Mutagenetix > Incidental Mutation

Incidental Mutation 'R1498:Lrig1'

169029

Institutional Source

Beutler Lab

Gene Symbol

Lrig1

Ensembl Gene

ENSMUSG00000030029

Gene Name

leucine-rich repeats and immunoglobulin-like domains 1

Synonyms

LIG-1, Img

MMRRC Submission

039549-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1498 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

94581510-94677139 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 94604968 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Valine at position 209 (A209V)

Ref Sequence

ENSEMBL: ENSMUSP00000144963 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032105] [ENSMUST00000101126] [ENSMUST00000204645]

AlphaFold

P70193

Predicted Effect

possibly damaging
Transcript: ENSMUST00000032105
AA Change: A209V

PolyPhen 2 Score 0.888 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000032105
Gene: ENSMUSG00000030029
AA Change: A209V

Domain	Start	End	E-Value	Type
signal peptide	1	34	N/A	INTRINSIC
LRRNT	42	74	5.82e-6	SMART
LRR	68	92	4.83e0	SMART
LRR	93	115	9.96e-1	SMART
LRR	142	163	6.22e0	SMART
LRR	166	187	1.81e1	SMART
LRR	190	212	5.72e0	SMART
LRR	213	235	1.06e1	SMART
LRR_TYP	236	259	2.79e-4	SMART
LRR	260	283	2.54e1	SMART
LRR	284	307	9.96e-1	SMART
LRR	308	331	4.21e1	SMART
LRR_TYP	332	355	8.6e-5	SMART
LRR	356	382	1.06e1	SMART
LRR	383	406	9.96e-1	SMART
LRR_TYP	407	430	3.34e-2	SMART
LRRCT	442	492	3.5e-15	SMART
IGc2	509	586	1.34e-4	SMART
IGc2	613	681	2.87e-13	SMART
IGc2	707	772	6.44e-16	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000101126
AA Change: A209V

PolyPhen 2 Score 0.888 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000098686
Gene: ENSMUSG00000030029
AA Change: A209V

Domain	Start	End	E-Value	Type
signal peptide	1	34	N/A	INTRINSIC
LRRNT	42	74	5.82e-6	SMART
LRR	68	92	4.83e0	SMART
LRR	93	115	9.96e-1	SMART
LRR	142	163	6.22e0	SMART
LRR	166	187	1.81e1	SMART
LRR	190	212	5.72e0	SMART
LRR	213	235	1.06e1	SMART
LRR_TYP	236	259	2.79e-4	SMART
LRR	260	283	2.54e1	SMART
LRR	284	307	9.96e-1	SMART
LRR	308	331	4.21e1	SMART
LRR_TYP	332	355	8.6e-5	SMART
LRR	356	382	1.06e1	SMART
LRR	383	406	9.96e-1	SMART
LRR_TYP	407	430	3.34e-2	SMART
LRRCT	442	492	3.5e-15	SMART
IGc2	509	586	1.34e-4	SMART
IGc2	613	681	2.87e-13	SMART
IGc2	707	772	6.44e-16	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000124165

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000141014

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150811

Predicted Effect

possibly damaging
Transcript: ENSMUST00000204645
AA Change: A209V

PolyPhen 2 Score 0.888 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000144963
Gene: ENSMUSG00000030029
AA Change: A209V

Domain	Start	End	E-Value	Type
signal peptide	1	34	N/A	INTRINSIC
LRRNT	42	74	5.82e-6	SMART
LRR	68	92	4.83e0	SMART
LRR	93	115	9.96e-1	SMART
LRR	142	163	6.22e0	SMART
LRR	166	187	1.81e1	SMART
LRR	190	212	5.72e0	SMART
LRR	213	235	1.06e1	SMART
LRR_TYP	236	259	2.79e-4	SMART
LRR	260	283	2.54e1	SMART
LRR	284	307	9.96e-1	SMART
LRR	308	331	4.21e1	SMART
LRR_TYP	332	355	8.6e-5	SMART
LRR	356	382	1.06e1	SMART
LRR	383	406	9.96e-1	SMART
LRR_TYP	407	430	3.34e-2	SMART
LRRCT	442	492	3.5e-15	SMART
IGc2	509	586	1.34e-4	SMART
IGc2	613	681	2.87e-13	SMART
IGc2	707	772	6.44e-16	SMART

