Incidental Mutation 'R1549:Usp16'
ID 169804
Institutional Source Beutler Lab
Gene Symbol Usp16
Ensembl Gene ENSMUSG00000025616
Gene Name ubiquitin specific peptidase 16
Synonyms 2810483I07Rik, 6330514E22Rik, UBP-M, 1200004E02Rik
MMRRC Submission 039588-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R1549 (G1)
Quality Score 225
Status Validated
Chromosome 16
Chromosomal Location 87251833-87280403 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to T at 87261722 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Phenylalanine at position 113 (V113F)
Ref Sequence ENSEMBL: ENSMUSP00000116323 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000026710] [ENSMUST00000119504] [ENSMUST00000131356] [ENSMUST00000144759]
AlphaFold Q99LG0
Predicted Effect probably damaging
Transcript: ENSMUST00000026710
AA Change: V113F

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000026710
Gene: ENSMUSG00000025616
AA Change: V113F

DomainStartEndE-ValueType
Pfam:zf-UBP 48 127 2.5e-23 PFAM
coiled coil region 149 182 N/A INTRINSIC
Pfam:UCH 194 821 2e-54 PFAM
Pfam:UCH_1 195 800 3.8e-15 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000119504
AA Change: V113F

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000114058
Gene: ENSMUSG00000025616
AA Change: V113F

DomainStartEndE-ValueType
Pfam:zf-UBP 48 127 6.9e-24 PFAM
coiled coil region 149 181 N/A INTRINSIC
Pfam:UCH 193 732 1.2e-36 PFAM
Pfam:UCH_1 194 737 2.5e-12 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000131206
Predicted Effect probably benign
Transcript: ENSMUST00000131356
Predicted Effect probably damaging
Transcript: ENSMUST00000144759
AA Change: V113F

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000116323
Gene: ENSMUSG00000025616
AA Change: V113F

