Incidental Mutation 'R1642:Ablim3'
ID173646
Institutional Source Beutler Lab
Gene Symbol Ablim3
Ensembl Gene ENSMUSG00000032735
Gene Nameactin binding LIM protein family, member 3
SynonymsD930036B08Rik
MMRRC Submission 039678-MU
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.135) question?
Stock #R1642 (G1)
Quality Score225
Status Not validated
Chromosome18
Chromosomal Location61799395-61911852 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to C at 61814311 bp
ZygosityHeterozygous
Amino Acid Change Lysine to Arginine at position 457 (K457R)
Ref Sequence ENSEMBL: ENSMUSP00000125836 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000049378] [ENSMUST00000166783]
Predicted Effect probably benign
Transcript: ENSMUST00000049378
AA Change: K457R

PolyPhen 2 Score 0.264 (Sensitivity: 0.91; Specificity: 0.88)
SMART Domains Protein: ENSMUSP00000041243
Gene: ENSMUSG00000032735
AA Change: K457R

DomainStartEndE-ValueType
LIM 22 73 4.19e-8 SMART
LIM 81 133 2.31e-10 SMART
LIM 150 201 2.4e-17 SMART
LIM 209 261 1.12e-8 SMART
Pfam:AbLIM_anchor 273 646 6.5e-154 PFAM
VHP 647 682 1.66e-19 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000166783
AA Change: K457R

PolyPhen 2 Score 0.264 (Sensitivity: 0.91; Specificity: 0.88)
SMART Domains Protein: ENSMUSP00000125836
Gene: ENSMUSG00000032735
AA Change: K457R