Meta Mutation Damage Score

0.0907

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.2%
20x: 92.6%

Validation Efficiency

97% (83/86)

MGI Phenotype

PHENOTYPE: Homozygous null mice developed psoriasiform epidermal hyperplasia. Homozygotes exhibit hair follicle, epidermis, vertebral, eye and hearing abnormalities, decreased body size and fat amount, and increased susceptibility to bacterial infection. [provided by MGI curators]

Allele List at MGI

All alleles(5) : Targeted(4) Gene trapped(1)

Other mutations in this stock

Total: 84 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acly	A	G	11: 100,374,627 (GRCm39)	S799P	probably benign	Het
Acvr1b	T	C	15: 101,091,891 (GRCm39)	F57S	probably benign	Het
Adamts5	T	A	16: 85,696,990 (GRCm39)	T56S	possibly damaging	Het
Adrb2	T	C	18: 62,312,004 (GRCm39)	T274A	probably damaging	Het
Agr3	A	T	12: 35,984,379 (GRCm39)		probably null	Het
Ankrd6	A	G	4: 32,810,289 (GRCm39)	M405T	probably benign	Het
Aoc1l2	A	G	6: 48,908,305 (GRCm39)	H435R	probably benign	Het
Aqp5	T	C	15: 99,491,128 (GRCm39)	I60T	probably damaging	Het
Arf5	G	T	6: 28,426,153 (GRCm39)	R180L	probably benign	Het
Asap3	A	G	4: 135,966,505 (GRCm39)	N528D	probably benign	Het
Atmin	G	A	8: 117,681,540 (GRCm39)	E180K	probably benign	Het
Bcl11a	A	T	11: 24,114,005 (GRCm39)	E449D	probably damaging	Het
Cep128	A	T	12: 91,333,191 (GRCm39)	F25I	probably benign	Het
Cfp	GCAC	GC	X: 20,795,905 (GRCm39)		probably null	Het
Chpt1	T	A	10: 88,312,966 (GRCm39)	Y282F	possibly damaging	Het
Cul7	A	G	17: 46,966,636 (GRCm39)	D355G	probably benign	Het
Daxx	T	C	17: 34,131,227 (GRCm39)	Y385H	probably damaging	Het
Dnah2	A	C	11: 69,411,493 (GRCm39)		probably null	Het
Dscc1	CTGAATGAAT	CTGAAT	15: 54,943,572 (GRCm39)		probably benign	Het
Erc2	T	A	14: 28,024,855 (GRCm39)	M578K	probably benign	Het
Evc	T	A	5: 37,481,044 (GRCm39)	H267L	possibly damaging	Het
Exosc10	A	C	4: 148,666,243 (GRCm39)	Q837P	possibly damaging	Het
Fasn	G	A	11: 120,706,245 (GRCm39)	T1033I	probably damaging	Het
Fat1	C	A	8: 45,478,521 (GRCm39)	Y2522*	probably null	Het
Fbxw8	G	A	5: 118,203,850 (GRCm39)		probably benign	Het
Fyn	A	G	10: 39,408,120 (GRCm39)	D321G	possibly damaging	Het
Grm6	G	A	11: 50,748,083 (GRCm39)	V398M	probably damaging	Het
Gtpbp1	T	A	15: 79,603,222 (GRCm39)		probably null	Het
Hnf1a	A	G	5: 115,108,596 (GRCm39)	V103A	probably damaging	Het
Hsp90aa1	A	T	12: 110,662,122 (GRCm39)		probably null	Het
Iqgap2	C	T	13: 95,783,313 (GRCm39)	V1288I	probably benign	Het
Irx5	A	G	8: 93,086,514 (GRCm39)	D199G	probably damaging	Het
Klrh1	A	G	6: 129,748,703 (GRCm39)	S105P	probably damaging	Het
Krt9	G	T	11: 100,079,195 (GRCm39)	C732*	probably null	Het
Lifr	T	C	15: 7,220,099 (GRCm39)	S910P	probably damaging	Het
Lrrk1	T	A	7: 65,952,419 (GRCm39)	R506*	probably null	Het
Lyst	T	A	13: 13,824,960 (GRCm39)	I1525K	possibly damaging	Het
