Mutagenetix > Incidental Mutation

Incidental Mutation 'R0062:Gtf3c5'

17298

Institutional Source

Beutler Lab

Gene Symbol

Gtf3c5

Ensembl Gene

ENSMUSG00000026816

Gene Name

general transcription factor IIIC, polypeptide 5

Synonyms

TFIIICepsilon, TFiiiC2-63, TFIIIC63, 2700084A09Rik

MMRRC Submission

038354-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R0062 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

28456257-28473291 bp(-) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

T to C at 28462198 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000109521 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028157] [ENSMUST00000113889]

AlphaFold

Q8R2T8

Predicted Effect

probably benign
Transcript: ENSMUST00000028157

SMART Domains

Protein: ENSMUSP00000028157
Gene: ENSMUSG00000026816

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
Pfam:Tau95	23	322	2.8e-71	PFAM
coiled coil region	471	494	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000113889

SMART Domains

Protein: ENSMUSP00000109521
Gene: ENSMUSG00000026816

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
Pfam:Tau95	24	322	1.7e-85	PFAM
coiled coil region	477	500	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000131370

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000139580

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000142054

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000177012

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 90.3%
3x: 88.1%
10x: 83.4%
20x: 77.5%

Validation Efficiency

91% (72/79)

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921513I03Rik	G	T	10: 120,614,511 (GRCm39)		probably benign	Het
Abi2	T	A	1: 60,492,884 (GRCm39)	N182K	probably benign	Het
Adam25	A	T	8: 41,207,829 (GRCm39)	H365L	probably damaging	Het
Ankfy1	T	A	11: 72,603,030 (GRCm39)	Y20N	probably damaging	Het
Arhgef28	A	T	13: 98,093,150 (GRCm39)	I977N	possibly damaging	Het
Cacna1b	A	G	2: 24,648,343 (GRCm39)	Y161H	probably damaging	Het
Cacna1c	T	C	6: 118,579,198 (GRCm39)	D1480G	probably damaging	Het
Chl1	A	T	6: 103,726,613 (GRCm39)	Y1143F	unknown	Het
Clk3	A	G	9: 57,659,449 (GRCm39)	M533T	probably damaging	Het
Clstn1	G	A	4: 149,719,253 (GRCm39)	V361M	probably damaging	Het
Cnbd1	A	G	4: 18,860,504 (GRCm39)	I414T	possibly damaging	Het
Commd3	A	T	2: 18,679,514 (GRCm39)		probably null	Het
Dnah8	T	A	17: 30,984,685 (GRCm39)	F3128I	probably damaging	Het
Dock1	A	G	7: 134,379,224 (GRCm39)		probably null	Het
Dpysl3	C	T	18: 43,466,941 (GRCm39)		probably null	Het
Ebf2	T	A	14: 67,475,989 (GRCm39)		probably benign	Het
F830045P16Rik	T	C	2: 129,305,624 (GRCm39)	E250G	possibly damaging	Het
Fmn2	A	T	1: 174,436,015 (GRCm39)		probably benign	Het
Fryl	T	C	5: 73,179,621 (GRCm39)	I2929V	probably benign	Het
Gm11232	T	A	4: 71,675,112 (GRCm39)	Q130L	possibly damaging	Het
Gna15	A	G	10: 81,348,239 (GRCm39)		probably null	Het
Irs2	G	A	8: 11,055,723 (GRCm39)	T903I	possibly damaging	Het
Itga2	G	A	13: 115,007,032 (GRCm39)	S432L	possibly damaging	Het
Izumo1	A	G	7: 45,276,621 (GRCm39)	T395A	probably benign	Het
Kcnd2	G	A	6: 21,727,225 (GRCm39)	V593M	possibly damaging	Het
Kprp	T	C	3: 92,731,989 (GRCm39)	S354G	probably damaging	Het
Krt72	T	C	15: 101,694,443 (GRCm39)	K151E	probably damaging	Het
Letm2	A	T	8: 26,077,464 (GRCm39)		probably benign	Het
Lipe	A	G	7: 25,097,874 (GRCm39)	V23A	possibly damaging	Het
Mcc	C	G	18: 44,652,583 (GRCm39)		probably benign	Het
Mthfd1	G	A	12: 76,344,363 (GRCm39)		probably benign	Het
Nbeal1	C	A	1: 60,286,876 (GRCm39)	N899K	probably benign	Het
Odad2	T	A	18: 7,129,593 (GRCm39)		probably benign	Het
Or10ak14	T	C	4: 118,611,100 (GRCm39)	I212V	probably benign	Het
Or4c118	T	C	2: 88,974,966 (GRCm39)	I134V	possibly damaging	Het
Pcdha1	T	A	18: 37,139,681 (GRCm39)	W437R	probably benign	Het
Pcdhga11	T	G	18: 37,941,528 (GRCm39)	I643S	probably benign	Het
Pik3r6	T	A	11: 68,419,635 (GRCm39)	Y149N	probably damaging	Het
Pja2	C	A	17: 64,615,966 (GRCm39)	V310L	probably damaging	Het
Ripor3	A	G	2: 167,826,358 (GRCm39)		probably benign	Het
Rpa2	C	A	4: 132,505,125 (GRCm39)	N251K	probably damaging	Het
Rttn	T	C	18: 89,029,090 (GRCm39)		probably null	Het
Ryr2	C	T	13: 11,884,002 (GRCm39)		probably null	Het
Scara3	T	C	14: 66,168,417 (GRCm39)	N400S	probably damaging	Het
Slc8b1	T	A	5: 120,659,928 (GRCm39)		probably null	Het
Slco1a4	G	A	6: 141,765,205 (GRCm39)	Q346*	probably null	Het
Stk32b	A	G	5: 37,618,792 (GRCm39)	S229P	probably damaging	Het
Syde2	A	G	3: 145,704,508 (GRCm39)	R487G	probably benign	Het
Tbc1d2b	T	C	9: 90,104,355 (GRCm39)		probably benign	Het
Ticrr	T	C	7: 79,317,654 (GRCm39)	V396A	probably benign	Het
Trrap	T	C	5: 144,719,003 (GRCm39)		probably benign	Het
Vps13a	A	T	19: 16,646,054 (GRCm39)	H1994Q	probably damaging	Het
Wdr36	T	G	18: 32,997,802 (GRCm39)	V820G	possibly damaging	Het
Wdr83	G	A	8: 85,806,456 (GRCm39)	T114I	possibly damaging	Het
Zfc3h1	A	G	10: 115,252,658 (GRCm39)	K1324E	probably benign	Het

