Mutagenetix > Incidental Mutation

Incidental Mutation 'R1500:Chd1l'

169163

Institutional Source

Beutler Lab

Gene Symbol

Chd1l

Ensembl Gene

ENSMUSG00000028089

Gene Name

chromodomain helicase DNA binding protein 1-like

Synonyms

Snf2p, 4432404A22Rik

MMRRC Submission

039551-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.243) question?

Stock #

R1500 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

97468058-97517519 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 97490121 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Valine at position 478 (A478V)

Ref Sequence

ENSEMBL: ENSMUSP00000029730 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029730]

AlphaFold

Q9CXF7

Predicted Effect

probably benign
Transcript: ENSMUST00000029730
AA Change: A478V

PolyPhen 2 Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000029730
Gene: ENSMUSG00000028089
AA Change: A478V

Domain	Start	End	E-Value	Type
DEXDc	36	224	1.83e-38	SMART
HELICc	371	453	7.45e-21	SMART
low complexity region	548	570	N/A	INTRINSIC
coiled coil region	643	680	N/A	INTRINSIC
low complexity region	692	709	N/A	INTRINSIC
PDB:2FG1\|A	718	878	6e-9	PDB

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000197304

Meta Mutation Damage Score

0.0638

Coding Region Coverage

1x: 98.9%
3x: 97.8%
10x: 94.7%
20x: 87.1%

Validation Efficiency

95% (81/85)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a DNA helicase protein involved in DNA repair. The protein converts ATP to add poly(ADP-ribose) as it regulates chromatin relaxation following DNA damage. Overexpression of this gene has been linked to several types of cancers. [provided by RefSeq, Feb 2017]

