Incidental Mutation 'R1495:Kmt2e'
ID 168772
Institutional Source Beutler Lab
Gene Symbol Kmt2e
Ensembl Gene ENSMUSG00000029004
Gene Name lysine (K)-specific methyltransferase 2E
Synonyms D230038D11Rik, 9530077A04Rik, 1810033J14Rik, Mll5
MMRRC Submission 039546-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R1495 (G1)
Quality Score 225
Status Not validated
Chromosome 5
Chromosomal Location 23434441-23504235 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) A to G at 23499327 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Serine to Glycine at position 1173 (S1173G)
Ref Sequence ENSEMBL: ENSMUSP00000110781 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000088392] [ENSMUST00000094962] [ENSMUST00000115128] [ENSMUST00000126586] [ENSMUST00000146375] [ENSMUST00000196260]
AlphaFold Q3UG20
Predicted Effect probably benign
Transcript: ENSMUST00000088392
SMART Domains Protein: ENSMUSP00000085734
Gene: ENSMUSG00000062604

DomainStartEndE-ValueType
low complexity region 5 46 N/A INTRINSIC
Pfam:Pkinase 79 228 1.3e-22 PFAM
Pfam:Pkinase_Tyr 79 228 1e-9 PFAM
coiled coil region 263 314 N/A INTRINSIC
coiled coil region 339 373 N/A INTRINSIC
low complexity region 393 406 N/A INTRINSIC
Pfam:Pkinase 506 680 1.9e-18 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000094962
AA Change: S1173G

PolyPhen 2 Score 0.835 (Sensitivity: 0.84; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000092569
Gene: ENSMUSG00000029004
AA Change: S1173G

DomainStartEndE-ValueType
low complexity region 23 38 N/A INTRINSIC
low complexity region 48 55 N/A INTRINSIC
low complexity region 70 81 N/A INTRINSIC
low complexity region 100 109 N/A INTRINSIC
PHD 120 164 4.25e-8 SMART
SET 328 453 2.13e-26 SMART
low complexity region 487 503 N/A INTRINSIC
low complexity region 569 582 N/A INTRINSIC
low complexity region 854 867 N/A INTRINSIC
low complexity region 882 908 N/A INTRINSIC
low complexity region 933 945 N/A INTRINSIC
low complexity region 951 960 N/A INTRINSIC
low complexity region 1184 1197 N/A INTRINSIC
low complexity region 1214 1237 N/A INTRINSIC
low complexity region 1294 1312 N/A INTRINSIC
low complexity region 1348 1367 N/A INTRINSIC
internal_repeat_1 1434 1496 6.13e-7 PROSPERO
low complexity region 1506 1518 N/A INTRINSIC
low complexity region 1625 1641 N/A INTRINSIC
low complexity region 1677 1705 N/A INTRINSIC
low complexity region 1720 1731 N/A INTRINSIC
internal_repeat_1 1783 1842 6.13e-7 PROSPERO
Predicted Effect possibly damaging
Transcript: ENSMUST00000115128
AA Change: S1173G

PolyPhen 2 Score 0.835 (Sensitivity: 0.84; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000110781
Gene: ENSMUSG00000029004
AA Change: S1173G

DomainStartEndE-ValueType
low complexity region 23 38 N/A INTRINSIC
low complexity region 48 55 N/A INTRINSIC
low complexity region 70 81 N/A INTRINSIC
low complexity region 100 109 N/A INTRINSIC
PHD 120 164 4.25e-8 SMART
SET 328 453 2.13e-26 SMART
low complexity region 487 503 N/A INTRINSIC
low complexity region 569 582 N/A INTRINSIC
low complexity region 854 867 N/A INTRINSIC
