Incidental Mutation 'R0097:Ccnd2'
ID 17057
Institutional Source Beutler Lab
Gene Symbol Ccnd2
Ensembl Gene ENSMUSG00000000184
Gene Name cyclin D2
Synonyms 2600016F06Rik, Vin1, Vin-1, cD2
MMRRC Submission 038383-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R0097 (G1)
Quality Score
Status Validated
Chromosome 6
Chromosomal Location 127102125-127129156 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to A at 127123015 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Alanine to Valine at position 180 (A180V)
Ref Sequence ENSEMBL: ENSMUSP00000144006 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000000188] [ENSMUST00000201066] [ENSMUST00000201637] [ENSMUST00000201902]
AlphaFold P30280
Predicted Effect probably benign
Transcript: ENSMUST00000000188
AA Change: A180V

PolyPhen 2 Score 0.019 (Sensitivity: 0.95; Specificity: 0.80)
SMART Domains Protein: ENSMUSP00000000188
Gene: ENSMUSG00000000184
AA Change: A180V

DomainStartEndE-ValueType
CYCLIN 60 144 3.8e-20 SMART
Cyclin_C 153 275 1.19e-18 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000180569
Predicted Effect noncoding transcript
Transcript: ENSMUST00000180811
Predicted Effect probably benign
Transcript: ENSMUST00000201066
SMART Domains Protein: ENSMUSP00000144095
Gene: ENSMUSG00000000184

DomainStartEndE-ValueType
CYCLIN 60 139 3.06e-15 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000201637
SMART Domains Protein: ENSMUSP00000144245
Gene: ENSMUSG00000000184

DomainStartEndE-ValueType
CYCLIN 60 139 3.06e-15 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000201857
Predicted Effect probably benign
Transcript: ENSMUST00000201902
AA Change: A180V

PolyPhen 2 Score 0.285 (Sensitivity: 0.91; Specificity: 0.88)
SMART Domains Protein: ENSMUSP00000144006
Gene: ENSMUSG00000000184
AA Change: A180V