Allele List at MGI

Other mutations in this stock

Total: 81 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcg1	A	G	17: 31,330,253 (GRCm39)	D518G	probably benign	Het
Acaca	T	A	11: 84,184,810 (GRCm39)	D96E	probably benign	Het
Actbl2	G	A	13: 111,391,854 (GRCm39)	R63Q	probably damaging	Het
Adamts6	T	A	13: 104,449,389 (GRCm39)	H266Q	probably damaging	Het
Aff4	T	C	11: 53,263,205 (GRCm39)	V75A	probably benign	Het
Ank2	A	G	3: 126,726,631 (GRCm39)	S888P	probably benign	Het
Ano7	T	C	1: 93,325,050 (GRCm39)	F534S	probably damaging	Het
Arhgef6	T	C	X: 56,383,922 (GRCm39)	M5V	probably benign	Het
Bcam	T	A	7: 19,492,889 (GRCm39)	D484V	possibly damaging	Het
Bltp2	C	A	11: 78,174,958 (GRCm39)	Q1698K	possibly damaging	Het
Ccdc88a	T	C	11: 29,432,713 (GRCm39)	Y1240H	probably benign	Het
Cfh	T	C	1: 140,028,614 (GRCm39)	Y500C	probably damaging	Het
Dnah1	T	C	14: 31,038,715 (GRCm39)	D122G	probably benign	Het
Dnah11	A	T	12: 117,976,564 (GRCm39)		probably null	Het
Dnah17	T	C	11: 117,991,879 (GRCm39)	K1230E	probably benign	Het
Dync1h1	G	A	12: 110,602,943 (GRCm39)	E2195K	probably benign	Het
E330020D12Rik	A	T	1: 153,284,125 (GRCm39)		noncoding transcript	Het
Ece2	T	C	16: 20,462,992 (GRCm39)	L639P	probably damaging	Het
Epha3	A	T	16: 63,416,025 (GRCm39)	V658E	probably benign	Het
Erbb2	C	T	11: 98,319,804 (GRCm39)	T632I	probably damaging	Het
Erc2	A	G	14: 27,993,617 (GRCm39)	T883A	probably damaging	Het
Extl2	T	C	3: 115,820,789 (GRCm39)	V198A	probably benign	Het
Fktn	G	T	4: 53,735,065 (GRCm39)	M234I	probably benign	Het
Ggt7	A	G	2: 155,340,966 (GRCm39)	S400P	probably benign	Het
Gldc	A	C	19: 30,091,225 (GRCm39)	V790G	possibly damaging	Het
Gm14496	A	C	2: 181,633,026 (GRCm39)	Q3P	probably benign	Het
H2-D1	G	A	17: 35,482,564 (GRCm39)	E95K	probably benign	Het
Ikzf3	T	C	11: 98,409,521 (GRCm39)	E14G	probably benign	Het
Jag1	A	T	2: 136,957,558 (GRCm39)	N51K	possibly damaging	Het
Khdrbs3	A	G	15: 68,800,635 (GRCm39)	D14G	possibly damaging	Het
Krt84	A	G	15: 101,438,659 (GRCm39)	V276A	probably damaging	Het
Lamb1	T	C	12: 31,348,948 (GRCm39)	I660T	possibly damaging	Het
Lcmt2	A	T	2: 120,970,488 (GRCm39)	S198R	probably benign	Het
Lcn6	G	A	2: 25,567,131 (GRCm39)	R44H	probably benign	Het
Lrfn5	A	T	12: 61,886,527 (GRCm39)	H105L	probably damaging	Het
Lrit1	G	A	14: 36,784,091 (GRCm39)	R473K	probably benign	Het
Marchf1	A	G	8: 66,921,042 (GRCm39)	T495A	probably damaging	Het
Marveld3	T	G	8: 110,675,174 (GRCm39)		probably null	Het
Mbd3	T	C	10: 80,230,420 (GRCm39)	D160G	possibly damaging	Het
Mrc2	T	G	11: 105,238,551 (GRCm39)	C1233G	probably damaging	Het
