Mutagenetix > Incidental Mutations

Incidental Mutation 'R1558:Ddx1'

170438

Institutional Source

Beutler Lab

Gene Symbol

Ddx1

Ensembl Gene

ENSMUSG00000037149

Gene Name

DEAD (Asp-Glu-Ala-Asp) box polypeptide 1

Synonyms

MMRRC Submission

039597-MU

Accession Numbers

Is this an essential gene?

Essential (E-score: 1.000) question?

Stock #

R1558 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

13216973-13249213 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 13239541 bp

Zygosity

Heterozygous

Amino Acid Change

Glycine to Serine at position 125 (G125S)

Ref Sequence

ENSEMBL: ENSMUSP00000152513 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000071103] [ENSMUST00000221623]

Predicted Effect

probably damaging
Transcript: ENSMUST00000071103
AA Change: G168S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000065987
Gene: ENSMUSG00000037149
AA Change: G168S

Domain	Start	End	E-Value	Type
DEXDc	21	444	1.95e-47	SMART
SPRY	130	246	1.91e-34	SMART
HELICc	520	610	8.28e-28	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000221623
AA Change: G125S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Coding Region Coverage

1x: 99.0%
3x: 98.0%
10x: 95.5%
20x: 90.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. This gene encodes a DEAD box protein of unknown function. It shows high transcription levels in 2 retinoblastoma cell lines and in tissues of neuroectodermal origin. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921501E09Rik	T	A	17: 33,065,705	I708F	probably benign	Het
4933406M09Rik	G	A	1: 134,390,774	G428D	probably damaging	Het
Abca1	T	A	4: 53,092,887	Q299L	probably null	Het
Adamts9	T	G	6: 92,908,711	K399N	possibly damaging	Het
Alox12b	T	C	11: 69,165,885	F369S	probably damaging	Het
Alpk2	A	G	18: 65,350,230	Y236H	probably benign	Het
Ankrd36	T	C	11: 5,635,329	L380P	probably damaging	Het
Atp2a1	C	T	7: 126,452,672	A468T	possibly damaging	Het
Caprin1	A	T	2: 103,775,987	F303I	possibly damaging	Het
Casp7	A	T	19: 56,433,252	R41*	probably null	Het
Ccdc66	T	A	14: 27,486,506	H753L	probably benign	Het
Ccnc	T	C	4: 21,742,671	M166T	probably benign	Het
Cdkl3	T	A	11: 52,032,510	M538K	possibly damaging	Het
Cercam	G	A	2: 29,876,239	A345T	probably benign	Het
Chmp3	T	A	6: 71,560,970	C60*	probably null	Het
Defb7	A	G	8: 19,497,551	D24G	probably benign	Het
Dgcr8	A	T	16: 18,259,588	Y653N	probably damaging	Het
Dsc2	T	C	18: 20,050,151	D70G	probably damaging	Het
Erich3	T	G	3: 154,714,068	N266K	probably damaging	Het
Fastk	A	T	5: 24,444,047		probably null	Het
Fat4	A	G	3: 38,888,986	N676S	probably damaging	Het
Fermt1	A	T	2: 132,934,819		probably null	Het
Fmn1	A	G	2: 113,693,118	T1149A	possibly damaging	Het
Foxo3	A	G	10: 42,197,072	V483A	probably damaging	Het
Fpgs	T	C	2: 32,685,840	T364A	possibly damaging	Het
Gm12185	A	G	11: 48,915,435	S310P	probably damaging	Het
Gm15056	A	T	8: 20,901,933		probably benign	Het
Hcn1	T	C	13: 117,975,576	V692A	unknown	Het
Izumo3	A	C	4: 92,146,903	C26G	probably damaging	Het
Kcnf1	T	C	12: 17,175,473	Y249C	probably damaging	Het
Kcnj6	T	C	16: 94,762,499	E380G	possibly damaging	Het
Kdm3b	A	G	18: 34,809,096	T747A	probably damaging	Het
Lrba	G	A	3: 86,351,315	G1370R	probably damaging	Het
Mei1	G	A	15: 82,107,133	R504Q	probably damaging	Het
Mipol1	T	C	12: 57,332,341	I195T	probably damaging	Het
Mum1	G	T	10: 80,232,944	R307S	probably benign	Het
Ncor2	G	A	5: 125,033,546	T1350I	probably damaging	Het
Npy	A	G	6: 49,823,725	E43G	probably damaging	Het
Olfr1152	T	A	2: 87,868,115	N41K	probably damaging	Het
Olfr1507	T	A	14: 52,490,146	I273F	probably benign	Het
Olfr924	T	A	9: 38,848,904	N263K	probably benign	Het
Pcdhb3	T	C	18: 37,301,581	L200P	probably damaging	Het
Pcnt	G	A	10: 76,422,922	H570Y	possibly damaging	Het
Pkd1l2	A	C	8: 117,082,252	D66E	possibly damaging	Het
Plekhg4	A	G	8: 105,381,835	D1170G	possibly damaging	Het
Poln	T	A	5: 34,032,799	H672L	probably benign	Het
Pqlc2	A	T	4: 139,300,080		probably benign	Het
Ptprq	T	C	10: 107,644,043	Y1122C	probably damaging	Het
Ptrhd1	A	G	12: 4,236,505	Y132C	probably damaging	Het
Riok1	G	T	13: 38,050,855	R300L	probably damaging	Het
Sbf2	G	T	7: 110,428,346	T481K	probably damaging	Het
Sidt2	A	T	9: 45,951,800	M11K	probably damaging	Het
Syne1	G	A	10: 5,349,280	R992*	probably null	Het
Tmem2	T	A	19: 21,797,982	Y196*	probably null	Het
Tmem8b	C	A	4: 43,681,134	R384S	possibly damaging	Het
Trim28	T	C	7: 13,027,834	Y243H	probably damaging	Het
Trpm6	T	C	19: 18,786,828	M266T	probably benign	Het
Tsg101	A	T	7: 46,889,689	S368T	probably damaging	Het
Ttc28	G	A	5: 111,225,677	S962N	probably damaging	Het
Ttc6	G	A	12: 57,686,346	V1092I	probably benign	Het
Vps13b	C	T	15: 35,534,319	T927I	probably damaging	Het
Zfr	C	T	15: 12,140,644	T259I	unknown	Het

