Incidental Mutation 'R1511:R3hdm1'
ID 168264
Institutional Source Beutler Lab
Gene Symbol R3hdm1
Ensembl Gene ENSMUSG00000056211
Gene Name R3H domain containing 1
Synonyms
MMRRC Submission 039558-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R1511 (G1)
Quality Score 225
Status Not validated
Chromosome 1
Chromosomal Location 128031038-128165473 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 128124742 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Cysteine at position 343 (Y343C)
Ref Sequence ENSEMBL: ENSMUSP00000140209 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000036288] [ENSMUST00000190056]
AlphaFold E9Q9Q2
Predicted Effect probably damaging
Transcript: ENSMUST00000036288
AA Change: Y686C

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)
SMART Domains Protein: ENSMUSP00000043103
Gene: ENSMUSG00000056211
AA Change: Y686C

DomainStartEndE-ValueType
coiled coil region 9 31 N/A INTRINSIC
low complexity region 68 82 N/A INTRINSIC
low complexity region 86 99 N/A INTRINSIC
R3H 151 228 3.18e-22 SMART
Pfam:SUZ 249 302 8.8e-15 PFAM
low complexity region 391 424 N/A INTRINSIC
low complexity region 511 534 N/A INTRINSIC
low complexity region 624 642 N/A INTRINSIC
low complexity region 909 927 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000185853
Predicted Effect noncoding transcript
Transcript: ENSMUST00000189982
Predicted Effect probably damaging
Transcript: ENSMUST00000190056
AA Change: Y343C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000140209
Gene: ENSMUSG00000056211
AA Change: Y343C

DomainStartEndE-ValueType
low complexity region 82 115 N/A INTRINSIC
low complexity region 202 225 N/A INTRINSIC
low complexity region 281 299 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.0%
  • 10x: 95.4%
  • 20x: 89.7%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 105 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aacs C A 5: 125,592,041 (GRCm39) N576K probably benign Het
Abca5 G T 11: 110,190,804 (GRCm39) L769M probably damaging Het
Abca5 T A 11: 110,190,812 (GRCm39) H766L possibly damaging Het
Acvr1c A G 2: 58,177,896 (GRCm39) I191T probably damaging Het
Agps A T 2: 75,697,123 (GRCm39) E314D probably damaging Het
Agxt G A 1: 93,063,490 (GRCm39) G131R probably damaging Het
Ak8 A G 2: 28,632,758 (GRCm39) T326A probably benign Het
Aldoart2 T A 12: 55,613,062 (GRCm39) I329N probably benign Het
Apaf1 T C 10: 90,896,047 (GRCm39) I342V possibly damaging Het
Arhgap40 T C 2: 158,369,081 (GRCm39) S68P probably benign Het
Arsi G A 18: 61,049,723 (GRCm39) G202E probably benign Het
AU022252 C T 4: 119,085,294 (GRCm39) R71Q possibly damaging Het
Baz1b T C 5: 135,246,636 (GRCm39) L695P probably damaging Het
Baz2b A T 2: 59,792,368 (GRCm39) S587T probably benign Het
Cep76 T C 18: 67,758,028 (GRCm39) M421V probably benign Het
Clk2 A G 3: 89,076,010 (GRCm39) D60G probably damaging Het
Clstn3 G T 6: 124,439,128 (GRCm39) T6K probably damaging Het
Cluap1 T A 16: 3,737,422 (GRCm39) D180E probably benign Het
Col12a1 T C 9: 79,606,834 (GRCm39) I530V probably benign Het
Cpt1a T C 19: 3,415,788 (GRCm39) probably benign Het
Cr2 T G 1: 194,837,580 (GRCm39) K797Q possibly damaging Het
Crybg3 C A 16: 59,374,475 (GRCm39) V2260L probably benign Het
Csnk1a1 T A 18: 61,718,321 (GRCm39) probably benign Het