low complexity region 882 908 N/A INTRINSIC
low complexity region 933 945 N/A INTRINSIC
low complexity region 951 960 N/A INTRINSIC
low complexity region 1184 1197 N/A INTRINSIC
low complexity region 1214 1237 N/A INTRINSIC
low complexity region 1294 1312 N/A INTRINSIC
low complexity region 1348 1367 N/A INTRINSIC
internal_repeat_1 1434 1496 6.13e-7 PROSPERO
low complexity region 1506 1518 N/A INTRINSIC
low complexity region 1625 1641 N/A INTRINSIC
low complexity region 1677 1705 N/A INTRINSIC
low complexity region 1720 1731 N/A INTRINSIC
internal_repeat_1 1783 1842 6.13e-7 PROSPERO
Predicted Effect probably benign
Transcript: ENSMUST00000126586
Predicted Effect probably benign
Transcript: ENSMUST00000146375
SMART Domains Protein: ENSMUSP00000142547
Gene: ENSMUSG00000029004

DomainStartEndE-ValueType
low complexity region 104 117 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000194010
Predicted Effect probably benign
Transcript: ENSMUST00000196260
SMART Domains Protein: ENSMUSP00000143791
Gene: ENSMUSG00000029004

DomainStartEndE-ValueType
low complexity region 49 62 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000197591
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.3%
  • 10x: 96.5%
  • 20x: 93.3%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the myeloid/lymphoid or mixed-lineage leukemia (MLL) family and encodes a protein with an N-terminal PHD zinc finger and a central SET domain. Overexpression of the protein inhibits cell cycle progression. Alternate transcriptional splice variants have been characterized. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a null allele exhibit neonatal and postnatal lethality, reduced fertility and growth, and abnormal lymphopoiesis. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 66 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4833420G17Rik A G 13: 119,477,820 (GRCm38) N488S probably benign Het
Acot10 G A 15: 20,665,507 (GRCm38) R383C probably damaging Het
Acsm2 A G 7: 119,578,126 (GRCm38) D263G probably damaging Het
Adcy2 G T 13: 68,796,535 (GRCm38) Q243K probably benign Het
Aggf1 G A 13: 95,356,413 (GRCm38) R563* probably null Het
Agt A G 8: 124,559,455 (GRCm38) F296S probably damaging Het
Akap14 T C X: 37,163,965 (GRCm38) D39G possibly damaging Het
Akt3 T C 1: 177,103,042 (GRCm38) M117V probably benign Het
Ankar T C 1: 72,643,291 (GRCm38) T1154A probably benign Het
Arvcf T A 16: 18,389,386 (GRCm38) L70Q probably damaging Het
Ccdc171 A T 4: 83,681,095 (GRCm38) K724* probably null Het
Ccdc91 A G 6: 147,534,172 (GRCm38) T85A possibly damaging Het
Ccdc9b T G 2: 118,760,532 (GRCm38) K173N probably damaging Het
Cdh3 C T 8: 106,538,997 (GRCm38) T224I probably damaging Het
Clstn3 T C 6: 124,449,917 (GRCm38) I482V probably benign Het
Cnot9 A G 1: 74,523,600 (GRCm38) E176G probably damaging Het
Cntnap4 T G 8: 112,881,763 (GRCm38) L1272V possibly damaging Het
Cyb5a T A 18: 84,851,480 (GRCm38) M1K probably null Het
Cyp2c23 A G 19: 44,005,508 (GRCm38) I473T probably benign Het