DomainStartEndE-ValueType
Pfam:zf-UBP 48 127 2e-24 PFAM
coiled coil region 149 181 N/A INTRINSIC
Pfam:UCH 193 330 2.4e-23 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000144886
Predicted Effect noncoding transcript
Transcript: ENSMUST00000177538
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.1%
  • 10x: 95.8%
  • 20x: 90.8%
Validation Efficiency 97% (58/60)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a deubiquitinating enzyme that is phosphorylated at the onset of mitosis and then dephosphorylated at the metaphase/anaphase transition. It can deubiquitinate H2A, one of two major ubiquitinated proteins of chromatin, in vitro and a mutant form of the protein was shown to block cell division. Alternate transcriptional splice variants, encoding different isoforms, have been characterized. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a transgenic gene disruption exhibit embryonic lethality at E6. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 51 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700006A11Rik A T 3: 124,210,441 (GRCm39) I157K probably benign Het
Ank3 A T 10: 69,837,812 (GRCm39) N727Y probably benign Het
Atg16l1 A G 1: 87,701,910 (GRCm39) T251A probably benign Het
Bcl11b T A 12: 107,883,422 (GRCm39) I226F probably damaging Het
Birc6 A G 17: 74,969,737 (GRCm39) H4260R probably damaging Het
Camta1 A G 4: 151,670,920 (GRCm39) I85T probably damaging Het
Cblb A G 16: 51,853,373 (GRCm39) probably benign Het
Ccnd1 T G 7: 144,491,073 (GRCm39) I178L probably benign Het
Clcn4 A G 7: 7,294,681 (GRCm39) V329A probably damaging Het
Col17a1 C T 19: 47,637,349 (GRCm39) probably benign Het
Col7a1 A G 9: 108,785,034 (GRCm39) T254A unknown Het
Ctif C A 18: 75,698,096 (GRCm39) R188L probably damaging Het
Cyp2c69 A T 19: 39,831,430 (GRCm39) L461Q probably benign Het
Ddc A G 11: 11,796,656 (GRCm39) probably null Het
Dpp10 T A 1: 123,269,109 (GRCm39) probably null Het
Eef2 CCC CCCC 10: 81,014,602 (GRCm39) probably null Het
Eif2b4 T C 5: 31,350,265 (GRCm39) E19G possibly damaging Het
Fmnl2 A G 2: 52,995,549 (GRCm39) E424G probably damaging Het
Galnt14 A G 17: 73,832,308 (GRCm39) L269P possibly damaging Het
Gm2381 T A 7: 42,471,825 (GRCm39) H18L probably benign Het
Gpbp1 G T 13: 111,573,113 (GRCm39) D326E probably benign Het
Gpr162 C T 6: 124,837,051 (GRCm39) R331H probably damaging Het
Iigp1 G A 18: 60,522,948 (GRCm39) G22D probably benign Het
Kcns3 T C 12: 11,142,084 (GRCm39) H205R probably damaging Het
Klk1b26 C T 7: 43,665,826 (GRCm39) probably benign Het
Lime1 A G 2: 181,025,169 (GRCm39) Y242C probably benign Het
Manba A G 3: 135,250,567 (GRCm39) D398G probably damaging Het
Mapk3 A T 7: 126,362,684 (GRCm39) K219* probably null Het
Mdfic G T 6: 15,799,844 (GRCm39) G324C probably damaging Het
Mdga1 G A 17: 30,056,972 (GRCm39) H837Y probably damaging Het
Nck1 T A 9: 100,379,925 (GRCm39) M109L probably benign Het
Or1d2 A G 11: 74,256,076 (GRCm39) I194V probably benign Het
Or2w1b T C 13: 21,300,288 (GRCm39) V142A probably benign Het
Pabpc1l G T 2: 163,879,091 (GRCm39) V313F possibly damaging Het
Phf3 C T 1: 30,843,923 (GRCm39) V1679I probably benign Het
Pou4f1 T C 14: 104,705,076 (GRCm39) I32V probably benign Het
Pspc1 T G 14: 56,986,398 (GRCm39) H351P probably damaging Het
Ptk7 T C 17: 46,883,578 (GRCm39) E829G probably damaging Het
Rab23 A G 1: 33,777,378 (GRCm39) Y164C possibly damaging Het
Slc36a3 A G 11: 55,033,596 (GRCm39) W141R probably damaging Het
Slc7a14 T C 3: 31,278,267 (GRCm39) E446G possibly damaging Het
Stim2 G A 5: 54,262,667 (GRCm39) R303Q probably damaging Het
Tbcd A G 11: 121,451,579 (GRCm39) I550V probably benign Het
Tmed3 A C 9: 89,581,998 (GRCm39) L155R probably damaging Het
Trav16d-dv11 A G 14: 53,284,799 (GRCm39) probably benign Het
Ubap2 C T 4: 41,199,872 (GRCm39) A752T probably benign Het
Vmn2r12 T G 5: 109,240,696 (GRCm39) Y139S probably benign Het
Vmn2r5 G T 3: 64,411,421 (GRCm39) D382E probably damaging Het
Zfp1010 T C 2: 176,957,378 (GRCm39) E40G probably damaging Het