Cxcr1 T C 1: 74,231,929 (GRCm39) D31G probably benign Het
Cyp2a5 G T 7: 26,535,361 (GRCm39) D108Y probably damaging Het
Dnajc1 A G 2: 18,227,538 (GRCm39) V376A possibly damaging Het
Eif4enif1 T C 11: 3,186,278 (GRCm39) V462A probably benign Het
Elmo1 A G 13: 20,474,647 (GRCm39) K357R possibly damaging Het
Eml6 T A 11: 29,768,374 (GRCm39) H771L probably damaging Het
Epb41l4a A G 18: 33,965,717 (GRCm39) I370T probably benign Het
Esp36 A T 17: 38,728,172 (GRCm39) N79K possibly damaging Het
Fam229b A G 10: 38,994,915 (GRCm39) *81Q probably null Het
Fat4 T C 3: 39,037,225 (GRCm39) Y3626H probably damaging Het
Fbn1 A T 2: 125,148,205 (GRCm39) F2681Y probably benign Het
Gad1-ps A G 10: 99,281,331 (GRCm39) noncoding transcript Het
Galm C A 17: 80,490,696 (GRCm39) N284K probably damaging Het
Gtf3c2 A T 5: 31,316,446 (GRCm39) S735T probably benign Het
Hsph1 A T 5: 149,553,848 (GRCm39) S207T probably benign Het
Il33 C T 19: 29,932,615 (GRCm39) R159C probably damaging Het
Invs A G 4: 48,382,148 (GRCm39) N106S possibly damaging Het
Kif21b G T 1: 136,097,062 (GRCm39) probably null Het
Kirrel2 A G 7: 30,155,923 (GRCm39) C42R probably damaging Het
Letm1 A C 5: 33,909,899 (GRCm39) C378W probably damaging Het
Lrrc71 T A 3: 87,652,791 (GRCm39) K160N probably benign Het
Lrrtm3 A G 10: 63,924,804 (GRCm39) I121T probably damaging Het
Lztr1 T A 16: 17,327,534 (GRCm39) V79E probably damaging Het
Mmp8 T G 9: 7,566,279 (GRCm39) D378E probably damaging Het
Mpzl3 A G 9: 44,977,827 (GRCm39) E145G probably damaging Het
Mrps2 C T 2: 28,359,676 (GRCm39) L178F probably damaging Het
Mzb1 A G 18: 35,780,875 (GRCm39) probably null Het
Nckap1 T C 2: 80,383,759 (GRCm39) D135G probably damaging Het
Ndst1 A G 18: 60,830,242 (GRCm39) F623L possibly damaging Het
Nlrp5 A T 7: 23,112,772 (GRCm39) D143V probably damaging Het
Or14a260 T C 7: 85,985,553 (GRCm39) D17G possibly damaging Het
Or4a69 T C 2: 89,312,592 (GRCm39) M296V probably null Het
Or4b1d A G 2: 89,968,748 (GRCm39) V245A probably benign Het
Or4c120 A G 2: 89,001,281 (GRCm39) S92P probably damaging Het
Or4f58 A G 2: 111,851,749 (GRCm39) V150A probably benign Het
Or52b4i T C 7: 102,191,332 (GRCm39) L63P probably damaging Het
Or8b44 A G 9: 38,410,114 (GRCm39) I50V probably benign Het
Or8g17 T C 9: 38,930,321 (GRCm39) D172G probably benign Het
Parp14 T G 16: 35,677,594 (GRCm39) E791D probably benign Het
Pcdh8 C T 14: 80,006,829 (GRCm39) R578H possibly damaging Het
Phrf1 T A 7: 140,839,714 (GRCm39) probably benign Het
Polr3b C A 10: 84,516,249 (GRCm39) H626N probably benign Het
Ppp1r12a A G 10: 108,087,720 (GRCm39) T58A probably benign Het
Ppp4r3b T A 11: 29,132,460 (GRCm39) V33D probably damaging Het
Ppp5c A G 7: 16,743,907 (GRCm39) Y176H probably damaging Het
Rabac1 C T 7: 24,671,555 (GRCm39) V122M probably damaging Het
Rasef G T 4: 73,653,985 (GRCm39) Q561K probably damaging Het
Rbl1 A G 2: 157,037,554 (GRCm39) S198P probably damaging Het
Rbm12 A T 2: 155,939,456 (GRCm39) M272K probably damaging Het
Rexo1 T G 10: 80,385,884 (GRCm39) K391N possibly damaging Het
Rnf43 T C 11: 87,622,173 (GRCm39) S384P probably benign Het
Rpsa A T 9: 119,960,066 (GRCm39) I210F possibly damaging Het
Rslcan18 A G 13: 67,247,016 (GRCm39) Y75H possibly damaging Het
Scn9a T A 2: 66,357,157 (GRCm39) D1048V probably benign Het
Sec11a T C 7: 80,577,482 (GRCm39) probably null Het