Ms4a13	T	G	19: 11,161,225 (GRCm39)	T105P	probably damaging	Het
Mtbp	T	C	15: 55,480,951 (GRCm39)	Y306H	probably damaging	Het
Muc3a	T	C	5: 137,244,958 (GRCm39)		probably benign	Het
Myo1g	T	A	11: 6,470,811 (GRCm39)	Y15F	probably benign	Het
Nae1	A	T	8: 105,250,216 (GRCm39)	Y226N	probably benign	Het
Nlrp9a	A	G	7: 26,267,316 (GRCm39)	S715G	probably benign	Het
Or1j10	A	T	2: 36,267,633 (GRCm39)	M282L	probably benign	Het
Or2ag17	T	C	7: 106,390,028 (GRCm39)	Y60C	probably damaging	Het
Or4s2b	T	A	2: 88,508,219 (GRCm39)	S7T	possibly damaging	Het
Or7g26	A	T	9: 19,230,612 (GRCm39)	S267C	probably damaging	Het
Or8g55	G	T	9: 39,784,707 (GRCm39)	M45I	probably benign	Het
Pex5l	T	C	3: 33,069,129 (GRCm39)	T123A	probably damaging	Het
Pip5kl1	A	T	2: 32,466,691 (GRCm39)	N62I	probably benign	Het
Pkhd1l1	T	C	15: 44,408,890 (GRCm39)	V2459A	probably damaging	Het
Prb1a	T	A	6: 132,184,439 (GRCm39)	Q398L	unknown	Het
Prkab2	T	C	3: 97,571,263 (GRCm39)	L165S	probably damaging	Het
Prl3d2	C	G	13: 27,305,689 (GRCm39)		probably benign	Het
Ptdss1	G	A	13: 67,143,472 (GRCm39)	G435D	probably benign	Het
Qrfpr	A	G	3: 36,236,729 (GRCm39)	L224P	probably damaging	Het
Rasl2-9	C	T	7: 5,128,441 (GRCm39)	W163*	probably null	Het
Rgs5	A	G	1: 169,517,983 (GRCm39)		probably null	Het
Rnf19b	T	C	4: 128,972,754 (GRCm39)	L255P	probably damaging	Het
Rp9	A	C	9: 22,368,751 (GRCm39)	N69K	probably damaging	Het
Sh3bp4	G	T	1: 89,073,210 (GRCm39)	S686I	probably damaging	Het
Shfl	AGAGGAGGAGGAGGAGGAGGAGGAGGA	AGAGGAGGAGGAGGAGGAGGAGGA	9: 20,785,013 (GRCm39)		probably benign	Het
Spp2	C	A	1: 88,340,015 (GRCm39)	Q5K	possibly damaging	Het
Svep1	C	T	4: 58,070,239 (GRCm39)	G2516R	probably damaging	Het
Syncrip	A	C	9: 88,361,949 (GRCm39)	S55R	probably damaging	Het
Tacc3	T	C	5: 33,818,652 (GRCm39)	L29P	probably damaging	Het
Tex15	A	G	8: 34,065,120 (GRCm39)	T1517A	probably damaging	Het
Tmem140	A	G	6: 34,849,660 (GRCm39)	M59V	probably benign	Het
Ttn	G	T	2: 76,575,872 (GRCm39)	A25007E	probably damaging	Het
Ubr2	T	C	17: 47,297,615 (GRCm39)	T253A	possibly damaging	Het
Unc80	C	T	1: 66,560,740 (GRCm39)	H823Y	possibly damaging	Het
Usp38	A	G	8: 81,722,399 (GRCm39)	L374P	probably damaging	Het
Vmn1r42	T	A	6: 89,822,483 (GRCm39)	I29L	probably benign	Het
Vmn2r94	C	T	17: 18,477,242 (GRCm39)	V390M	probably benign	Het
Vmp1	A	G	11: 86,552,026 (GRCm39)	Y113H	possibly damaging	Het
Wdr20	T	C	12: 110,760,464 (GRCm39)	M450T	probably benign	Het
Ylpm1	T	C	12: 85,061,770 (GRCm39)	V557A	unknown	Het
Zpld1	T	C	16: 55,053,935 (GRCm39)	N286D	probably damaging	Het

