Incidental Mutation 'R1640:Larp1b'
ID 173434
Institutional Source Beutler Lab
Gene Symbol Larp1b
Ensembl Gene ENSMUSG00000025762
Gene Name La ribonucleoprotein 1B
Synonyms 4933421B21Rik, Larp2, 1700108L22Rik
MMRRC Submission 039676-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R1640 (G1)
Quality Score 225
Status Not validated
Chromosome 3
Chromosomal Location 40904263-40994669 bp(+) (GRCm39)
Type of Mutation start codon destroyed
DNA Base Change (assembly) T to A at 40988507 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Methionine to Lysine at position 1 (M1K)
Ref Sequence ENSEMBL: ENSMUSP00000026862 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000026862] [ENSMUST00000099121]
AlphaFold F6U5V1
Predicted Effect probably null
Transcript: ENSMUST00000026862
AA Change: M1K

PolyPhen 2 Score 0.041 (Sensitivity: 0.94; Specificity: 0.83)
SMART Domains Protein: ENSMUSP00000026862
Gene: ENSMUSG00000025762
AA Change: M1K

DomainStartEndE-ValueType
low complexity region 75 85 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000065411
SMART Domains Protein: ENSMUSP00000066664
Gene: ENSMUSG00000025762

DomainStartEndE-ValueType
Blast:DM15 31 65 1e-16 BLAST
low complexity region 119 129 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000099121
AA Change: D110E

PolyPhen 2 Score 0.944 (Sensitivity: 0.80; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000096721
Gene: ENSMUSG00000025762
AA Change: D110E