Dbil5 T A 11: 76,218,450 (GRCm38) M60K probably benign Het
Defa38 T A 8: 21,095,201 (GRCm38) Q75L probably benign Het
Dgkg A T 16: 22,500,379 (GRCm38) L644Q probably damaging Het
Disp3 T C 4: 148,249,825 (GRCm38) I1004V probably benign Het
Egf T A 3: 129,713,006 (GRCm38) I599F probably damaging Het
Epc2 A G 2: 49,536,663 (GRCm38) T145A probably damaging Het
Extl1 TGCGTTGCACCGATACCGGG TG 4: 134,357,677 (GRCm38) probably benign Het
Extl3 A T 14: 65,075,867 (GRCm38) V622E probably benign Het
Fam227a C T 15: 79,626,245 (GRCm38) V403I probably benign Het
Fat2 T A 11: 55,262,673 (GRCm38) D3571V probably benign Het
Fcho2 A G 13: 98,749,850 (GRCm38) probably null Het
Fras1 A G 5: 96,528,586 (GRCm38) N64S possibly damaging Het
Gabbr1 A G 17: 37,055,940 (GRCm38) N352S possibly damaging Het
Gabra1 T C 11: 42,154,944 (GRCm38) N113S probably damaging Het
Glg1 T C 8: 111,197,675 (GRCm38) Y227C probably damaging Het
Gm5141 A T 13: 62,774,270 (GRCm38) C362S probably damaging Het
Gprc6a T A 10: 51,628,437 (GRCm38) T104S probably benign Het
Jph1 A C 1: 17,091,652 (GRCm38) V262G probably benign Het
Kank1 C G 19: 25,410,349 (GRCm38) T434R probably damaging Het
Krt75 G A 15: 101,573,873 (GRCm38) probably benign Het
Lyzl1 G T 18: 4,181,192 (GRCm38) W77L probably null Het
Nipbl T G 15: 8,351,280 (GRCm38) N676T probably benign Het
Obscn C T 11: 59,080,160 (GRCm38) S2300N probably damaging Het
Or9a2 T G 6: 41,771,903 (GRCm38) Y132S probably damaging Het
Osbpl1a T A 18: 12,758,839 (GRCm38) M350L probably benign Het
Pecam1 T C 11: 106,688,856 (GRCm38) D460G probably damaging Het
Pik3c2a T A 7: 116,388,065 (GRCm38) K540N probably benign Het
Prdm12 T A 2: 31,640,193 (GRCm38) I32N probably damaging Het
Prkd1 T C 12: 50,366,352 (GRCm38) S679G probably damaging Het
Psen2 C T 1: 180,228,854 (GRCm38) A393T probably damaging Het
Ptprh T A 7: 4,580,889 (GRCm38) T235S probably benign Het
Ranbp3 C T 17: 56,705,527 (GRCm38) P182L probably benign Het
Serpinb7 A T 1: 107,451,660 (GRCm38) K266* probably null Het
Sesn3 T C 9: 14,308,521 (GRCm38) S69P probably damaging Het
Slc12a6 T C 2: 112,354,190 (GRCm38) M818T probably damaging Het
Slc25a53 C A X: 137,015,335 (GRCm38) C4F unknown Het
Snx1 T A 9: 66,096,597 (GRCm38) L255F probably benign Het
Sptbn2 T G 19: 4,718,976 (GRCm38) S46A possibly damaging Het
Taf4 A G 2: 179,933,027 (GRCm38) F595S probably damaging Het
Tec A T 5: 72,786,755 (GRCm38) V103E probably damaging Het
Tmco5b T C 2: 113,290,791 (GRCm38) S147P possibly damaging Het
Uchl5 C T 1: 143,799,937 (GRCm38) T93I possibly damaging Het
Usp14 A T 18: 10,004,994 (GRCm38) S225T probably benign Het
Usp45 C A 4: 21,797,385 (GRCm38) Q238K possibly damaging Het
Vmn1r6 T A 6: 57,003,073 (GRCm38) M218K possibly damaging Het
Zfp84 T A 7: 29,777,303 (GRCm38) Y473* probably null Het
Zyg11b G A 4: 108,266,213 (GRCm38) P186S probably damaging Het
Other mutations in Kmt2e
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00783:Kmt2e APN 5 23,492,358 (GRCm38) missense probably damaging 0.99
IGL01330:Kmt2e APN 5 23,497,948 (GRCm38) missense possibly damaging 0.95
