Incidental Mutation 'R1498:Vmn2r6'
ID 169014
Institutional Source Beutler Lab
Gene Symbol Vmn2r6
Ensembl Gene ENSMUSG00000090581
Gene Name vomeronasal 2, receptor 6
Synonyms EG620718, EG667069
MMRRC Submission 039549-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.184) question?
Stock # R1498 (G1)
Quality Score 203
Status Not validated
Chromosome 3
Chromosomal Location 64537561-64565298 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) T to A at 64556469 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Threonine to Serine at position 315 (T315S)
Ref Sequence ENSEMBL: ENSMUSP00000135148 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000165012] [ENSMUST00000176481]
AlphaFold H3BK29
Predicted Effect probably damaging
Transcript: ENSMUST00000165012
AA Change: T226S

PolyPhen 2 Score 0.987 (Sensitivity: 0.73; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000131831
Gene: ENSMUSG00000090581
AA Change: T226S

DomainStartEndE-ValueType
Pfam:ANF_receptor 1 416 1.4e-72 PFAM
Pfam:Peripla_BP_6 58 244 1.2e-10 PFAM
Pfam:NCD3G 458 511 1.8e-17 PFAM
Pfam:7tm_3 542 779 3.9e-76 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000176481
AA Change: T315S

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000135148
Gene: ENSMUSG00000090581
AA Change: T315S

DomainStartEndE-ValueType
signal peptide 1 22 N/A INTRINSIC
Pfam:ANF_receptor 88 505 9.8e-77 PFAM
Pfam:Peripla_BP_6 142 331 3.4e-10 PFAM
Pfam:NCD3G 547 600 5.4e-17 PFAM
Pfam:7tm_3 633 867 3.9e-47 PFAM
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.3%
  • 10x: 96.2%
  • 20x: 92.6%
Validation Efficiency 97% (83/86)
Allele List at MGI
Other mutations in this stock
Total: 84 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1600015I10Rik A G 6: 48,931,371 (GRCm38) H435R probably benign Het
Acly A G 11: 100,483,801 (GRCm38) S799P probably benign Het
Acvr1b T C 15: 101,194,010 (GRCm38) F57S probably benign Het
Adamts5 T A 16: 85,900,102 (GRCm38) T56S possibly damaging Het
Adrb2 T C 18: 62,178,933 (GRCm38) T274A probably damaging Het
Agr3 A T 12: 35,934,380 (GRCm38) probably null Het
Ankrd6 A G 4: 32,810,289 (GRCm38) M405T probably benign Het
Aqp5 T C 15: 99,593,247 (GRCm38) I60T probably damaging Het
Arf5 G T 6: 28,426,154 (GRCm38) R180L probably benign Het
Asap3 A G 4: 136,239,194 (GRCm38) N528D probably benign Het
Atmin G A 8: 116,954,801 (GRCm38) E180K probably benign Het
Bcl11a A T 11: 24,164,005 (GRCm38) E449D probably damaging Het
Cep128 A T 12: 91,366,417 (GRCm38) F25I probably benign Het
Cfp GCAC GC X: 20,929,666 (GRCm38) probably null Het
Chpt1 T A 10: 88,477,104 (GRCm38) Y282F possibly damaging Het
Cul7 A G 17: 46,655,710 (GRCm38) D355G probably benign Het
Daxx T C 17: 33,912,253 (GRCm38) Y385H probably damaging Het
Dnah2 A C 11: 69,520,667 (GRCm38) probably null Het
Dscc1 CTGAATGAAT CTGAAT 15: 55,080,176 (GRCm38) probably benign Het
Erc2 T A 14: 28,302,898 (GRCm38) M578K probably benign Het
Evc T A 5: 37,323,700 (GRCm38) H267L possibly damaging Het
Exosc10 A C 4: 148,581,786 (GRCm38) Q837P possibly damaging Het
Fasn G A 11: 120,815,419 (GRCm38) T1033I probably damaging Het
Fat1 C A 8: 45,025,484 (GRCm38) Y2522* probably null Het
Fbxw8 G A 5: 118,065,785 (GRCm38) probably benign Het
Fyn A G 10: 39,532,124 (GRCm38) D321G possibly damaging Het