Mad2l1	C	T	6: 66,516,826 (GRCm39)	Q173*	probably null	Het
Mcoln1	T	A	8: 3,562,861 (GRCm39)	I524N	probably damaging	Het
Mmp3	A	T	9: 7,446,967 (GRCm39)	D49V	possibly damaging	Het
Morc3	A	T	16: 93,650,743 (GRCm39)	N321I	probably damaging	Het
Mrpl48	T	C	7: 100,195,695 (GRCm39)		probably benign	Het
Myo6	T	A	9: 80,214,961 (GRCm39)	D1231E	probably damaging	Het
Nlrc4	A	G	17: 74,753,408 (GRCm39)	I325T	probably benign	Het
Or1j19	A	T	2: 36,677,358 (GRCm39)	I274F	probably damaging	Het
Or2ag17	T	C	7: 106,389,623 (GRCm39)	Y195C	possibly damaging	Het
Or4f61	A	T	2: 111,922,938 (GRCm39)	M36K	probably benign	Het
Or8c16	C	G	9: 38,130,676 (GRCm39)	P183A	probably damaging	Het
Or8k32	A	G	2: 86,368,902 (GRCm39)	V117A	probably benign	Het
Parvg	T	A	15: 84,218,832 (GRCm39)	S230T	possibly damaging	Het
Pcca	T	C	14: 122,854,230 (GRCm39)	I118T	probably damaging	Het
Pde6a	A	G	18: 61,365,932 (GRCm39)	N219S	possibly damaging	Het
Phldb1	G	T	9: 44,612,915 (GRCm39)	P935Q	possibly damaging	Het
Plppr5	T	C	3: 117,456,261 (GRCm39)	S261P	probably damaging	Het
Ppl	T	C	16: 4,922,629 (GRCm39)	N260S	probably benign	Het
Ppp1r3e	A	T	14: 55,113,882 (GRCm39)	H263Q	probably benign	Het
Ppp3cb	T	C	14: 20,559,567 (GRCm39)		probably null	Het
Ppt2	A	T	17: 34,842,075 (GRCm39)	D185E	probably benign	Het
Prr27	A	T	5: 87,998,600 (GRCm39)		probably benign	Het
Ptcd3	A	T	6: 71,870,479 (GRCm39)	V327E	probably damaging	Het
Pwwp4a	G	T	X: 72,171,261 (GRCm39)	G218C	probably damaging	Het
Rsf1	GCG	GCGACG	7: 97,229,114 (GRCm39)		probably benign	Het
Rtp1	A	T	16: 23,249,970 (GRCm39)	M112L	probably benign	Het
Slc22a5	A	T	11: 53,760,140 (GRCm39)	L392Q	probably damaging	Het
Slc6a7	A	G	18: 61,129,764 (GRCm39)	I614T	probably benign	Het
Slu7	C	A	11: 43,329,044 (GRCm39)	P89T	possibly damaging	Het
Smarcc2	T	C	10: 128,318,061 (GRCm39)	V618A	probably benign	Het
Sorl1	C	T	9: 41,952,369 (GRCm39)	R729Q	probably damaging	Het
Sptbn2	T	C	19: 4,794,274 (GRCm39)	F1493L	possibly damaging	Het
Sulf1	C	T	1: 12,918,574 (GRCm39)	T66I	probably damaging	Het
Tgtp2	A	G	11: 48,950,165 (GRCm39)	Y136H	probably damaging	Het
Tmem117	T	C	15: 94,536,242 (GRCm39)	F92S	probably damaging	Het
Tmprss9	T	A	10: 80,730,934 (GRCm39)	V820E	probably benign	Het
Tpcn2	A	G	7: 144,822,648 (GRCm39)	Y266H	probably damaging	Het
Trat1	A	G	16: 48,555,304 (GRCm39)	S143P	probably benign	Het
Vmn1r49	T	A	6: 90,049,298 (GRCm39)	R235W	probably damaging	Het
Vmn1r71	A	T	7: 10,482,575 (GRCm39)	C38S	probably benign	Het
Vmn2r6	T	A	3: 64,463,890 (GRCm39)	T315S	probably damaging	Het
Wdr36	A	G	18: 32,986,021 (GRCm39)	D575G	possibly damaging	Het
Zfp292	G	T	4: 34,805,397 (GRCm39)	A2549E	possibly damaging	Het
Zfp354a	A	T	11: 50,961,073 (GRCm39)	H426L	probably damaging	Het
Zfp407	C	T	18: 84,577,898 (GRCm39)	A1072T	probably benign	Het
Zfp648	T	A	1: 154,081,119 (GRCm39)	I426N	probably damaging	Het
Zfp87	T	C	13: 74,520,736 (GRCm39)	N114S	probably benign	Het

