Mutagenetix > Incidental Mutation

Incidental Mutation 'R1646:Stpg2'

173866

Institutional Source

Beutler Lab

Gene Symbol

Stpg2

Ensembl Gene

ENSMUSG00000047940

Gene Name

sperm tail PG rich repeat containing 2

Synonyms

LOC381476, B930007M17Rik

MMRRC Submission

039682-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.050) question?

Stock #

R1646 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

138910953-139415185 bp(+) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

T to A at 139125463 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000101846 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000062306] [ENSMUST00000106239]

AlphaFold

Q8C8J0

Predicted Effect

probably benign
Transcript: ENSMUST00000062306

SMART Domains

Protein: ENSMUSP00000051539
Gene: ENSMUSG00000047940

Domain	Start	End	E-Value	Type
Pfam:SHIPPO-rpt	20	50	1.1e1	PFAM
Pfam:SHIPPO-rpt	62	92	1.3e1	PFAM
Pfam:SHIPPO-rpt	97	127	9.1e1	PFAM
Pfam:SHIPPO-rpt	162	193	1.3e2	PFAM
Pfam:SHIPPO-rpt	200	235	1.7e0	PFAM
Pfam:SHIPPO-rpt	249	285	1.2e-2	PFAM
Pfam:SHIPPO-rpt	292	315	3.2e1	PFAM
Pfam:SHIPPO-rpt	334	371	2.1e0	PFAM
Pfam:SHIPPO-rpt	421	462	3.8e0	PFAM
Pfam:SHIPPO-rpt	471	497	2.9e1	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000083741

Predicted Effect

probably benign
Transcript: ENSMUST00000106239

SMART Domains

Protein: ENSMUSP00000101846
Gene: ENSMUSG00000047940

Domain	Start	End	E-Value	Type
Pfam:SHIPPO-rpt	200	220	6.9e-1	PFAM
Pfam:SHIPPO-rpt	249	285	8.8e-2	PFAM
Pfam:SHIPPO-rpt	334	371	5.4e-2	PFAM

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.1%
20x: 91.8%

Validation Efficiency

96% (69/72)