DomainStartEndE-ValueType
low complexity region 8 21 N/A INTRINSIC
DM15 52 93 6.61e-18 SMART
DM15 94 132 5.75e-18 SMART
DM15 133 167 2.82e-1 SMART
low complexity region 221 231 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000191882
Predicted Effect noncoding transcript
Transcript: ENSMUST00000192456
Predicted Effect noncoding transcript
Transcript: ENSMUST00000194006
Predicted Effect noncoding transcript
Transcript: ENSMUST00000199797
Predicted Effect noncoding transcript
Transcript: ENSMUST00000197214
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.3%
  • 10x: 96.1%
  • 20x: 92.2%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 81 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2810004N23Rik C A 8: 125,566,584 (GRCm39) V279L probably damaging Het
Acot6 A T 12: 84,147,900 (GRCm39) Y52F probably damaging Het
Adam22 C T 5: 8,195,689 (GRCm39) V284I probably damaging Het
Agl A T 3: 116,545,739 (GRCm39) H1352Q probably benign Het
Aldh18a1 G A 19: 40,573,943 (GRCm39) P27S probably benign Het
C1ra A G 6: 124,499,233 (GRCm39) N473S probably benign Het
C87436 T C 6: 86,423,233 (GRCm39) L269P probably damaging Het
Calcrl A G 2: 84,164,021 (GRCm39) V390A probably damaging Het
Ccp110 T G 7: 118,314,751 (GRCm39) probably null Het
Cerk A G 15: 86,033,601 (GRCm39) V274A probably damaging Het
Chd1l A T 3: 97,488,307 (GRCm39) S570T probably benign Het
Chst14 T A 2: 118,757,379 (GRCm39) W83R probably damaging Het
Chsy1 A T 7: 65,821,262 (GRCm39) D499V probably benign Het
Ckmt1 C A 2: 121,190,198 (GRCm39) probably null Het
Cnot1 A T 8: 96,496,460 (GRCm39) V282D probably damaging Het
Cntn3 A T 6: 102,218,974 (GRCm39) S549T possibly damaging Het
Cntnap5c A T 17: 58,702,289 (GRCm39) D1203V probably benign Het
Col4a4 A G 1: 82,513,491 (GRCm39) Y169H unknown Het
Cwc22 A G 2: 77,745,874 (GRCm39) F454S possibly damaging Het
Dab1 C T 4: 104,588,948 (GRCm39) A524V probably benign Het
Dhrs7 A T 12: 72,699,089 (GRCm39) W298R possibly damaging Het
Dock7 G T 4: 98,833,483 (GRCm39) T1906N probably damaging Het
Dpy19l3 T C 7: 35,449,203 (GRCm39) T67A probably benign Het
Drc1 A G 5: 30,521,301 (GRCm39) D654G possibly damaging Het
Ech1 A T 7: 28,531,264 (GRCm39) H284L probably damaging Het
Epc1 G A 18: 6,441,175 (GRCm39) Q8* probably null Het
Etv5 A T 16: 22,254,664 (GRCm39) D65E probably damaging Het
F2rl3 A G 8: 73,489,534 (GRCm39) R254G probably benign Het
Fabp5 T G 3: 10,080,170 (GRCm39) F73L probably benign Het
Fbrs T C 7: 127,086,483 (GRCm39) I611T probably damaging Het
Flnc T C 6: 29,433,806 (GRCm39) S117P possibly damaging Het
Frmd4b A C 6: 97,285,634 (GRCm39) S291A possibly damaging Het
Galnt13 A G 2: 54,950,558 (GRCm39) Y413C probably damaging Het
Gfer A G 17: 24,914,337 (GRCm39) Y109H possibly damaging Het
Gli2 T C 1: 118,764,254 (GRCm39) H1299R possibly damaging Het
Gm10110 T C 14: 90,135,679 (GRCm39) noncoding transcript Het
Gprc5a T G 6: 135,055,652 (GRCm39) L33W probably damaging Het
Grin3a T C 4: 49,844,721 (GRCm39) T121A probably benign Het
Grk3 A G 5: 113,163,248 (GRCm39) V33A probably benign Het
Hc A T 2: 34,947,336 (GRCm39) Y59* probably null Het
Hrnr A G 3: 93,239,823 (GRCm39) I3354V unknown Het
Hyou1 C G 9: 44,300,703 (GRCm39) T924S probably benign Het
Ifi209 T G 1: 173,464,931 (GRCm39) H20Q probably damaging Het
Ifi44 A G 3: 151,438,171 (GRCm39) V372A probably benign Het
Igdcc4 T A 9: 65,030,077 (GRCm39) L328H probably damaging Het
Jkampl A G 6: 73,445,869 (GRCm39) Y227H probably benign Het
Kif18a A G 2: 109,120,161 (GRCm39) T155A probably benign Het
Kmt2d A G 15: 98,742,938 (GRCm39) probably benign Het
Kri1 T C 9: 21,191,753 (GRCm39) D281G possibly damaging Het
Loxhd1 A G 18: 77,490,259 (GRCm39) D1225G probably damaging Het
Mzf1 A G 7: 12,777,197 (GRCm39) *736Q probably null Het
Naip2 C T 13: 100,298,489 (GRCm39) A516T possibly damaging Het
Ncf2 T A 1: 152,683,784 (GRCm39) M1K probably null Het
Or5t15 T A 2: 86,681,571 (GRCm39) H157L probably benign Het
Or8h10 A C 2: 86,808,963 (GRCm39) M59R probably damaging Het
Parp12 T C 6: 39,073,574 (GRCm39) D417G probably benign Het
Parp12 T C 6: 39,088,612 (GRCm39) H208R probably damaging Het
Pcif1 T C 2: 164,727,603 (GRCm39) I132T probably benign Het
Pck2 A G 14: 55,786,041 (GRCm39) D610G possibly damaging Het