Other mutations in Lrig1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00474:Lrig1	APN	6	94,588,385 (GRCm39)	missense	probably damaging	0.99
IGL01356:Lrig1	APN	6	94,586,874 (GRCm39)	missense	probably damaging	1.00
IGL01356:Lrig1	APN	6	94,631,901 (GRCm39)	missense	probably benign	0.00
IGL02001:Lrig1	APN	6	94,584,305 (GRCm39)	missense	probably benign	0.00
IGL02019:Lrig1	APN	6	94,593,410 (GRCm39)	missense	probably damaging	0.98
IGL02177:Lrig1	APN	6	94,640,977 (GRCm39)	missense	possibly damaging	0.76
IGL02274:Lrig1	APN	6	94,640,919 (GRCm39)	missense	possibly damaging	0.90
IGL03197:Lrig1	APN	6	94,583,099 (GRCm39)	missense	probably benign
IGL03263:Lrig1	APN	6	94,588,628 (GRCm39)	missense	probably benign	0.00
IGL03327:Lrig1	APN	6	94,583,104 (GRCm39)	missense	probably benign	0.10
N/A - 293:Lrig1	UTSW	6	94,586,068 (GRCm39)	missense	probably benign
R0019:Lrig1	UTSW	6	94,584,330 (GRCm39)	nonsense	probably null
R0019:Lrig1	UTSW	6	94,584,330 (GRCm39)	nonsense	probably null
R0961:Lrig1	UTSW	6	94,640,895 (GRCm39)	splice site	probably benign
R1018:Lrig1	UTSW	6	94,599,583 (GRCm39)	splice site	probably benign
R1381:Lrig1	UTSW	6	94,583,111 (GRCm39)	missense	probably benign	0.04
R1473:Lrig1	UTSW	6	94,584,294 (GRCm39)	missense	probably benign	0.16
R1888:Lrig1	UTSW	6	94,631,859 (GRCm39)	missense	probably benign	0.03
R1888:Lrig1	UTSW	6	94,631,859 (GRCm39)	missense	probably benign	0.03
R2273:Lrig1	UTSW	6	94,585,124 (GRCm39)	missense	probably damaging	1.00
R2513:Lrig1	UTSW	6	94,594,347 (GRCm39)	splice site	probably null
R3001:Lrig1	UTSW	6	94,585,758 (GRCm39)	missense	probably damaging	1.00
R3002:Lrig1	UTSW	6	94,585,758 (GRCm39)	missense	probably damaging	1.00
R3732:Lrig1	UTSW	6	94,588,557 (GRCm39)	missense	possibly damaging	0.86
R3732:Lrig1	UTSW	6	94,588,557 (GRCm39)	missense	possibly damaging	0.86
R3733:Lrig1	UTSW	6	94,588,557 (GRCm39)	missense	possibly damaging	0.86
R3772:Lrig1	UTSW	6	94,582,798 (GRCm39)	missense	probably benign	0.00
R4089:Lrig1	UTSW	6	94,586,840 (GRCm39)	missense	possibly damaging	0.83