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Akna	T	G	4: 63,302,129 (GRCm39)	I581L	probably benign	Het
Cacnb4	A	G	2: 52,364,912 (GRCm39)	I117T	possibly damaging	Het
Capn1	A	T	19: 6,047,760 (GRCm39)	F434L	probably benign	Het
Cbs	T	C	17: 31,832,169 (GRCm39)	T547A	probably benign	Het
Col6a5	A	T	9: 105,739,948 (GRCm39)	L2557*	probably null	Het
Dach1	A	G	14: 98,406,550 (GRCm39)	S66P	unknown	Het
Ddx31	T	C	2: 28,782,532 (GRCm39)	V625A	probably benign	Het
Dmxl1	T	G	18: 50,095,328 (GRCm39)	V2969G	probably damaging	Het
Eapp	T	A	12: 54,732,745 (GRCm39)	K122*	probably null	Het
Elapor1	A	T	3: 108,370,306 (GRCm39)	S751T	probably damaging	Het
Epb41l5	G	T	1: 119,477,752 (GRCm39)		probably benign	Het
Fat1	T	C	8: 45,471,079 (GRCm39)	S1628P	probably damaging	Het
Fgfr2	T	A	7: 129,844,374 (GRCm39)	E37V	probably damaging	Het
Fgfr4	A	T	13: 55,313,777 (GRCm39)	N529Y	probably damaging	Het
Fsip2	A	T	2: 82,808,861 (GRCm39)	T1727S	probably benign	Het
Gak	A	T	5: 108,750,720 (GRCm39)	S397T	probably damaging	Het
Gm6040	T	A	8: 21,407,113 (GRCm39)	I36F	possibly damaging	Het
Grhl1	A	G	12: 24,661,860 (GRCm39)	D513G	possibly damaging	Het
Gstt1	T	A	10: 75,619,940 (GRCm39)	D219V	possibly damaging	Het
Hcfc2	T	G	10: 82,536,861 (GRCm39)	V91G	probably damaging	Het
Hells	A	T	19: 38,956,227 (GRCm39)	I808L	probably benign	Het
Icmt	T	A	4: 152,384,172 (GRCm39)	V110E	possibly damaging	Het
Ilrun	A	G	17: 28,012,934 (GRCm39)	S88P	probably damaging	Het
Iqca1	C	T	1: 90,067,760 (GRCm39)	V164M	probably damaging	Het
Klri1	G	A	6: 129,680,299 (GRCm39)	P119S	probably benign	Het
Krt71	C	A	15: 101,647,199 (GRCm39)		probably null	Het
Lpin1	A	G	12: 16,623,659 (GRCm39)		probably null	Het
Macir	A	T	1: 97,573,531 (GRCm39)	I178N	probably damaging	Het
Metap2	T	C	10: 93,706,059 (GRCm39)	H241R	probably damaging	Het
Myh15	A	G	16: 49,015,931 (GRCm39)	Y1869C	probably damaging	Het
Myo1h	G	A	5: 114,455,693 (GRCm39)	G59E	possibly damaging	Het
Ncam2	T	G	16: 81,262,594 (GRCm39)		probably benign	Het
Npat	T	C	9: 53,466,434 (GRCm39)	V241A	probably benign	Het
Npbwr1	C	A	1: 5,987,473 (GRCm39)	V14L	probably benign	Het
Nup37	T	A	10: 88,014,096 (GRCm39)	V323E	possibly damaging	Het
Or11g27	A	T	14: 50,771,040 (GRCm39)	Q57L	probably benign	Het
Or5m9b	A	G	2: 85,905,960 (GRCm39)	N292S	probably damaging	Het
Or5p59	C	T	7: 107,702,798 (GRCm39)	T94I	probably benign	Het
Or7a35	C	A	10: 78,853,340 (GRCm39)	Y61*	probably null	Het
Pdlim4	A	T	11: 53,947,080 (GRCm39)	L132Q	possibly damaging	Het
Ptcd3	T	C	6: 71,875,379 (GRCm39)	D201G	probably benign	Het
Ptk7	A	T	17: 46,897,223 (GRCm39)	F370I	probably benign	Het
Pus7l	T	C	15: 94,431,517 (GRCm39)	N371D	probably benign	Het
Pzp	G	A	6: 128,480,518 (GRCm39)	A589V	probably benign	Het
Rasef	T	A	4: 73,652,786 (GRCm39)	R572W	probably damaging	Het
Reep5	T	C	18: 34,482,712 (GRCm39)	T166A	probably benign	Het
Rhov	A	G	2: 119,101,501 (GRCm39)	V35A	probably damaging	Het
Ripk4	C	T	16: 97,545,097 (GRCm39)	G517R	probably damaging	Het
Rnasel	A	G	1: 153,630,800 (GRCm39)	T439A	probably damaging	Het
Slamf9	A	G	1: 172,304,907 (GRCm39)	T174A	probably benign	Het
Slc12a9	A	G	5: 137,321,411 (GRCm39)	L414P	probably damaging	Het
Slf1	G	A	13: 77,214,767 (GRCm39)	R640*	probably null	Het
Slfn8	G	T	11: 82,907,712 (GRCm39)	P277Q	probably damaging	Het
Tm9sf3	A	C	19: 41,211,618 (GRCm39)	N408K	possibly damaging	Het
Trio	A	G	15: 27,758,433 (GRCm39)	V2049A	possibly damaging	Het
Ttn	A	T	2: 76,645,077 (GRCm39)	I11180N	probably damaging	Het
Ush2a	T	C	1: 188,148,018 (GRCm39)	C982R	probably damaging	Het
Usp36	C	T	11: 118,164,392 (GRCm39)	V207M	probably damaging	Het
Uvrag	T	C	7: 98,767,431 (GRCm39)	T67A	probably damaging	Het
Vasp	G	A	7: 18,994,903 (GRCm39)		probably benign	Het
Vmn2r115	T	C	17: 23,578,513 (GRCm39)	F662S	probably damaging	Het
Vmn2r54	A	T	7: 12,366,434 (GRCm39)	C167S	probably damaging	Het
Vmn2r71	C	A	7: 85,270,476 (GRCm39)	N547K	probably damaging	Het
Wasf2	A	G	4: 132,903,902 (GRCm39)	I37V	probably benign	Het
Wwc2	T	C	8: 48,295,937 (GRCm39)	E1111G	unknown	Het
Zfp317	A	G	9: 19,558,608 (GRCm39)	Y274C	probably damaging	Het
Zhx3	T	C	2: 160,623,195 (GRCm39)	Y324C	probably damaging	Het
Zzef1	T	C	11: 72,754,862 (GRCm39)		probably null	Het