Other mutations in Chd1l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00433:Chd1l	APN	3	97,497,921 (GRCm39)	missense	probably damaging	1.00
IGL01349:Chd1l	APN	3	97,498,550 (GRCm39)	missense	probably benign	0.07
IGL02115:Chd1l	APN	3	97,497,220 (GRCm39)	critical splice donor site	probably null
IGL02418:Chd1l	APN	3	97,488,415 (GRCm39)	missense	probably benign	0.39
IGL02717:Chd1l	APN	3	97,491,223 (GRCm39)	missense	probably damaging	1.00
IGL03091:Chd1l	APN	3	97,470,863 (GRCm39)	missense	probably damaging	1.00
IGL03048:Chd1l	UTSW	3	97,505,079 (GRCm39)	missense	probably benign	0.01
R0125:Chd1l	UTSW	3	97,494,465 (GRCm39)	missense	probably benign	0.00
R0702:Chd1l	UTSW	3	97,474,110 (GRCm39)	missense	probably benign	0.05
R1226:Chd1l	UTSW	3	97,469,941 (GRCm39)	nonsense	probably null
R1237:Chd1l	UTSW	3	97,490,047 (GRCm39)	missense	probably benign	0.01
R1238:Chd1l	UTSW	3	97,490,047 (GRCm39)	missense	probably benign	0.01
R1239:Chd1l	UTSW	3	97,490,047 (GRCm39)	missense	probably benign	0.01
R1301:Chd1l	UTSW	3	97,510,964 (GRCm39)	splice site	probably benign
R1366:Chd1l	UTSW	3	97,488,465 (GRCm39)	missense	probably damaging	0.99
R1444:Chd1l	UTSW	3	97,490,047 (GRCm39)	missense	probably benign	0.01
R1445:Chd1l	UTSW	3	97,490,047 (GRCm39)	missense	probably benign	0.01
R1619:Chd1l	UTSW	3	97,490,047 (GRCm39)	missense	probably benign	0.01
R1640:Chd1l	UTSW	3	97,488,307 (GRCm39)	missense	probably benign	0.00
R1762:Chd1l	UTSW	3	97,495,615 (GRCm39)	missense	probably damaging	1.00
R2291:Chd1l	UTSW	3	97,498,599 (GRCm39)	missense	probably damaging	1.00
R2444:Chd1l	UTSW	3	97,497,882 (GRCm39)	missense	probably damaging	1.00
R4008:Chd1l	UTSW	3	97,477,718 (GRCm39)	missense	probably benign	0.01
R4011:Chd1l	UTSW	3	97,477,718 (GRCm39)	missense	probably benign	0.01
R4106:Chd1l	UTSW	3	97,505,019 (GRCm39)	missense	probably benign	0.09
R4857:Chd1l	UTSW	3	97,479,975 (GRCm39)	missense	probably benign	0.27
R5008:Chd1l	UTSW	3	97,491,224 (GRCm39)	missense	probably damaging	1.00
R5337:Chd1l	UTSW	3	97,469,932 (GRCm39)	missense	probably damaging	1.00
R5844:Chd1l	UTSW	3	97,479,883 (GRCm39)	missense	probably benign	0.04
R6283:Chd1l	UTSW	3	97,494,483 (GRCm39)	missense	probably damaging	1.00
R6298:Chd1l	UTSW	3	97,494,483 (GRCm39)	missense	probably damaging	1.00
R6309:Chd1l	UTSW	3	97,494,483 (GRCm39)	missense	probably damaging	1.00
R6311:Chd1l	UTSW	3	97,494,483 (GRCm39)	missense	probably damaging	1.00
R6321:Chd1l	UTSW	3	97,494,483 (GRCm39)	missense	probably damaging	1.00
R6327:Chd1l	UTSW	3	97,494,483 (GRCm39)	missense	probably damaging	1.00
R6364:Chd1l	UTSW	3	97,494,483 (GRCm39)	missense	probably damaging	1.00
R6366:Chd1l	UTSW	3	97,501,476 (GRCm39)	missense	probably benign	0.00
R6467:Chd1l	UTSW	3	97,470,849 (GRCm39)	missense	probably damaging	0.97
R6483:Chd1l	UTSW	3	97,494,483 (GRCm39)	missense	probably damaging	1.00
R6493:Chd1l	UTSW	3	97,494,483 (GRCm39)	missense	probably damaging	1.00
R6494:Chd1l	UTSW	3	97,494,483 (GRCm39)	missense	probably damaging	1.00
R6585:Chd1l	UTSW	3	97,505,088 (GRCm39)	missense	probably damaging	0.96
R6925:Chd1l	UTSW	3	97,490,142 (GRCm39)	missense	probably damaging	1.00
R7148:Chd1l	UTSW	3	97,498,632 (GRCm39)	missense	probably damaging	1.00
R7244:Chd1l	UTSW	3	97,505,066 (GRCm39)	missense	probably damaging	1.00
R8111:Chd1l	UTSW	3	97,494,526 (GRCm39)	missense	possibly damaging	0.95
R8346:Chd1l	UTSW	3	97,469,959 (GRCm39)	missense	probably benign	0.06
R8852:Chd1l	UTSW	3	97,477,685 (GRCm39)	missense	probably benign	0.00
R8860:Chd1l	UTSW	3	97,477,685 (GRCm39)	missense	probably benign	0.00
R9164:Chd1l	UTSW	3	97,501,356 (GRCm39)	missense	probably benign	0.00
R9612:Chd1l	UTSW	3	97,488,463 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- ATCAACGACTGATGAGGCGTGG -3'
(R):5'- GCACCTGAAAGGTTTTCCTTGGC -3'

Sequencing Primer
(F):5'- cacacgcacatgcacac -3'
(R):5'- CCTTGCCTGCACTATTTGGAAAAG -3'

Posted On

2014-04-13