DomainStartEndE-ValueType
CYCLIN 60 144 2.4e-22 SMART
Blast:CYCLIN 157 189 5e-7 BLAST
Predicted Effect noncoding transcript
Transcript: ENSMUST00000202363
Predicted Effect noncoding transcript
Transcript: ENSMUST00000201985
Meta Mutation Damage Score 0.3598 question?
Coding Region Coverage
  • 1x: 89.4%
  • 3x: 86.4%
  • 10x: 78.0%
  • 20x: 64.9%
Validation Efficiency 86% (56/65)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the highly conserved cyclin family, whose members are characterized by a dramatic periodicity in protein abundance through the cell cycle. Cyclins function as regulators of CDK kinases. Different cyclins exhibit distinct expression and degradation patterns which contribute to the temporal coordination of each mitotic event. This cyclin forms a complex with CDK4 or CDK6 and functions as a regulatory subunit of the complex, whose activity is required for cell cycle G1/S transition. This protein has been shown to interact with and be involved in the phosphorylation of tumor suppressor protein Rb. Knockout studies of the homologous gene in mouse suggest the essential roles of this gene in ovarian granulosa and germ cell proliferation. High level expression of this gene was observed in ovarian and testicular tumors. Mutations in this gene are associated with megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 3 (MPPH3). [provided by RefSeq, Sep 2014]
PHENOTYPE: Homozygotes for a targeted null mutation are sterile: females lack a granulosa cell response to follicle stimulating hormone, while males have hypoplastic testes. Mutants also show decreased cerebellar granule cell and stellate neuron populations. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 36 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700006A11Rik A T 3: 124,206,129 (GRCm39) I353K probably benign Het
Albfm1 T A 5: 90,732,795 (GRCm39) S535R probably benign Het
Arfgap2 T A 2: 91,105,160 (GRCm39) V422E probably benign Het
Baz1b T C 5: 135,227,113 (GRCm39) S105P probably benign Het
Cacna1s T A 1: 136,028,360 (GRCm39) M899K possibly damaging Het
Ciao3 T C 17: 25,995,976 (GRCm39) S67P possibly damaging Het
Dmrta1 A T 4: 89,577,109 (GRCm39) R188S probably benign Het
Eml3 T A 19: 8,914,015 (GRCm39) F465L probably benign Het
Gm9938 T A 19: 23,701,828 (GRCm39) probably benign Het
Gpr87 G A 3: 59,086,506 (GRCm39) T333I probably damaging Het
Lzic A G 4: 149,572,533 (GRCm39) E41G probably damaging Het
Mprip T A 11: 59,649,317 (GRCm39) L1007Q possibly damaging Het
Mtfr2 T A 10: 20,224,122 (GRCm39) S19T probably damaging Het
Mycbp2 A T 14: 103,393,198 (GRCm39) M3121K probably damaging Het
Myocd T A 11: 65,069,840 (GRCm39) M667L possibly damaging Het
Neb T C 2: 52,094,906 (GRCm39) N4882S probably damaging Het
Neo1 T C 9: 58,882,021 (GRCm38) probably benign Het
Neu2 A G 1: 87,525,188 (GRCm39) D391G probably benign Het
Nol4 C A 18: 22,852,198 (GRCm39) A456S probably benign Het
Or5m13 T C 2: 85,749,184 (GRCm39) V305A probably benign Het
Padi6 C T 4: 140,458,268 (GRCm39) V513M probably benign Het
Prss38 A G 11: 59,266,434 (GRCm39) L8S possibly damaging Het
Rab5b A T 10: 128,518,809 (GRCm39) F108I probably damaging Het
Ryr3 T C 2: 112,630,400 (GRCm39) D2157G probably damaging Het
Secisbp2l T C 2: 125,613,376 (GRCm39) D206G probably damaging Het
Sh3pxd2b T A 11: 32,353,978 (GRCm39) I182N probably damaging Het
Slc3a1 A T 17: 85,340,288 (GRCm39) I237F probably damaging Het
St6galnac6 T C 2: 32,489,814 (GRCm39) L8P probably damaging Het
T A T 17: 8,658,733 (GRCm39) probably benign Het
Tenm4 A T 7: 96,542,133 (GRCm39) D1882V probably damaging Het
Tgfbr1 T A 4: 47,403,451 (GRCm39) L283* probably null Het
Ubp1 T C 9: 113,802,575 (GRCm39) probably benign Het
Ushbp1 C T 8: 71,843,357 (GRCm39) C314Y probably damaging Het
Vav2 A T 2: 27,189,374 (GRCm39) probably benign Het
Vmn1r228 T C 17: 20,996,625 (GRCm39) M298V probably benign Het
Zmpste24 A T 4: 120,952,740 (GRCm39) probably benign Het
Other mutations in Ccnd2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02655:Ccnd2 APN 6 127,125,733 (GRCm39) missense probably damaging 1.00
IGL03030:Ccnd2 APN 6 127,125,841 (GRCm39) missense probably damaging 1.00
mirage UTSW 6 127,123,015 (GRCm39) missense probably benign 0.28
Phantasm UTSW 6 127,127,549 (GRCm39) missense probably damaging 1.00
R0097:Ccnd2 UTSW 6 127,123,015 (GRCm39) missense probably benign 0.28
R1231:Ccnd2 UTSW 6 127,107,363 (GRCm39) missense probably benign 0.00
R1556:Ccnd2 UTSW 6 127,107,363 (GRCm39) missense probably benign 0.00
R3931:Ccnd2 UTSW 6 127,107,422 (GRCm39) missense probably damaging 1.00
R4785:Ccnd2 UTSW 6 127,125,761 (GRCm39) missense possibly damaging 0.67
R5425:Ccnd2 UTSW 6 127,127,580 (GRCm39) missense probably benign 0.00
R7295:Ccnd2 UTSW 6 127,125,725 (GRCm39) missense possibly damaging 0.81
R8232:Ccnd2 UTSW 6 127,127,549 (GRCm39) missense probably damaging 1.00
R8235:Ccnd2 UTSW 6 127,107,305 (GRCm39) missense probably benign 0.00
R9155:Ccnd2 UTSW 6 127,127,663 (GRCm39) missense probably damaging 0.97
R9439:Ccnd2 UTSW 6 127,127,617 (GRCm39) nonsense probably null
Posted On 2013-01-20