Sidt2 A G 9: 45,861,387 (GRCm39) V19A probably damaging Het
Snx14 G A 9: 88,280,417 (GRCm39) Q522* probably null Het
Stx1b A G 7: 127,414,144 (GRCm39) L74S probably damaging Het
Tm7sf3 A T 6: 146,511,376 (GRCm39) M371K probably benign Het
Tmem115 T C 9: 107,412,174 (GRCm39) V166A probably benign Het
Traf5 T A 1: 191,731,912 (GRCm39) T310S probably benign Het
Trdn A G 10: 33,342,448 (GRCm39) K619E probably benign Het
Trmt10a T A 3: 137,857,945 (GRCm39) probably null Het
Txk A C 5: 72,865,014 (GRCm39) I287R probably damaging Het
Txndc16 T C 14: 45,389,344 (GRCm39) D452G probably damaging Het
Ube2f G A 1: 91,190,023 (GRCm39) probably null Het
Ubtfl1 T G 9: 18,321,489 (GRCm39) I339R probably benign Het
Upf1 A G 8: 70,791,155 (GRCm39) I529T probably damaging Het
Vmn1r197 A G 13: 22,512,823 (GRCm39) D248G possibly damaging Het
Vmn1r5 A T 6: 56,962,771 (GRCm39) T149S probably benign Het
Vmn1r83 C T 7: 12,055,197 (GRCm39) V287I possibly damaging Het
Vmn2r118 G A 17: 55,915,496 (GRCm39) R485* probably null Het
Vmn2r130 A G 17: 23,282,775 (GRCm39) T152A probably benign Het
Vps13b T C 15: 35,840,121 (GRCm39) F2448L probably damaging Het
Vps13b A G 15: 35,841,719 (GRCm39) N2583S probably benign Het
Wscd1 C T 11: 71,679,501 (GRCm39) P458L probably damaging Het
Xylt2 T A 11: 94,561,259 (GRCm39) D168V probably damaging Het
Zdhhc2 A G 8: 40,921,013 (GRCm39) T306A probably benign Het
Zfp804b A T 5: 6,819,771 (GRCm39) D1097E possibly damaging Het
Zfp93 T A 7: 23,975,156 (GRCm39) C380* probably null Het
Zfp960 T A 17: 17,308,518 (GRCm39) C411S probably damaging Het
Zmynd15 T A 11: 70,355,619 (GRCm39) V430E probably damaging Het
Other mutations in R3hdm1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00757:R3hdm1 APN 1 128,164,176 (GRCm39) missense probably damaging 1.00
IGL00799:R3hdm1 APN 1 128,102,700 (GRCm39) missense probably damaging 1.00
IGL00835:R3hdm1 APN 1 128,163,369 (GRCm39) splice site probably benign
IGL00885:R3hdm1 APN 1 128,164,175 (GRCm39) missense probably damaging 0.99
IGL00990:R3hdm1 APN 1 128,089,933 (GRCm39) intron probably benign
IGL01137:R3hdm1 APN 1 128,109,612 (GRCm39) missense probably damaging 1.00
IGL01323:R3hdm1 APN 1 128,144,280 (GRCm39) missense probably benign
IGL01461:R3hdm1 APN 1 128,106,643 (GRCm39) missense probably damaging 1.00
IGL01565:R3hdm1 APN 1 128,114,553 (GRCm39) missense probably damaging 1.00
IGL01813:R3hdm1 APN 1 128,102,970 (GRCm39) critical splice donor site probably null
IGL01837:R3hdm1 APN 1 128,114,497 (GRCm39) nonsense probably null
IGL01934:R3hdm1 APN 1 128,164,272 (GRCm39) missense probably benign 0.12
IGL02074:R3hdm1 APN 1 128,096,775 (GRCm39) missense possibly damaging 0.48
IGL02532:R3hdm1 APN 1 128,124,836 (GRCm39) critical splice donor site probably null
IGL02606:R3hdm1 APN 1 128,118,456 (GRCm39) missense probably benign 0.00
IGL02851:R3hdm1 APN 1 128,102,677 (GRCm39) splice site probably benign
driven UTSW 1 128,121,302 (GRCm39) missense probably benign 0.00
R0023:R3hdm1 UTSW 1 128,138,929 (GRCm39) splice site probably benign
R0280:R3hdm1 UTSW 1 128,090,512 (GRCm39) missense probably benign 0.00
R0482:R3hdm1 UTSW 1 128,112,254 (GRCm39) missense probably benign 0.12
R0521:R3hdm1 UTSW 1 128,121,440 (GRCm39) missense probably benign 0.07
R0578:R3hdm1 UTSW 1 128,159,174 (GRCm39) nonsense probably null