Other mutations in Gtf3c5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01817:Gtf3c5	APN	2	28,459,301 (GRCm39)	splice site	probably null
R0062:Gtf3c5	UTSW	2	28,462,198 (GRCm39)	splice site	probably benign
R0395:Gtf3c5	UTSW	2	28,467,930 (GRCm39)	missense	probably damaging	1.00
R0653:Gtf3c5	UTSW	2	28,468,008 (GRCm39)	missense	probably benign	0.34
R1232:Gtf3c5	UTSW	2	28,461,227 (GRCm39)	missense	probably damaging	1.00
R1828:Gtf3c5	UTSW	2	28,469,694 (GRCm39)	missense	probably damaging	1.00
R2174:Gtf3c5	UTSW	2	28,457,787 (GRCm39)	missense	probably benign	0.26
R3154:Gtf3c5	UTSW	2	28,469,548 (GRCm39)	missense	probably damaging	0.96
R4247:Gtf3c5	UTSW	2	28,461,196 (GRCm39)	missense	probably damaging	1.00
R4612:Gtf3c5	UTSW	2	28,469,596 (GRCm39)	missense	probably benign	0.00
R4673:Gtf3c5	UTSW	2	28,462,236 (GRCm39)	missense	probably benign	0.20
R5092:Gtf3c5	UTSW	2	28,472,885 (GRCm39)	missense	possibly damaging	0.58
R6009:Gtf3c5	UTSW	2	28,461,177 (GRCm39)	missense	probably benign	0.00
R6334:Gtf3c5	UTSW	2	28,460,474 (GRCm39)	missense	probably benign	0.00
R6808:Gtf3c5	UTSW	2	28,460,499 (GRCm39)	missense	probably damaging	0.98
R7490:Gtf3c5	UTSW	2	28,461,153 (GRCm39)	missense	probably damaging	1.00
R7544:Gtf3c5	UTSW	2	28,469,554 (GRCm39)	missense	possibly damaging	0.91
R7940:Gtf3c5	UTSW	2	28,458,592 (GRCm39)	missense	possibly damaging	0.91
R8003:Gtf3c5	UTSW	2	28,459,373 (GRCm39)	missense	probably benign	0.03
R8176:Gtf3c5	UTSW	2	28,460,429 (GRCm39)	critical splice donor site	probably null
R8319:Gtf3c5	UTSW	2	28,460,506 (GRCm39)	missense	probably benign	0.00
R9151:Gtf3c5	UTSW	2	28,463,577 (GRCm39)	missense	probably damaging	0.99

Posted On

2013-01-20