Gm14685 G T X: 73,127,655 (GRCm38) G218C probably damaging Het
Gm156 A G 6: 129,771,740 (GRCm38) S105P probably damaging Het
Grm6 G A 11: 50,857,256 (GRCm38) V398M probably damaging Het
Gtpbp1 T A 15: 79,719,021 (GRCm38) probably null Het
Hnf1a A G 5: 114,970,537 (GRCm38) V103A probably damaging Het
Hsp90aa1 A T 12: 110,695,688 (GRCm38) probably null Het
Iqgap2 C T 13: 95,646,805 (GRCm38) V1288I probably benign Het
Irx5 A G 8: 92,359,886 (GRCm38) D199G probably damaging Het
Krt9 G T 11: 100,188,369 (GRCm38) C732* probably null Het
Lifr T C 15: 7,190,618 (GRCm38) S910P probably damaging Het
Lrig1 G A 6: 94,627,987 (GRCm38) A209V possibly damaging Het
Lrrk1 T A 7: 66,302,671 (GRCm38) R506* probably null Het
Lyst T A 13: 13,650,375 (GRCm38) I1525K possibly damaging Het
Mad2l1 C T 6: 66,539,842 (GRCm38) Q173* probably null Het
Mcoln1 T A 8: 3,512,861 (GRCm38) I524N probably damaging Het
Mmp3 A T 9: 7,446,967 (GRCm38) D49V possibly damaging Het
Morc3 A T 16: 93,853,855 (GRCm38) N321I probably damaging Het
Mrpl48 T C 7: 100,546,488 (GRCm38) probably benign Het
Myo6 T A 9: 80,307,679 (GRCm38) D1231E probably damaging Het
Nlrc4 A G 17: 74,446,413 (GRCm38) I325T probably benign Het
Olfr1079 A G 2: 86,538,558 (GRCm38) V117A probably benign Het
Olfr1314 A T 2: 112,092,593 (GRCm38) M36K probably benign Het
Olfr348 A T 2: 36,787,346 (GRCm38) I274F probably damaging Het
Olfr699 T C 7: 106,790,416 (GRCm38) Y195C possibly damaging Het
Olfr894 C G 9: 38,219,380 (GRCm38) P183A probably damaging Het
Parvg T A 15: 84,334,631 (GRCm38) S230T possibly damaging Het
Pcca T C 14: 122,616,818 (GRCm38) I118T probably damaging Het
Pde6a A G 18: 61,232,860 (GRCm38) N219S possibly damaging Het
Phldb1 G T 9: 44,701,618 (GRCm38) P935Q possibly damaging Het
Plppr5 T C 3: 117,662,612 (GRCm38) S261P probably damaging Het
Ppl T C 16: 5,104,765 (GRCm38) N260S probably benign Het
Ppp1r3e A T 14: 54,876,425 (GRCm38) H263Q probably benign Het
Ppp3cb T C 14: 20,509,499 (GRCm38) probably null Het
Ppt2 A T 17: 34,623,101 (GRCm38) D185E probably benign Het
Prr27 A T 5: 87,850,741 (GRCm38) probably benign Het
Ptcd3 A T 6: 71,893,495 (GRCm38) V327E probably damaging Het
Rsf1 GCG GCGACG 7: 97,579,907 (GRCm38) probably benign Het
Rtp1 A T 16: 23,431,220 (GRCm38) M112L probably benign Het
Slc22a5 A T 11: 53,869,314 (GRCm38) L392Q probably damaging Het
Slc6a7 A G 18: 60,996,692 (GRCm38) I614T probably benign Het
Slu7 C A 11: 43,438,217 (GRCm38) P89T possibly damaging Het
Smarcc2 T C 10: 128,482,192 (GRCm38) V618A probably benign Het
Sorl1 C T 9: 42,041,073 (GRCm38) R729Q probably damaging Het
Sptbn2 T C 19: 4,744,246 (GRCm38) F1493L possibly damaging Het
Sulf1 C T 1: 12,848,350 (GRCm38) T66I probably damaging Het
Tgtp2 A G 11: 49,059,338 (GRCm38) Y136H probably damaging Het
Tmem117 T C 15: 94,638,361 (GRCm38) F92S probably damaging Het
Tmprss9 T A 10: 80,895,100 (GRCm38) V820E probably benign Het
Tpcn2 A G 7: 145,268,911 (GRCm38) Y266H probably damaging Het
Trat1 A G 16: 48,734,941 (GRCm38) S143P probably benign Het
Vmn1r49 T A 6: 90,072,316 (GRCm38) R235W probably damaging Het
Vmn1r71 A T 7: 10,748,648 (GRCm38) C38S probably benign Het
Wdr36 A G 18: 32,852,968 (GRCm38) D575G possibly damaging Het