Zfp217 A C 2: 169,956,390 (GRCm39) N869K probably benign Het
Zswim2 G T 2: 83,754,092 (GRCm39) D189E probably benign Het
Other mutations in Usp16
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01322:Usp16 APN 16 87,263,164 (GRCm39) missense possibly damaging 0.95
IGL01589:Usp16 APN 16 87,276,071 (GRCm39) missense probably benign 0.00
IGL02570:Usp16 APN 16 87,277,781 (GRCm39) missense probably damaging 1.00
IGL02736:Usp16 APN 16 87,261,723 (GRCm39) missense possibly damaging 0.75
IGL02973:Usp16 APN 16 87,276,627 (GRCm39) missense probably damaging 1.00
IGL03066:Usp16 APN 16 87,268,721 (GRCm39) missense probably damaging 1.00
PIT1430001:Usp16 UTSW 16 87,270,020 (GRCm39) missense probably damaging 0.99
R0395:Usp16 UTSW 16 87,272,334 (GRCm39) missense probably damaging 1.00
R0619:Usp16 UTSW 16 87,269,052 (GRCm39) missense probably benign 0.02
R1146:Usp16 UTSW 16 87,271,536 (GRCm39) missense possibly damaging 0.93
R1146:Usp16 UTSW 16 87,271,536 (GRCm39) missense possibly damaging 0.93
R1557:Usp16 UTSW 16 87,259,030 (GRCm39) critical splice donor site probably null
R1776:Usp16 UTSW 16 87,276,204 (GRCm39) missense probably damaging 0.97
R1818:Usp16 UTSW 16 87,276,020 (GRCm39) nonsense probably null
R1835:Usp16 UTSW 16 87,277,795 (GRCm39) missense probably damaging 1.00
R2022:Usp16 UTSW 16 87,270,014 (GRCm39) missense probably damaging 1.00
R2146:Usp16 UTSW 16 87,270,075 (GRCm39) critical splice donor site probably null
R2432:Usp16 UTSW 16 87,263,246 (GRCm39) critical splice donor site probably null
R3110:Usp16 UTSW 16 87,268,736 (GRCm39) splice site probably null
R3112:Usp16 UTSW 16 87,268,736 (GRCm39) splice site probably null
R3771:Usp16 UTSW 16 87,255,571 (GRCm39) start codon destroyed probably null 1.00
R4353:Usp16 UTSW 16 87,267,242 (GRCm39) missense probably damaging 1.00
R4959:Usp16 UTSW 16 87,277,802 (GRCm39) missense probably damaging 0.99
R4973:Usp16 UTSW 16 87,277,802 (GRCm39) missense probably damaging 0.99
R5276:Usp16 UTSW 16 87,267,339 (GRCm39) critical splice donor site probably null
R5753:Usp16 UTSW 16 87,279,787 (GRCm39) missense probably damaging 0.98
R6230:Usp16 UTSW 16 87,261,686 (GRCm39) missense possibly damaging 0.48
R6267:Usp16 UTSW 16 87,280,079 (GRCm39) missense probably benign 0.00
R6473:Usp16 UTSW 16 87,280,023 (GRCm39) missense probably benign 0.00
R6736:Usp16 UTSW 16 87,267,285 (GRCm39) missense probably damaging 1.00
R7006:Usp16 UTSW 16 87,268,724 (GRCm39) missense probably damaging 1.00
R7012:Usp16 UTSW 16 87,255,632 (GRCm39) critical splice donor site probably null
R7040:Usp16 UTSW 16 87,277,817 (GRCm39) missense probably damaging 1.00
R7136:Usp16 UTSW 16 87,280,059 (GRCm39) missense probably benign
R7295:Usp16 UTSW 16 87,268,977 (GRCm39) missense probably benign 0.44
R7434:Usp16 UTSW 16 87,276,207 (GRCm39) nonsense probably null
R7497:Usp16 UTSW 16 87,263,174 (GRCm39) nonsense probably null
R7571:Usp16 UTSW 16 87,261,723 (GRCm39) missense possibly damaging 0.75
R7576:Usp16 UTSW 16 87,276,188 (GRCm39) missense probably benign 0.34
R7624:Usp16 UTSW 16 87,273,693 (GRCm39) missense probably benign 0.23
R7889:Usp16 UTSW 16 87,271,472 (GRCm39) missense probably benign 0.44
R8499:Usp16 UTSW 16 87,271,536 (GRCm39) missense possibly damaging 0.93
R8779:Usp16 UTSW 16 87,276,297 (GRCm39) missense probably benign 0.00
R9182:Usp16 UTSW 16 87,276,542 (GRCm39) missense probably benign 0.00
R9251:Usp16 UTSW 16 87,266,640 (GRCm39) missense probably benign 0.08
R9367:Usp16 UTSW 16 87,261,669 (GRCm39) missense probably benign 0.01
R9707:Usp16 UTSW 16 87,263,235 (GRCm39) missense probably benign
R9746:Usp16 UTSW 16 87,276,120 (GRCm39) missense probably benign 0.00
X0061:Usp16 UTSW 16 87,276,345 (GRCm39) missense probably benign 0.01
X0064:Usp16 UTSW 16 87,268,613 (GRCm39) missense probably damaging 0.97
Predicted Primers PCR Primer
(F):5'- ATCATGCCCAGATGTGCCACAG -3'
(R):5'- AAGACACAGGAGGTGCTAGTTCCC -3'

Sequencing Primer
(F):5'- AATATGCTCTCTCTAGTAGGTGC -3'
(R):5'- GTGCTAGTTCCCACGCC -3'
Posted On 2014-04-13