R0698:R3hdm1 UTSW 1 128,109,476 (GRCm39) missense probably damaging 1.00
R0701:R3hdm1 UTSW 1 128,109,476 (GRCm39) missense probably damaging 1.00
R0961:R3hdm1 UTSW 1 128,121,333 (GRCm39) missense probably benign 0.13
R1026:R3hdm1 UTSW 1 128,124,742 (GRCm39) missense probably damaging 1.00
R1141:R3hdm1 UTSW 1 128,159,142 (GRCm39) missense probably benign 0.01
R1319:R3hdm1 UTSW 1 128,159,142 (GRCm39) missense probably benign 0.01
R1320:R3hdm1 UTSW 1 128,159,142 (GRCm39) missense probably benign 0.01
R1705:R3hdm1 UTSW 1 128,162,821 (GRCm39) missense probably damaging 1.00
R1991:R3hdm1 UTSW 1 128,096,753 (GRCm39) missense probably damaging 0.99
R2140:R3hdm1 UTSW 1 128,118,430 (GRCm39) missense probably damaging 0.99
R2437:R3hdm1 UTSW 1 128,114,573 (GRCm39) missense probably damaging 0.98
R2447:R3hdm1 UTSW 1 128,114,666 (GRCm39) intron probably benign
R4564:R3hdm1 UTSW 1 128,149,396 (GRCm39) missense probably benign 0.16
R4640:R3hdm1 UTSW 1 128,102,975 (GRCm39) splice site probably benign
R4649:R3hdm1 UTSW 1 128,112,181 (GRCm39) missense probably damaging 1.00
R4650:R3hdm1 UTSW 1 128,112,181 (GRCm39) missense probably damaging 1.00
R4652:R3hdm1 UTSW 1 128,112,181 (GRCm39) missense probably damaging 1.00
R4653:R3hdm1 UTSW 1 128,112,181 (GRCm39) missense probably damaging 1.00
R4696:R3hdm1 UTSW 1 128,164,503 (GRCm39) utr 3 prime probably benign
R5393:R3hdm1 UTSW 1 128,159,084 (GRCm39) missense probably benign
R5554:R3hdm1 UTSW 1 128,164,409 (GRCm39) missense probably benign 0.27
R5979:R3hdm1 UTSW 1 128,138,960 (GRCm39) missense probably benign 0.04
R6123:R3hdm1 UTSW 1 128,096,773 (GRCm39) missense probably damaging 0.99
R6185:R3hdm1 UTSW 1 128,079,598 (GRCm39) missense possibly damaging 0.93
R6618:R3hdm1 UTSW 1 128,121,302 (GRCm39) missense probably benign 0.00
R6636:R3hdm1 UTSW 1 128,090,548 (GRCm39) frame shift probably null
R6639:R3hdm1 UTSW 1 128,090,548 (GRCm39) frame shift probably null
R6756:R3hdm1 UTSW 1 128,090,548 (GRCm39) frame shift probably null
R7168:R3hdm1 UTSW 1 128,144,232 (GRCm39) missense probably benign 0.05
R7210:R3hdm1 UTSW 1 128,138,945 (GRCm39) missense possibly damaging 0.95
R7367:R3hdm1 UTSW 1 128,081,129 (GRCm39) missense possibly damaging 0.64
R7536:R3hdm1 UTSW 1 128,109,948 (GRCm39) splice site probably null
R7896:R3hdm1 UTSW 1 128,096,703 (GRCm39) splice site probably null
R8391:R3hdm1 UTSW 1 128,121,215 (GRCm39) missense
R8486:R3hdm1 UTSW 1 128,106,657 (GRCm39) missense probably benign 0.11
R8490:R3hdm1 UTSW 1 128,162,864 (GRCm39) missense probably benign 0.26
R8947:R3hdm1 UTSW 1 128,102,694 (GRCm39) missense possibly damaging 0.60
R8990:R3hdm1 UTSW 1 128,106,833 (GRCm39) missense probably damaging 1.00
R9141:R3hdm1 UTSW 1 128,164,212 (GRCm39) missense probably damaging 1.00
R9195:R3hdm1 UTSW 1 128,089,975 (GRCm39) missense probably benign 0.28
R9426:R3hdm1 UTSW 1 128,164,212 (GRCm39) missense probably damaging 1.00
R9469:R3hdm1 UTSW 1 128,106,921 (GRCm39) critical splice donor site probably null
X0017:R3hdm1 UTSW 1 128,095,658 (GRCm39) missense possibly damaging 0.92
X0020:R3hdm1 UTSW 1 128,096,770 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AGCACAGTGGTAAATGTCTTTTGCTCT -3'
(R):5'- GCAGAACCTTCATGTTATGCCCTCA -3'

Sequencing Primer
(F):5'- ccccttgcctctgtgtc -3'
(R):5'- ctctctctctctctctctctctc -3'
Posted On 2014-04-13