Other mutations in Stpg2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01346:Stpg2	APN	3	139,125,635 (GRCm39)	splice site	probably benign
IGL01505:Stpg2	APN	3	139,023,214 (GRCm39)	missense	probably benign	0.02
IGL01649:Stpg2	APN	3	139,125,623 (GRCm39)	missense	probably damaging	1.00
IGL03264:Stpg2	APN	3	139,014,970 (GRCm39)	missense	possibly damaging	0.72
PIT4687001:Stpg2	UTSW	3	138,921,026 (GRCm39)	missense	possibly damaging	0.89
R0053:Stpg2	UTSW	3	138,918,082 (GRCm39)	missense	probably benign	0.00
R0099:Stpg2	UTSW	3	138,948,954 (GRCm39)	splice site	probably benign
R0417:Stpg2	UTSW	3	138,924,082 (GRCm39)	missense	probably damaging	1.00
R1719:Stpg2	UTSW	3	138,937,960 (GRCm39)	missense	probably benign	0.11
R1791:Stpg2	UTSW	3	139,023,162 (GRCm39)	missense	probably benign	0.00
R1799:Stpg2	UTSW	3	139,125,542 (GRCm39)	missense	probably damaging	1.00
R1912:Stpg2	UTSW	3	139,228,742 (GRCm39)	splice site	probably null
R1974:Stpg2	UTSW	3	139,014,944 (GRCm39)	nonsense	probably null
R3725:Stpg2	UTSW	3	139,023,238 (GRCm39)	missense	probably benign	0.00
R3727:Stpg2	UTSW	3	139,004,257 (GRCm39)	missense	probably damaging	1.00
R4225:Stpg2	UTSW	3	138,921,053 (GRCm39)	missense	probably damaging	0.97
R4694:Stpg2	UTSW	3	139,023,177 (GRCm39)	missense	possibly damaging	0.94
R4698:Stpg2	UTSW	3	139,014,990 (GRCm39)	missense	probably damaging	1.00
R4879:Stpg2	UTSW	3	138,921,134 (GRCm39)	missense	probably benign	0.03
R5236:Stpg2	UTSW	3	138,937,984 (GRCm39)	missense	probably damaging	1.00
R5476:Stpg2	UTSW	3	138,948,899 (GRCm39)	missense	probably benign	0.03
R5567:Stpg2	UTSW	3	139,125,547 (GRCm39)	missense	probably benign	0.22
R6297:Stpg2	UTSW	3	139,407,432 (GRCm39)	missense	possibly damaging	0.91
R6692:Stpg2	UTSW	3	139,228,738 (GRCm39)	critical splice donor site	probably null
R7113:Stpg2	UTSW	3	139,407,535 (GRCm39)	critical splice donor site	probably null
R7154:Stpg2	UTSW	3	138,921,056 (GRCm39)	missense	probably benign	0.44
R7553:Stpg2	UTSW	3	138,924,098 (GRCm39)	missense	probably damaging	1.00
R7660:Stpg2	UTSW	3	139,407,458 (GRCm39)	missense	probably damaging	0.98
R8105:Stpg2	UTSW	3	138,948,925 (GRCm39)	missense	probably damaging	1.00
R8154:Stpg2	UTSW	3	139,014,938 (GRCm39)	missense	probably damaging	1.00
R8902:Stpg2	UTSW	3	139,004,170 (GRCm39)	missense	probably damaging	1.00
R9165:Stpg2	UTSW	3	139,014,993 (GRCm39)	missense	possibly damaging	0.57
RF021:Stpg2	UTSW	3	138,918,011 (GRCm39)	critical splice acceptor site	probably null
X0009:Stpg2	UTSW	3	139,004,223 (GRCm39)	missense	probably benign	0.00
X0018:Stpg2	UTSW	3	138,948,851 (GRCm39)	missense	probably benign	0.44
Z1176:Stpg2	UTSW	3	139,407,401 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- ATGAACATCTCACCAATGTAGTGAGGC -3'
(R):5'- TGCTCACAAGGAACATGTAACTTCCC -3'

Sequencing Primer
(F):5'- GGCCTACTCTTTAAAATATCCAGAC -3'
(R):5'- TGTAACTTCCCACAGCCTCAG -3'

Posted On

2014-04-24