DomainStartEndE-ValueType
LIM 22 73 4.19e-8 SMART
LIM 81 133 2.31e-10 SMART
LIM 150 201 2.4e-17 SMART
LIM 209 261 1.12e-8 SMART
Pfam:AbLIM_anchor 273 646 6.5e-154 PFAM
VHP 647 682 1.66e-19 SMART
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.1%
  • 10x: 95.4%
  • 20x: 89.7%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the actin-binding LIM (abLIM) family of proteins. These proteins are characterized by an N-terminal LIM domain and a C-terminal dematin-like domain. The encoded protein interacts with actin filaments and may be a component of adherens junctions in several cell types. A variant of this gene may be associated with pain sensitivity in male human patients. [provided by RefSeq, Sep 2016]
Allele List at MGI
Other mutations in this stock
Total: 67 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2310057J18Rik A G 10: 28,986,237 V19A probably benign Het
3632451O06Rik T C 14: 49,768,410 probably null Het
4931409K22Rik C A 5: 24,552,688 R177L probably damaging Het
6820408C15Rik T C 2: 152,440,854 Y210H probably damaging Het
Aars T A 8: 111,043,250 I327N possibly damaging Het
Abca6 T A 11: 110,218,281 N688Y possibly damaging Het
Acsm2 A T 7: 119,563,637 N45Y probably damaging Het
Agxt2 T C 15: 10,373,831 S108P probably damaging Het
Akr1cl A T 1: 65,021,429 M174K probably benign Het
Bfsp1 G A 2: 143,841,763 R214W probably damaging Het
Cby3 A G 11: 50,359,516 D183G probably damaging Het
Clip2 T C 5: 134,503,253 D566G possibly damaging Het
Colgalt1 A G 8: 71,620,757 I341V probably benign Het
Cyp2c38 T A 19: 39,401,709 D349V probably damaging Het
Cyp3a16 T A 5: 145,469,589 I18F unknown Het
Degs2 C T 12: 108,692,192 C176Y probably benign Het
Dhx16 A T 17: 35,891,065 T995S probably damaging Het
Dicer1 A T 12: 104,713,156 C521S probably damaging Het
Dopey2 T C 16: 93,762,315 S532P probably benign Het
Dpysl4 T G 7: 139,090,338 M124R probably damaging Het
Eml6 A G 11: 29,777,001 probably null Het
Erbb4 A T 1: 68,331,234 V395D probably damaging Het
Esf1 T C 2: 140,158,486 D460G possibly damaging Het
F830045P16Rik G A 2: 129,463,714 H247Y probably benign Het
Fsbp T A 4: 11,583,965 S221R probably benign Het
Fstl5 T A 3: 76,410,622 N198K possibly damaging Het
Gemin5 G T 11: 58,139,080 H855Q probably damaging Het
Gjd3 T C 11: 98,982,709 E103G probably benign Het
I0C0044D17Rik A G 4: 98,820,234 probably benign Het
Itgb4 A T 11: 116,007,357 R1646W probably damaging Het
Klri2 A T 6: 129,738,874 C121S probably benign Het
Lamc3 A G 2: 31,915,996 Y703C probably damaging Het
Lrrc10 A G 10: 117,045,883 N154S probably damaging Het
Lrriq1 A G 10: 103,214,456 F812L probably benign Het
Naip2 C T 13: 100,161,981 A516T possibly damaging Het
Nav1 T C 1: 135,452,272 Y1564C probably damaging Het
Ndufc1 T C 3: 51,408,243 T25A probably benign Het
Neurl4 A G 11: 69,903,659 M23V probably benign Het
Nnt A G 13: 119,404,550 probably null Het
Nolc1 G C 19: 46,079,022 probably null Het
Nrg1 A T 8: 31,824,508 M289K probably benign Het
Oas3 G T 5: 120,777,574 H17Q possibly damaging Het
Olfr1030 A G 2: 85,983,857 K6E probably benign Het
Olfr239 A G 17: 33,199,456 Y132C probably damaging Het
Olfr30 A G 11: 58,455,838 I37T probably benign Het
Olfr957 C T 9: 39,511,354 R122H possibly damaging Het
Parp9 T C 16: 35,967,697 Y612H probably benign Het
Pcdh1 A T 18: 38,199,230 M240K possibly damaging Het
Pcdhb9 A G 18: 37,400,934 probably benign Het
Plpp2 A G 10: 79,530,684 V42A probably damaging Het
Ppic C T 18: 53,407,062 V172M probably damaging Het
Ppp1r9b A G 11: 95,001,324 silent Het
Prop1 A G 11: 50,953,325 V27A possibly damaging Het
Psmc5 A G 11: 106,262,416 T295A probably benign Het
Rpa1 A G 11: 75,312,691 probably null Het
Rrp12 A G 19: 41,871,737 F1016L probably damaging Het
Scn2a A T 2: 65,683,697 I242F probably damaging Het
Slco1a6 T A 6: 142,086,434 H655L probably benign Het
Sp140 G A 1: 85,610,824 probably null Het
Syne1 A G 10: 5,348,694 I1071T possibly damaging Het
Tbc1d9b A G 11: 50,149,832 D392G probably damaging Het
Tcaim G A 9: 122,818,773 probably null Het
Tgm3 T A 2: 130,047,782 V632E probably damaging Het
Triobp C A 15: 79,002,148 R1830S probably damaging Het
Ttn A T 2: 76,811,243 L5176Q possibly damaging Het
Vps8 A G 16: 21,581,579 T1266A probably benign Het
Znfx1 T C 2: 167,039,010 I285V possibly damaging Het
Other mutations in Ablim3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00928:Ablim3 APN 18 61849406 missense possibly damaging 0.83
IGL00954:Ablim3 APN 18 61839685 splice site probably benign
IGL01012:Ablim3 APN 18 61839701 missense possibly damaging 0.91
IGL01402:Ablim3 APN 18 61871683 missense probably damaging 0.99
IGL01404:Ablim3 APN 18 61871683 missense probably damaging 0.99
IGL01609:Ablim3 APN 18 61822021 missense probably benign 0.05
IGL01710:Ablim3 APN 18 61871574 missense probably damaging 1.00
IGL01775:Ablim3 APN 18 61816918 splice site probably benign
IGL02967:Ablim3 APN 18 61826503 nonsense probably null
IGL03409:Ablim3 APN 18 61845851 missense probably damaging 1.00
R0143:Ablim3 UTSW 18 61855217 missense probably benign 0.20
R0601:Ablim3 UTSW 18 61849370 missense probably benign 0.19
R1067:Ablim3 UTSW 18 61823947 splice site probably benign
R1851:Ablim3 UTSW 18 61849395 missense probably benign 0.33
R1852:Ablim3 UTSW 18 61849395 missense probably benign 0.33
R2072:Ablim3 UTSW 18 61857088 missense possibly damaging 0.74
R2763:Ablim3 UTSW 18 61813544 nonsense probably null
R4865:Ablim3 UTSW 18 61805086 missense probably damaging 1.00
R5190:Ablim3 UTSW 18 61819911 missense probably benign 0.00
R5353:Ablim3 UTSW 18 61801399 missense probably damaging 1.00
R5442:Ablim3 UTSW 18 61857225 intron probably null
R5835:Ablim3 UTSW 18 61823922 missense probably damaging 1.00
R6547:Ablim3 UTSW 18 61823929 missense probably benign 0.01
R7231:Ablim3 UTSW 18 61805064 critical splice donor site probably null
R7386:Ablim3 UTSW 18 61821994 missense probably damaging 1.00
R7404:Ablim3 UTSW 18 61822028 missense probably damaging 0.99
R7529:Ablim3 UTSW 18 61821968 missense probably benign
X0028:Ablim3 UTSW 18 61805112 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AATCTCAGTGATAGCCCCTCCCAG -3'
(R):5'- GAAGAAGCCCAAGTCGAGTTAGTCC -3'

Sequencing Primer
(F):5'- CCCAGCATTCTCTGTGAAGTG -3'
(R):5'- ctctttcccttctcttccctc -3'
Posted On2014-04-24