Incidental Mutation 'R1581:Pradc1'
ID 171394
Institutional Source Beutler Lab
Gene Symbol Pradc1
Ensembl Gene ENSMUSG00000030008
Gene Name protease-associated domain containing 1
Synonyms 1700040I03Rik
MMRRC Submission 039618-MU
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.262) question?
Stock # R1581 (G1)
Quality Score 225
Status Not validated
Chromosome 6
Chromosomal Location 85423792-85428952 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to A at 85425568 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Arginine to Cysteine at position 25 (R25C)
Ref Sequence ENSEMBL: ENSMUSP00000109400 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000032078] [ENSMUST00000032080] [ENSMUST00000045693] [ENSMUST00000113770] [ENSMUST00000126805] [ENSMUST00000204489] [ENSMUST00000204592]
AlphaFold Q9D9N8
Predicted Effect probably benign
Transcript: ENSMUST00000032078
SMART Domains Protein: ENSMUSP00000032078
Gene: ENSMUSG00000030007

DomainStartEndE-ValueType
Pfam:Cpn60_TCP1 32 524 1.8e-163 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000032080
AA Change: R25C

PolyPhen 2 Score 0.806 (Sensitivity: 0.84; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000032080
Gene: ENSMUSG00000030008
AA Change: R25C

DomainStartEndE-ValueType
signal peptide 1 21 N/A INTRINSIC
Pfam:PA 61 154 4.9e-13 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000045693
SMART Domains Protein: ENSMUSP00000048537
Gene: ENSMUSG00000033706

DomainStartEndE-ValueType
SET 21 357 8.15e-14 SMART
low complexity region 392 412 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000113770
AA Change: R25C

PolyPhen 2 Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000109400
Gene: ENSMUSG00000030008
AA Change: R25C

DomainStartEndE-ValueType
signal peptide 1 21 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000122907
Predicted Effect probably benign
Transcript: ENSMUST00000126805
SMART Domains Protein: ENSMUSP00000145290
Gene: ENSMUSG00000030008

DomainStartEndE-ValueType
SCOP:d1a9xa2 20 54 9e-3 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000146086
Predicted Effect noncoding transcript
Transcript: ENSMUST00000153749
Predicted Effect noncoding transcript
Transcript: ENSMUST00000154918
Predicted Effect probably benign
Transcript: ENSMUST00000204489
SMART Domains Protein: ENSMUSP00000144919
Gene: ENSMUSG00000030007

DomainStartEndE-ValueType
PDB:4B2T|H 1 53 2e-29 PDB
Blast:VWA 5 51 4e-7 BLAST
SCOP:d1a6da1 16 51 2e-8 SMART
low complexity region 68 80 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000205094
Predicted Effect noncoding transcript
Transcript: ENSMUST00000203934
Predicted Effect noncoding transcript
Transcript: ENSMUST00000156322
Predicted Effect noncoding transcript
Transcript: ENSMUST00000134405
Predicted Effect noncoding transcript
Transcript: ENSMUST00000139875
Predicted Effect noncoding transcript
Transcript: ENSMUST00000130928
Predicted Effect probably benign
Transcript: ENSMUST00000204592
SMART Domains Protein: ENSMUSP00000144893
Gene: ENSMUSG00000030007