Plbd1 T C 6: 136,617,123 (GRCm39) K185E probably benign Het
Ppp2r5a T C 1: 191,086,126 (GRCm39) M425V probably damaging Het
Rapgef6 T A 11: 54,548,231 (GRCm39) V805D probably damaging Het
Rprd2 C T 3: 95,671,059 (GRCm39) probably benign Het
Ryr3 A G 2: 112,731,178 (GRCm39) S711P probably damaging Het
Slc17a3 T A 13: 24,036,340 (GRCm39) L212* probably null Het
Slc4a8 A G 15: 100,681,668 (GRCm39) D41G probably benign Het
Slc9a3 T A 13: 74,306,937 (GRCm39) V354E probably damaging Het
Spen A G 4: 141,196,254 (GRCm39) I3632T probably damaging Het
Tesc A G 5: 118,192,914 (GRCm39) S77G probably benign Het
Tet3 A T 6: 83,346,297 (GRCm39) V1245D probably benign Het
Tox4 T A 14: 52,530,000 (GRCm39) D553E possibly damaging Het
Tpmt A T 13: 47,180,759 (GRCm39) Y193* probably null Het
Trio T C 15: 27,833,130 (GRCm39) Y1169C probably damaging Het
Urb1 G A 16: 90,569,514 (GRCm39) T1404I probably benign Het
Usp47 T C 7: 111,682,334 (GRCm39) S540P probably damaging Het
Vmn1r178 A T 7: 23,593,548 (GRCm39) M126L possibly damaging Het
Vmn1r223 T C 13: 23,434,348 (GRCm39) F314S probably damaging Het
Vmn2r112 A T 17: 22,824,097 (GRCm39) I451L probably benign Het
Zfc3h1 A G 10: 115,242,806 (GRCm39) probably null Het
Zfp503 A T 14: 22,034,969 (GRCm39) L649Q probably damaging Het
Zfp977 A C 7: 42,229,530 (GRCm39) C332G probably damaging Het
Other mutations in Larp1b
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01506:Larp1b APN 3 40,987,875 (GRCm39) nonsense probably null
IGL01636:Larp1b APN 3 40,924,913 (GRCm39) missense probably benign 0.35
IGL01845:Larp1b APN 3 40,924,960 (GRCm39) missense probably benign 0.03
IGL02192:Larp1b APN 3 40,921,929 (GRCm39) missense probably benign 0.01
IGL03372:Larp1b APN 3 40,978,962 (GRCm39) missense possibly damaging 0.79
R0396:Larp1b UTSW 3 40,924,996 (GRCm39) missense probably damaging 1.00
R0512:Larp1b UTSW 3 40,924,469 (GRCm39) missense probably benign 0.00
R0975:Larp1b UTSW 3 40,924,925 (GRCm39) missense probably damaging 0.99
R1119:Larp1b UTSW 3 40,987,963 (GRCm39) missense possibly damaging 0.87
R1337:Larp1b UTSW 3 40,987,837 (GRCm39) missense probably damaging 1.00
R1460:Larp1b UTSW 3 40,916,653 (GRCm39) missense probably benign
R1565:Larp1b UTSW 3 40,926,819 (GRCm39) missense probably damaging 1.00
R1589:Larp1b UTSW 3 40,987,909 (GRCm39) missense probably damaging 1.00
R1899:Larp1b UTSW 3 40,918,519 (GRCm39) missense probably benign 0.04
R2133:Larp1b UTSW 3 40,924,970 (GRCm39) missense possibly damaging 0.69
R3054:Larp1b UTSW 3 40,918,535 (GRCm39) missense probably benign 0.10
R4621:Larp1b UTSW 3 40,918,424 (GRCm39) missense possibly damaging 0.71
R4818:Larp1b UTSW 3 40,925,005 (GRCm39) missense probably damaging 1.00
R5023:Larp1b UTSW 3 40,988,420 (GRCm39) missense possibly damaging 0.88
R5166:Larp1b UTSW 3 40,918,487 (GRCm39) nonsense probably null
R5357:Larp1b UTSW 3 40,978,950 (GRCm39) missense probably benign 0.04
R5364:Larp1b UTSW 3 40,931,658 (GRCm39) missense probably damaging 0.99
R5492:Larp1b UTSW 3 40,924,334 (GRCm39) missense probably damaging 0.99
R5495:Larp1b UTSW 3 40,990,257 (GRCm39) missense probably damaging 1.00
R7070:Larp1b UTSW 3 40,931,086 (GRCm39) missense probably damaging 1.00
R7293:Larp1b UTSW 3 40,939,879 (GRCm39) missense
R7615:Larp1b UTSW 3 40,990,251 (GRCm39) missense probably benign 0.01
R7615:Larp1b UTSW 3 40,987,969 (GRCm39) missense possibly damaging 0.79
R7717:Larp1b UTSW 3 40,926,879 (GRCm39) missense probably damaging 0.97
R8060:Larp1b UTSW 3 40,939,837 (GRCm39) missense
R8282:Larp1b UTSW 3 40,991,245 (GRCm39) missense probably damaging 0.99
R8429:Larp1b UTSW 3 40,931,662 (GRCm39) makesense probably null
R8458:Larp1b UTSW 3 40,930,995 (GRCm39) missense probably benign 0.00
R9189:Larp1b UTSW 3 40,925,039 (GRCm39) missense probably damaging 1.00
R9468:Larp1b UTSW 3 40,930,990 (GRCm39) missense probably benign 0.00
R9628:Larp1b UTSW 3 40,916,103 (GRCm39) critical splice donor site probably null
X0021:Larp1b UTSW 3 40,921,929 (GRCm39) missense probably benign
Predicted Primers PCR Primer
(F):5'- TAAGTGGTAAGATGCCCGTGCTGTG -3'
(R):5'- GAAGGAAACCTTATGAAGGGCCTCG -3'

Sequencing Primer
(F):5'- GAACAGATTTCCGAGAATCTCAG -3'
(R):5'- CCAGACTACATGAAATTGTGCC -3'
Posted On 2014-04-24