IGL01457:Kmt2e APN 5 23,502,019 (GRCm38) missense possibly damaging 0.62
IGL01691:Kmt2e APN 5 23,497,091 (GRCm38) missense probably benign
IGL02274:Kmt2e APN 5 23,500,760 (GRCm38) missense probably benign 0.00
IGL02934:Kmt2e APN 5 23,497,884 (GRCm38) missense probably damaging 0.97
IGL02964:Kmt2e APN 5 23,467,100 (GRCm38) splice site probably benign
IGL03011:Kmt2e APN 5 23,497,542 (GRCm38) missense probably damaging 1.00
IGL03291:Kmt2e APN 5 23,499,291 (GRCm38) missense probably damaging 1.00
R0035:Kmt2e UTSW 5 23,485,621 (GRCm38) splice site probably benign
R0446:Kmt2e UTSW 5 23,497,534 (GRCm38) splice site probably null
R0498:Kmt2e UTSW 5 23,478,972 (GRCm38) nonsense probably null
R0699:Kmt2e UTSW 5 23,473,583 (GRCm38) missense probably benign 0.01
R0701:Kmt2e UTSW 5 23,473,583 (GRCm38) missense probably benign 0.01
R0761:Kmt2e UTSW 5 23,503,034 (GRCm38) nonsense probably null
R1110:Kmt2e UTSW 5 23,502,655 (GRCm38) missense probably damaging 1.00
R1295:Kmt2e UTSW 5 23,502,404 (GRCm38) missense probably damaging 0.99
R1432:Kmt2e UTSW 5 23,450,321 (GRCm38) missense probably benign 0.39
R1505:Kmt2e UTSW 5 23,500,535 (GRCm38) missense probably null 0.01
R1623:Kmt2e UTSW 5 23,482,502 (GRCm38) missense probably damaging 1.00
R1675:Kmt2e UTSW 5 23,482,453 (GRCm38) nonsense probably null
R1691:Kmt2e UTSW 5 23,464,849 (GRCm38) missense probably damaging 1.00
R1778:Kmt2e UTSW 5 23,492,364 (GRCm38) missense probably damaging 1.00
R1820:Kmt2e UTSW 5 23,473,547 (GRCm38) missense probably damaging 1.00
R1846:Kmt2e UTSW 5 23,499,486 (GRCm38) intron probably benign
R1912:Kmt2e UTSW 5 23,492,395 (GRCm38) missense probably benign 0.07
R2070:Kmt2e UTSW 5 23,501,995 (GRCm38) missense probably benign
R2195:Kmt2e UTSW 5 23,502,196 (GRCm38) splice site probably null
R2571:Kmt2e UTSW 5 23,501,887 (GRCm38) missense probably benign 0.08
R3901:Kmt2e UTSW 5 23,501,642 (GRCm38) missense probably benign 0.02
R3902:Kmt2e UTSW 5 23,501,642 (GRCm38) missense probably benign 0.02
R3905:Kmt2e UTSW 5 23,501,626 (GRCm38) missense probably benign 0.01
R3906:Kmt2e UTSW 5 23,501,626 (GRCm38) missense probably benign 0.01
R3909:Kmt2e UTSW 5 23,501,626 (GRCm38) missense probably benign 0.01
R3956:Kmt2e UTSW 5 23,496,025 (GRCm38) missense probably benign 0.00
R4242:Kmt2e UTSW 5 23,502,822 (GRCm38) unclassified probably benign
R4299:Kmt2e UTSW 5 23,464,914 (GRCm38) missense probably damaging 1.00
R4448:Kmt2e UTSW 5 23,464,790 (GRCm38) missense possibly damaging 0.80
R4528:Kmt2e UTSW 5 23,473,558 (GRCm38) missense possibly damaging 0.69
R4574:Kmt2e UTSW 5 23,492,407 (GRCm38) missense possibly damaging 0.60
R4719:Kmt2e UTSW 5 23,492,315 (GRCm38) missense probably damaging 1.00
R4754:Kmt2e UTSW 5 23,482,441 (GRCm38) missense possibly damaging 0.88
R4787:Kmt2e UTSW 5 23,463,083 (GRCm38) missense possibly damaging 0.65
R4812:Kmt2e UTSW 5 23,502,587 (GRCm38) missense possibly damaging 0.86
R4853:Kmt2e UTSW 5 23,502,341 (GRCm38) missense probably damaging 1.00
R5138:Kmt2e UTSW 5 23,502,695 (GRCm38) missense probably damaging 0.99