DomainStartEndE-ValueType
Pfam:Cpn60_TCP1 32 91 6e-21 PFAM
Pfam:Cpn60_TCP1 88 482 5e-115 PFAM
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.2%
  • 10x: 96.2%
  • 20x: 92.6%
Validation Efficiency
MGI Phenotype PHENOTYPE: Phenotypic analysis of mice homozygous for a gene trap allele indicates this mutation results in increased mean serum glucose levels in both males and females when compared with controls. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 66 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcd2 T C 15: 91,063,347 (GRCm39) E447G probably benign Het
Actn4 T C 7: 28,598,071 (GRCm39) T510A probably benign Het
Adgrb3 A G 1: 25,133,153 (GRCm39) M1311T possibly damaging Het
Arfgef1 C T 1: 10,270,103 (GRCm39) A349T probably benign Het
Auh G A 13: 52,989,532 (GRCm39) P308L probably benign Het
Bicdl1 G T 5: 115,789,326 (GRCm39) probably benign Het
Bmyc T C 2: 25,597,346 (GRCm39) S137P probably damaging Het
Camsap3 C T 8: 3,654,708 (GRCm39) R782C probably damaging Het
Casc3 C T 11: 98,713,644 (GRCm39) T292I possibly damaging Het
Chmp7 C T 14: 69,956,899 (GRCm39) M336I probably benign Het
Cibar1 T A 4: 12,155,745 (GRCm39) probably null Het
Cnnm2 A G 19: 46,751,562 (GRCm39) T451A probably damaging Het
Eed T C 7: 89,629,676 (GRCm39) K20E possibly damaging Het
Eps15 T A 4: 109,220,383 (GRCm39) M180K probably benign Het
Esr1 T C 10: 4,947,905 (GRCm39) I486T probably damaging Het
Etnppl A G 3: 130,422,393 (GRCm39) I207V possibly damaging Het
Fancg G A 4: 43,007,039 (GRCm39) P246L probably damaging Het
Fcrl1 G A 3: 87,293,030 (GRCm39) C249Y possibly damaging Het
Foxred2 A G 15: 77,839,961 (GRCm39) F110L possibly damaging Het
Fsip2 A T 2: 82,816,626 (GRCm39) N4120Y probably damaging Het
Gm4884 C T 7: 40,693,255 (GRCm39) S408L probably benign Het
Gm9476 T C 10: 100,142,474 (GRCm39) noncoding transcript Het
Gria1 T C 11: 57,127,836 (GRCm39) probably null Het
H6pd T A 4: 150,066,971 (GRCm39) I472F possibly damaging Het
Hydin A T 8: 111,137,092 (GRCm39) M632L probably benign Het
Hyou1 C T 9: 44,300,167 (GRCm39) P819S probably damaging Het
Il6st A G 13: 112,618,075 (GRCm39) E163G probably damaging Het
Kcnk1 T C 8: 126,722,278 (GRCm39) V27A possibly damaging Het
Kdelr3 T C 15: 79,407,114 (GRCm39) probably null Het
Klk1b22 A G 7: 43,765,399 (GRCm39) N117S possibly damaging Het
Klrh1 T C 6: 129,752,796 (GRCm39) D3G probably benign Het
Lpp C A 16: 24,500,591 (GRCm39) C134* probably null Het
Lrrc37a G A 11: 103,347,843 (GRCm39) R2951* probably null Het
Luzp2 T A 7: 54,899,238 (GRCm39) D285E possibly damaging Het
Ly75 C T 2: 60,158,237 (GRCm39) R1016H probably damaging Het
Mesp2 T A 7: 79,462,289 (GRCm39) S282T possibly damaging Het
Nav3 T C 10: 109,659,289 (GRCm39) D776G probably damaging Het
Nr2e1 T C 10: 42,443,964 (GRCm39) T253A probably benign Het
Nup214 C T 2: 31,924,478 (GRCm39) S1669F probably damaging Het
Or1r1 A T 11: 73,875,347 (GRCm39) L29H probably damaging Het
Padi6 T C 4: 140,463,147 (GRCm39) Y146C probably damaging Het
Pank4 C T 4: 155,059,108 (GRCm39) R414W probably damaging Het
Pclo T G 5: 14,571,296 (GRCm39) I227S probably benign Het
Plppr4 A G 3: 117,121,915 (GRCm39) V221A possibly damaging Het
Rfwd3 C T 8: 112,014,874 (GRCm39) R326Q probably damaging Het
Rnd2 A G 11: 101,362,022 (GRCm39) T192A probably benign Het
Rtbdn A G 8: 85,681,695 (GRCm39) E131G probably benign Het
Ryr2 A G 13: 11,809,449 (GRCm39) V792A probably benign Het
Sacs G T 14: 61,451,128 (GRCm39) Q4391H probably damaging Het
Scd2 A G 19: 44,286,538 (GRCm39) S123G probably benign Het
Septin9 A G 11: 117,181,421 (GRCm39) R74G probably damaging Het
Sipa1l2 T A 8: 126,218,356 (GRCm39) Q327L probably damaging Het
Skor1 T C 9: 63,053,505 (GRCm39) T127A probably damaging Het
Sphk2 A G 7: 45,362,920 (GRCm39) V57A probably damaging Het
Tfec A T 6: 16,844,243 (GRCm39) D101E probably damaging Het
Tmem43 T A 6: 91,455,717 (GRCm39) H109Q probably benign Het
Tmem67 C A 4: 12,047,814 (GRCm39) S839I probably damaging Het
Trpv5 T C 6: 41,630,074 (GRCm39) Y672C probably damaging Het
Ttc39d A C 17: 80,523,913 (GRCm39) S191R probably benign Het
Ttll1 C T 15: 83,380,478 (GRCm39) V296M probably damaging Het
Upp2 A C 2: 58,664,177 (GRCm39) K130T possibly damaging Het
Vmn2r5 A G 3: 64,398,640 (GRCm39) C780R probably damaging Het
Wars1 C A 12: 108,841,635 (GRCm39) E171* probably null Het
Zeb2 A T 2: 44,887,012 (GRCm39) S637T probably damaging Het
Zfp27 T A 7: 29,595,549 (GRCm39) T139S possibly damaging Het
Zfp941 A T 7: 140,392,033 (GRCm39) L442Q probably benign Het
Other mutations in Pradc1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00496:Pradc1 APN 6 85,424,948 (GRCm39) splice site probably null
R0010:Pradc1 UTSW 6 85,424,602 (GRCm39) missense probably damaging 1.00
R0010:Pradc1 UTSW 6 85,424,213 (GRCm39) missense probably damaging 1.00
R1758:Pradc1 UTSW 6 85,424,203 (GRCm39) missense possibly damaging 0.84
R4630:Pradc1 UTSW 6 85,424,275 (GRCm39) missense possibly damaging 0.94
R4791:Pradc1 UTSW 6 85,424,173 (GRCm39) missense probably damaging 1.00
R7269:Pradc1 UTSW 6 85,424,548 (GRCm39) missense probably benign 0.03
R7922:Pradc1 UTSW 6 85,424,950 (GRCm39) missense probably benign 0.32
R9709:Pradc1 UTSW 6 85,424,952 (GRCm39) missense probably benign 0.32
Predicted Primers PCR Primer
(F):5'- TGCCCTGTTCCAGCATAAAAGTGG -3'
(R):5'- TTCCAGTGCAGAAACCAGCTCTCC -3'

Sequencing Primer
(F):5'- GGGAAGAGGGCCACCATAC -3'
(R):5'- gcccaccaaggaaacaaaac -3'
Posted On 2014-04-13