Zfp292 G T 4: 34,805,397 (GRCm38) A2549E possibly damaging Het
Zfp354a A T 11: 51,070,246 (GRCm38) H426L probably damaging Het
Zfp407 C T 18: 84,559,773 (GRCm38) A1072T probably benign Het
Zfp648 T A 1: 154,205,373 (GRCm38) I426N probably damaging Het
Zfp72 T C 13: 74,372,617 (GRCm38) N114S probably benign Het
Other mutations in Vmn2r6
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01547:Vmn2r6 APN 3 64,538,104 (GRCm38) missense probably damaging 1.00
IGL01968:Vmn2r6 APN 3 64,556,345 (GRCm38) missense possibly damaging 0.94
IGL02009:Vmn2r6 APN 3 64,537,902 (GRCm38) missense possibly damaging 0.61
IGL02039:Vmn2r6 APN 3 64,556,189 (GRCm38) missense probably damaging 1.00
IGL02652:Vmn2r6 APN 3 64,556,328 (GRCm38) missense probably benign 0.24
IGL02737:Vmn2r6 APN 3 64,556,490 (GRCm38) missense possibly damaging 0.55
IGL02808:Vmn2r6 APN 3 64,556,496 (GRCm38) missense probably damaging 1.00
IGL03066:Vmn2r6 APN 3 64,565,153 (GRCm38) missense probably damaging 0.99
IGL03331:Vmn2r6 APN 3 64,538,007 (GRCm38) missense probably damaging 1.00
BB010:Vmn2r6 UTSW 3 64,559,803 (GRCm38) missense probably benign 0.02
BB020:Vmn2r6 UTSW 3 64,559,803 (GRCm38) missense probably benign 0.02
R0010:Vmn2r6 UTSW 3 64,559,545 (GRCm38) nonsense probably null
R0206:Vmn2r6 UTSW 3 64,539,912 (GRCm38) missense probably benign
R0206:Vmn2r6 UTSW 3 64,539,912 (GRCm38) missense probably benign
R0208:Vmn2r6 UTSW 3 64,539,912 (GRCm38) missense probably benign
R0427:Vmn2r6 UTSW 3 64,559,587 (GRCm38) missense probably damaging 1.00
R0466:Vmn2r6 UTSW 3 64,556,302 (GRCm38) missense probably damaging 1.00
R1018:Vmn2r6 UTSW 3 64,556,840 (GRCm38) missense probably benign 0.00
R1104:Vmn2r6 UTSW 3 64,538,066 (GRCm38) missense possibly damaging 0.93
R1186:Vmn2r6 UTSW 3 64,565,067 (GRCm38) missense probably benign 0.01
R1245:Vmn2r6 UTSW 3 64,556,790 (GRCm38) missense possibly damaging 0.53
R1295:Vmn2r6 UTSW 3 64,538,273 (GRCm38) missense probably damaging 1.00
R1473:Vmn2r6 UTSW 3 64,538,158 (GRCm38) nonsense probably null
R1925:Vmn2r6 UTSW 3 64,556,277 (GRCm38) missense possibly damaging 0.87
R2044:Vmn2r6 UTSW 3 64,537,841 (GRCm38) missense probably damaging 0.96
R2069:Vmn2r6 UTSW 3 64,556,098 (GRCm38) missense possibly damaging 0.89
R2253:Vmn2r6 UTSW 3 64,559,718 (GRCm38) missense probably damaging 1.00
R2261:Vmn2r6 UTSW 3 64,556,669 (GRCm38) missense probably benign 0.24
R2262:Vmn2r6 UTSW 3 64,556,669 (GRCm38) missense probably benign 0.24
R2350:Vmn2r6 UTSW 3 64,556,352 (GRCm38) missense probably benign 0.01
R2680:Vmn2r6 UTSW 3 64,538,286 (GRCm38) missense possibly damaging 0.91
R2846:Vmn2r6 UTSW 3 64,556,790 (GRCm38) missense possibly damaging 0.53
R2860:Vmn2r6 UTSW 3 64,547,339 (GRCm38) missense probably benign 0.00
R2861:Vmn2r6 UTSW 3 64,547,339 (GRCm38) missense probably benign 0.00
R3766:Vmn2r6 UTSW 3 64,556,508 (GRCm38) missense probably benign 0.19
R3870:Vmn2r6 UTSW 3 64,556,621 (GRCm38) missense probably damaging 0.96
R4018:Vmn2r6 UTSW 3 64,556,472 (GRCm38) missense probably benign 0.05
R4024:Vmn2r6 UTSW 3 64,538,250 (GRCm38) missense possibly damaging 0.73
R4026:Vmn2r6 UTSW 3 64,538,250 (GRCm38) missense possibly damaging 0.73
R4227:Vmn2r6 UTSW 3 64,537,948 (GRCm38) missense probably damaging 0.99
R4526:Vmn2r6 UTSW 3 64,537,724 (GRCm38) missense probably benign 0.32