R5306:Kmt2e UTSW 5 23,499,333 (GRCm38) missense probably damaging 0.98
R5659:Kmt2e UTSW 5 23,497,807 (GRCm38) missense probably damaging 0.99
R5907:Kmt2e UTSW 5 23,464,706 (GRCm38) missense probably damaging 1.00
R5920:Kmt2e UTSW 5 23,499,442 (GRCm38) missense possibly damaging 0.50
R6280:Kmt2e UTSW 5 23,499,516 (GRCm38) missense possibly damaging 0.48
R6353:Kmt2e UTSW 5 23,493,245 (GRCm38) missense probably damaging 1.00
R6375:Kmt2e UTSW 5 23,499,519 (GRCm38) missense probably benign
R6553:Kmt2e UTSW 5 23,463,026 (GRCm38) missense probably damaging 0.99
R6572:Kmt2e UTSW 5 23,497,581 (GRCm38) missense possibly damaging 0.66
R6678:Kmt2e UTSW 5 23,499,295 (GRCm38) missense possibly damaging 0.54
R6791:Kmt2e UTSW 5 23,499,476 (GRCm38) intron probably benign
R6792:Kmt2e UTSW 5 23,499,476 (GRCm38) intron probably benign
R6794:Kmt2e UTSW 5 23,499,476 (GRCm38) intron probably benign
R6797:Kmt2e UTSW 5 23,482,507 (GRCm38) missense possibly damaging 0.82
R6947:Kmt2e UTSW 5 23,497,545 (GRCm38) missense probably damaging 1.00
R7023:Kmt2e UTSW 5 23,500,487 (GRCm38) missense possibly damaging 0.46
R7036:Kmt2e UTSW 5 23,478,743 (GRCm38) missense probably null 1.00
R7173:Kmt2e UTSW 5 23,464,857 (GRCm38) missense probably damaging 1.00
R7202:Kmt2e UTSW 5 23,492,294 (GRCm38) unclassified probably benign
R7563:Kmt2e UTSW 5 23,500,273 (GRCm38) missense probably damaging 1.00
R7571:Kmt2e UTSW 5 23,478,587 (GRCm38) missense probably damaging 1.00
R7604:Kmt2e UTSW 5 23,501,765 (GRCm38) missense not run
R7722:Kmt2e UTSW 5 23,497,018 (GRCm38) missense probably benign 0.00
R7758:Kmt2e UTSW 5 23,496,070 (GRCm38) missense possibly damaging 0.92
R7794:Kmt2e UTSW 5 23,464,716 (GRCm38) missense probably damaging 1.00
R8137:Kmt2e UTSW 5 23,501,954 (GRCm38) missense probably damaging 1.00
R8341:Kmt2e UTSW 5 23,499,453 (GRCm38) missense probably damaging 0.98
R8383:Kmt2e UTSW 5 23,485,541 (GRCm38) missense probably benign 0.08
R8400:Kmt2e UTSW 5 23,497,092 (GRCm38) missense probably benign 0.17
R8546:Kmt2e UTSW 5 23,481,244 (GRCm38) missense probably damaging 1.00
R8750:Kmt2e UTSW 5 23,493,217 (GRCm38) missense probably benign
R8786:Kmt2e UTSW 5 23,464,866 (GRCm38) missense probably damaging 1.00
R9211:Kmt2e UTSW 5 23,464,772 (GRCm38) missense possibly damaging 0.83
R9660:Kmt2e UTSW 5 23,478,619 (GRCm38) missense probably damaging 1.00
R9786:Kmt2e UTSW 5 23,497,984 (GRCm38) missense probably benign 0.16
RF026:Kmt2e UTSW 5 23,478,509 (GRCm38) critical splice acceptor site probably benign
RF028:Kmt2e UTSW 5 23,478,509 (GRCm38) critical splice acceptor site probably benign
RF040:Kmt2e UTSW 5 23,478,509 (GRCm38) critical splice acceptor site probably benign
RF042:Kmt2e UTSW 5 23,478,509 (GRCm38) critical splice acceptor site probably benign
Z1177:Kmt2e UTSW 5 23,481,208 (GRCm38) critical splice acceptor site probably null
Predicted Primers PCR Primer
(F):5'- TGAGCAGGCAGCCTTGGAGA -3'
(R):5'- CGGCAGCAGGCGGTGGTAA -3'

Sequencing Primer
(F):5'- agtatagtggaaagagcacgg -3'
(R):5'- aggcggtggTAAAGGCAAG -3'
Posted On 2014-04-13