R4093:Lrig1	UTSW	6	94,590,559 (GRCm39)	missense	probably benign	0.10
R4095:Lrig1	UTSW	6	94,590,559 (GRCm39)	missense	probably benign	0.10
R4225:Lrig1	UTSW	6	94,599,639 (GRCm39)	missense	probably damaging	1.00
R4917:Lrig1	UTSW	6	94,586,700 (GRCm39)	missense	probably damaging	1.00
R4951:Lrig1	UTSW	6	94,640,959 (GRCm39)	missense	probably damaging	1.00
R4976:Lrig1	UTSW	6	94,602,043 (GRCm39)	missense	probably damaging	1.00
R5000:Lrig1	UTSW	6	94,588,430 (GRCm39)	missense	probably damaging	1.00
R5149:Lrig1	UTSW	6	94,605,025 (GRCm39)	missense	possibly damaging	0.93
R5732:Lrig1	UTSW	6	94,676,520 (GRCm39)	nonsense	probably null
R5988:Lrig1	UTSW	6	94,605,023 (GRCm39)	missense	probably damaging	0.99
R6064:Lrig1	UTSW	6	94,603,428 (GRCm39)	missense	probably damaging	1.00
R6292:Lrig1	UTSW	6	94,593,426 (GRCm39)	missense	probably damaging	1.00
R6723:Lrig1	UTSW	6	94,603,386 (GRCm39)	missense	probably damaging	1.00
R6815:Lrig1	UTSW	6	94,602,010 (GRCm39)	missense	probably damaging	1.00
R6889:Lrig1	UTSW	6	94,602,044 (GRCm39)	missense	probably benign	0.07
R6995:Lrig1	UTSW	6	94,588,610 (GRCm39)	missense	possibly damaging	0.95
R7404:Lrig1	UTSW	6	94,603,452 (GRCm39)	missense	probably damaging	1.00
R7487:Lrig1	UTSW	6	94,583,099 (GRCm39)	missense	probably benign
R7732:Lrig1	UTSW	6	94,603,358 (GRCm39)	missense	probably benign	0.05
R7915:Lrig1	UTSW	6	94,607,082 (GRCm39)	critical splice donor site	probably null
R8133:Lrig1	UTSW	6	94,588,610 (GRCm39)	missense	possibly damaging	0.95
R8768:Lrig1	UTSW	6	94,631,840 (GRCm39)	missense	possibly damaging	0.88
R9045:Lrig1	UTSW	6	94,585,688 (GRCm39)	critical splice donor site	probably null
R9227:Lrig1	UTSW	6	94,607,113 (GRCm39)	missense	probably damaging	1.00
Z1176:Lrig1	UTSW	6	94,586,007 (GRCm39)	missense	possibly damaging	0.50

Predicted Primers

PCR Primer
(F):5'- GGAGGCTAATCATCCAAGCACGAG -3'
(R):5'- TAGCACTTTTCCTAGCGGACCCAG -3'

Sequencing Primer
(F):5'- AGACCCAGCTCCTAATTTGC -3'
(R):5'- TGGATCTGGAGGCACAAGG -3'

Posted On

2014-04-13