R4570:Vmn2r6 UTSW 3 64,559,647 (GRCm38) missense probably benign 0.31
R4894:Vmn2r6 UTSW 3 64,547,408 (GRCm38) missense probably benign
R4934:Vmn2r6 UTSW 3 64,556,345 (GRCm38) missense probably damaging 0.99
R5057:Vmn2r6 UTSW 3 64,537,786 (GRCm38) missense probably damaging 1.00
R5059:Vmn2r6 UTSW 3 64,537,623 (GRCm38) missense possibly damaging 0.89
R5148:Vmn2r6 UTSW 3 64,556,594 (GRCm38) missense probably damaging 0.99
R5155:Vmn2r6 UTSW 3 64,538,514 (GRCm38) missense probably benign 0.44
R5179:Vmn2r6 UTSW 3 64,537,990 (GRCm38) missense probably benign 0.00
R5256:Vmn2r6 UTSW 3 64,556,842 (GRCm38) missense probably benign 0.33
R5861:Vmn2r6 UTSW 3 64,556,033 (GRCm38) missense probably benign 0.00
R5950:Vmn2r6 UTSW 3 64,565,231 (GRCm38) missense probably benign 0.05
R6081:Vmn2r6 UTSW 3 64,556,532 (GRCm38) missense probably benign 0.25
R6173:Vmn2r6 UTSW 3 64,559,755 (GRCm38) missense probably damaging 1.00
R6190:Vmn2r6 UTSW 3 64,538,003 (GRCm38) missense probably benign 0.04
R6240:Vmn2r6 UTSW 3 64,556,805 (GRCm38) missense probably damaging 1.00
R6433:Vmn2r6 UTSW 3 64,547,380 (GRCm38) nonsense probably null
R6645:Vmn2r6 UTSW 3 64,556,876 (GRCm38) missense probably damaging 1.00
R6791:Vmn2r6 UTSW 3 64,538,159 (GRCm38) missense probably damaging 1.00
R7265:Vmn2r6 UTSW 3 64,556,774 (GRCm38) missense probably benign 0.00
R7503:Vmn2r6 UTSW 3 64,539,951 (GRCm38) nonsense probably null
R7562:Vmn2r6 UTSW 3 64,556,520 (GRCm38) missense probably benign 0.00
R7584:Vmn2r6 UTSW 3 64,565,262 (GRCm38) missense probably benign 0.07
R7611:Vmn2r6 UTSW 3 64,565,142 (GRCm38) missense probably damaging 0.98
R7759:Vmn2r6 UTSW 3 64,556,570 (GRCm38) missense probably damaging 1.00
R7834:Vmn2r6 UTSW 3 64,538,022 (GRCm38) missense probably damaging 1.00
R7933:Vmn2r6 UTSW 3 64,559,803 (GRCm38) missense probably benign 0.02
R7982:Vmn2r6 UTSW 3 64,559,820 (GRCm38) missense probably damaging 1.00
R8024:Vmn2r6 UTSW 3 64,559,824 (GRCm38) missense probably benign 0.40
R8074:Vmn2r6 UTSW 3 64,547,643 (GRCm38) intron probably benign
R8169:Vmn2r6 UTSW 3 64,539,889 (GRCm38) missense probably benign 0.01
R8337:Vmn2r6 UTSW 3 64,556,105 (GRCm38) nonsense probably null
R8736:Vmn2r6 UTSW 3 64,559,800 (GRCm38) missense probably damaging 1.00
R8962:Vmn2r6 UTSW 3 64,556,155 (GRCm38) missense probably damaging 1.00
R9139:Vmn2r6 UTSW 3 64,556,856 (GRCm38) missense probably benign 0.12
R9206:Vmn2r6 UTSW 3 64,559,611 (GRCm38) missense probably damaging 0.97
R9295:Vmn2r6 UTSW 3 64,556,063 (GRCm38) missense probably benign 0.00
R9332:Vmn2r6 UTSW 3 64,547,250 (GRCm38) missense probably benign 0.01
R9616:Vmn2r6 UTSW 3 64,538,303 (GRCm38) missense probably damaging 1.00
R9663:Vmn2r6 UTSW 3 64,556,128 (GRCm38) missense possibly damaging 0.90
R9685:Vmn2r6 UTSW 3 64,556,660 (GRCm38) missense probably benign 0.19
X0020:Vmn2r6 UTSW 3 64,538,450 (GRCm38) missense probably benign
X0066:Vmn2r6 UTSW 3 64,547,378 (GRCm38) missense probably damaging 1.00
Z1176:Vmn2r6 UTSW 3 64,556,325 (GRCm38) missense probably damaging 0.98
Predicted Primers PCR Primer
(F):5'- GGTGGTCCACATTGTATGGCACAG -3'
(R):5'- AGGTGGGATATGCTTCTTCCTCCTC -3'

Sequencing Primer
(F):5'- TTGGGCCAGGTACAGTTAAAAG -3'
(R):5'- CCCAGTGATAAATTCCAGTCTGAGG -3'
Posted On 2014-04-13