofacial mesenchymal cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Akt2	A	G	7: 27,637,158	T401A	probably damaging	Het
Arhgap32	G	T	9: 32,116,202	V23L	probably benign	Het
Atmin	T	A	8: 116,954,840	C193S	possibly damaging	Het
Atp13a5	C	T	16: 29,333,974	V225I	probably benign	Het
Auh	G	A	13: 52,835,496	P308L	probably benign	Het
BC024139	A	G	15: 76,124,326	V350A	possibly damaging	Het
Birc6	G	T	17: 74,528,636	E29*	probably null	Het
C030048H21Rik	T	C	2: 26,257,503		probably null	Het
Cd320	G	T	17: 33,847,639	C117F	probably damaging	Het
Cdkal1	A	G	13: 29,326,150	S542P	probably damaging	Het
Crocc	T	C	4: 141,019,737	T1587A	probably benign	Het
Defb41	T	C	1: 18,260,593		probably null	Het
Dmtf1	A	G	5: 9,140,384		probably null	Het
Dnhd1	A	G	7: 105,704,148	N2836S	probably benign	Het
Dpp8	G	A	9: 65,078,748	S840N	probably benign	Het
Dsc2	A	G	18: 20,034,701	F111L	probably damaging	Het
Dsc2	T	A	18: 20,045,565	I261F	probably benign	Het
Ece1	T	C	4: 137,951,508	V509A	probably benign	Het
Ecm2	T	C	13: 49,518,332	M103T	possibly damaging	Het
Emsy	T	C	7: 98,590,856	H1064R	probably damaging	Het
Engase	T	C	11: 118,487,140	V252A	possibly damaging	Het
F13b	A	G	1: 139,510,965	Y369C	probably damaging	Het
Flii	T	C	11: 60,721,606		probably null	Het
Fzd10	T	A	5: 128,602,559	F448I	probably damaging	Het
Gpr35	T	G	1: 92,983,048	F161V	probably damaging	Het
Gprin2	T	C	14: 34,195,273	D180G	possibly damaging	Het
Grik3	A	G	4: 125,670,728	N501S	probably benign	Het
Hells	A	G	19: 38,967,765	K802E	probably damaging	Het
Il1r1	T	A	1: 40,293,349	C96*	probably null	Het
Kcnk16	T	A	14: 20,265,277	I73F	probably damaging	Het
Kcnq5	A	G	1: 21,402,681	S652P	probably benign	Het
Lamc3	A	G	2: 31,940,751	D1500G	probably damaging	Het
Macf1	A	G	4: 123,378,480	F6468L	probably damaging	Het
Mgrn1	T	A	16: 4,915,780	F198I	probably benign	Het
Mmp3	A	G	9: 7,451,232	T323A	probably benign	Het
N4bp2	A	G	5: 65,790,498	Y157C	probably benign	Het
Nfkbid	C	A	7: 30,425,356	H190Q	probably benign	Het
Olfr1474	T	C	19: 13,471,680	S237P	probably damaging	Het
Olfr512	T	C	7: 108,713,941	V184A	possibly damaging	Het
Olfr790	T	C	10: 129,501,591	S236P	probably damaging	Het
Osgin2	C	T	4: 15,998,380	G414D	probably benign	Het
Pkd1	G	A	17: 24,594,853	R4097H	probably benign	Het
Pnkd	T	A	1: 74,349,809	L213Q	probably null	Het
Ppfibp1	A	G	6: 147,027,432	H850R	probably benign	Het
Ppp6r1	T	C	7: 4,643,258	D148G	probably damaging	Het
Ptprt	A	T	2: 162,238,034	S282T	probably damaging	Het
Sgsm3	T	C	15: 81,010,256	V536A	probably benign	Het
Slc22a23	T	A	13: 34,203,964	Q383L	probably benign	Het
Snx29	T	C	16: 11,399,837		probably null	Het
Tmem229b-ps	T	A	10: 53,475,446		noncoding transcript	Het
Tmod4	A	T	3: 95,128,679	Y317F	possibly damaging	Het
Trim13	T	C	14: 61,605,659	M375T	probably benign	Het
Txndc11	A	G	16: 11,075,062	S935P	probably damaging	Het
Umod	T	C	7: 119,465,497	N592D	probably benign	Het
Vmn2r118	A	G	17: 55,610,643	Y290H	probably benign	Het
Vps26b	A	G	9: 27,012,745	M234T	probably damaging	Het
Zbtb48	A	G	4: 152,020,201		probably null	Het
Zfc3h1	T	A	10: 115,416,742	F1320Y	probably benign	Het
Zfp784	A	T	7: 5,036,040		probably benign	Het