Other mutations in Ddx1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00725:Ddx1	APN	12	13227459	splice site	probably benign
IGL00725:Ddx1	APN	12	13245690	missense	probably damaging	1.00
IGL00958:Ddx1	APN	12	13240848	splice site	probably null
IGL01786:Ddx1	APN	12	13229136	missense	probably benign
IGL02832:Ddx1	APN	12	13227317	nonsense	probably null
IGL02983:Ddx1	APN	12	13223862	missense	probably damaging	1.00
R0201:Ddx1	UTSW	12	13223808	missense	probably damaging	1.00
R0931:Ddx1	UTSW	12	13237817	splice site	probably benign
R1434:Ddx1	UTSW	12	13237231	missense	probably benign	0.01
R1673:Ddx1	UTSW	12	13244966	critical splice donor site	probably null
R1854:Ddx1	UTSW	12	13229331	missense	probably benign	0.19
R2910:Ddx1	UTSW	12	13231440	splice site	probably null
R2911:Ddx1	UTSW	12	13231440	splice site	probably null
R4181:Ddx1	UTSW	12	13231503	nonsense	probably null
R4182:Ddx1	UTSW	12	13231503	nonsense	probably null
R4183:Ddx1	UTSW	12	13231503	nonsense	probably null
R4231:Ddx1	UTSW	12	13223857	missense	possibly damaging	0.74
R4234:Ddx1	UTSW	12	13223857	missense	possibly damaging	0.74
R4235:Ddx1	UTSW	12	13223857	missense	possibly damaging	0.74
R4243:Ddx1	UTSW	12	13240909	nonsense	probably null
R4717:Ddx1	UTSW	12	13240887	missense	probably damaging	1.00
R4821:Ddx1	UTSW	12	13239147	missense	probably damaging	1.00
R5032:Ddx1	UTSW	12	13223992	missense	probably damaging	1.00
R5082:Ddx1	UTSW	12	13220435	nonsense	probably null
R5528:Ddx1	UTSW	12	13229294	missense	probably damaging	1.00
R5997:Ddx1	UTSW	12	13237799	missense	probably damaging	1.00
R6398:Ddx1	UTSW	12	13245720	missense	probably damaging	1.00
R6891:Ddx1	UTSW	12	13236095	missense	probably benign	0.25
R7085:Ddx1	UTSW	12	13229355	missense	probably damaging	1.00
R7125:Ddx1	UTSW	12	13243863	missense	probably benign	0.18
R7307:Ddx1	UTSW	12	13223959	missense	probably damaging	1.00
R7388:Ddx1	UTSW	12	13225455	missense	probably null	1.00
R7393:Ddx1	UTSW	12	13230353	missense	probably benign	0.03
R7460:Ddx1	UTSW	12	13231439	splice site	probably null
X0011:Ddx1	UTSW	12	13229415	missense	probably damaging	1.00
X0028:Ddx1	UTSW	12	13243866	missense	probably benign	0.00
Z1177:Ddx1	UTSW	12	13229259	missense	probably damaging	0.96

Predicted Primers

PCR Primer
(F):5'- AGGACCAAAAGCAGACACTGGTATTTC -3'
(R):5'- GCCACTTGTGTCCATGCTATTGCG -3'

Sequencing Primer
(F):5'- gctcctgtaatcccagcac -3'
(R):5'- GTATTTGGTATAGATTGACAGTGCCC -3'

Posted On

2014-04-13