Other mutations in Bnc2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01593:Bnc2	APN	4	84276241	splice site	probably null
IGL01902:Bnc2	APN	4	84390944	missense	probably damaging	1.00
IGL02228:Bnc2	APN	4	84293076	missense	possibly damaging	0.70
IGL02396:Bnc2	APN	4	84276009	missense	probably benign	0.16
R0125:Bnc2	UTSW	4	84292932	missense	probably damaging	1.00
R0650:Bnc2	UTSW	4	84293196	missense	probably benign	0.04
R1082:Bnc2	UTSW	4	84546335	missense	probably damaging	1.00
R1334:Bnc2	UTSW	4	84276289	missense	possibly damaging	0.49
R1439:Bnc2	UTSW	4	84276068	missense	probably benign	0.38
R1447:Bnc2	UTSW	4	84293220	missense	probably benign	0.13
R1548:Bnc2	UTSW	4	84275957	missense	probably damaging	1.00
R1818:Bnc2	UTSW	4	84291874	missense	possibly damaging	0.70
R1819:Bnc2	UTSW	4	84291874	missense	possibly damaging	0.70
R2345:Bnc2	UTSW	4	84292503	missense	probably damaging	1.00
R2897:Bnc2	UTSW	4	84292915	missense	probably damaging	1.00
R2898:Bnc2	UTSW	4	84292915	missense	probably damaging	1.00
R2966:Bnc2	UTSW	4	84293517	missense	probably benign	0.14
R3404:Bnc2	UTSW	4	84546241	missense	probably damaging	0.98
R4235:Bnc2	UTSW	4	84293514	missense	probably damaging	0.96
R4546:Bnc2	UTSW	4	84291976	missense	probably benign	0.34
R4676:Bnc2	UTSW	4	84292819	missense	probably damaging	1.00
R4926:Bnc2	UTSW	4	84276179	missense	probably damaging	1.00
R5060:Bnc2	UTSW	4	84531635	missense	probably benign	0.02
R5365:Bnc2	UTSW	4	84411429	intron	probably benign
R5735:Bnc2	UTSW	4	84292671	missense	probably damaging	1.00
R5872:Bnc2	UTSW	4	84292770	missense	possibly damaging	0.86
R5921:Bnc2	UTSW	4	84293055	missense	possibly damaging	0.95
R5999:Bnc2	UTSW	4	84555900	missense	probably benign	0.20
R6351:Bnc2	UTSW	4	84293143	missense	probably benign	0.16
R6869:Bnc2	UTSW	4	84293496	missense	probably damaging	1.00
R7236:Bnc2	UTSW	4	84555864	missense	probably benign	0.31
R7363:Bnc2	UTSW	4	84292071	missense	probably benign	0.02
R7643:Bnc2	UTSW	4	84506574	missense	probably benign	0.01
R8017:Bnc2	UTSW	4	84411425	missense
R8019:Bnc2	UTSW	4	84411425	missense
R8050:Bnc2	UTSW	4	84292336	missense	probably benign	0.00
R8311:Bnc2	UTSW	4	84276345	missense	possibly damaging	0.69
R8463:Bnc2	UTSW	4	84293371	missense	probably damaging	0.99
R8676:Bnc2	UTSW	4	84276313	missense	possibly damaging	0.65
R8722:Bnc2	UTSW	4	84293646	missense	possibly damaging	0.92
R8845:Bnc2	UTSW	4	84276101	missense	possibly damaging	0.81
R8887:Bnc2	UTSW	4	84291470	intron	probably benign
R9051:Bnc2	UTSW	4	84291901	missense	probably benign	0.00
R9142:Bnc2	UTSW	4	84555874	missense	probably benign	0.03
R9165:Bnc2	UTSW	4	84411494	missense
R9297:Bnc2	UTSW	4	84555899	intron	probably benign
R9638:Bnc2	UTSW	4	84414255	missense	probably damaging	1.00
X0021:Bnc2	UTSW	4	84293140	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TACTTGTAGCACCGATGACCGCTC -3'
(R):5'- GGTGATCCAGTGTCCTCTGGAAAAC -3'

Sequencing Primer
(F):5'- ctctctccctctctctgtctc -3'
(R):5'- GTACTCCCTTTGCGTTTAAAGAC -3'

Posted On

2014-04-13