Mutagenetix > Incidental Mutation

Incidental Mutation 'R1649:Olfm4'

174126

Institutional Source

Beutler Lab

Gene Symbol

Olfm4

Ensembl Gene

ENSMUSG00000022026

Gene Name

olfactomedin 4

Synonyms

GC1, OlfD, pPD4, LOC380924, LOC239192, GW112

MMRRC Submission

039685-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.090) question?

Stock #

R1649 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

80237742-80260581 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 80249422 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Lysine at position 180 (E180K)

Ref Sequence

ENSEMBL: ENSMUSP00000086112 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000088735] [ENSMUST00000228749]

AlphaFold

Q3UZZ4

Predicted Effect

probably damaging
Transcript: ENSMUST00000088735
AA Change: E180K

PolyPhen 2 Score 0.978 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000086112
Gene: ENSMUSG00000022026
AA Change: E180K

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
low complexity region	32	43	N/A	INTRINSIC
low complexity region	225	243	N/A	INTRINSIC
OLF	274	532	8.53e-72	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000226541

Predicted Effect

possibly damaging
Transcript: ENSMUST00000228749
AA Change: E180K

PolyPhen 2 Score 0.953 (Sensitivity: 0.79; Specificity: 0.95)

Coding Region Coverage

1x: 98.9%
3x: 98.0%
10x: 95.0%
20x: 88.1%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene was originally cloned from human myeloblasts and found to be selectively expressed in inflammed colonic epithelium. This gene encodes a member of the olfactomedin family. The encoded protein is an antiapoptotic factor that promotes tumor growth and is an extracellular matrix glycoprotein that facilitates cell adhesion. [provided by RefSeq, Mar 2011]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit reduced colonization of the gastric mucosa by Helicobacter pylori but increased inflammatory response to H. pylori infection. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Akr1a1	T	A	4: 116,495,217 (GRCm39)	I261F	probably damaging	Het
Aldh1l1	T	C	6: 90,541,371 (GRCm39)	V255A	probably benign	Het
Ambn	T	A	5: 88,612,340 (GRCm39)	M172K	probably benign	Het
Arhgef18	A	G	8: 3,439,094 (GRCm39)		probably benign	Het
BC034090	T	C	1: 155,101,319 (GRCm39)	H315R	possibly damaging	Het
Btaf1	T	A	19: 36,959,122 (GRCm39)	D707E	probably benign	Het
C6	T	C	15: 4,764,739 (GRCm39)	L145P	possibly damaging	Het
Cav3	T	A	6: 112,449,207 (GRCm39)	L75Q	probably damaging	Het
Cavin2	T	A	1: 51,339,939 (GRCm39)	D205E	probably benign	Het
Cdadc1	T	C	14: 59,811,242 (GRCm39)	T423A	probably damaging	Het
Cep120	A	T	18: 53,857,648 (GRCm39)	H272Q	probably damaging	Het
Chd9	A	T	8: 91,659,229 (GRCm39)	Q63L	possibly damaging	Het
Clspn	T	C	4: 126,460,228 (GRCm39)		probably benign	Het
Cramp1	G	T	17: 25,202,217 (GRCm39)	H422N	probably damaging	Het
Csn1s2b	A	T	5: 87,966,943 (GRCm39)	M71L	probably benign	Het
D630045J12Rik	C	A	6: 38,158,366 (GRCm39)	A1104S	probably damaging	Het
D930048N14Rik	A	G	11: 51,545,663 (GRCm39)		probably benign	Het
Ern2	G	A	7: 121,776,623 (GRCm39)	P366S	probably damaging	Het
Gm1527	T	C	3: 28,952,880 (GRCm39)	I60T	probably damaging	Het
Gse1	T	C	8: 121,305,254 (GRCm39)		probably benign	Het
Ildr1	T	C	16: 36,528,681 (GRCm39)	L42P	probably damaging	Het
Itih2	G	A	2: 10,110,546 (GRCm39)	T515I	probably benign	Het
Jcad	C	A	18: 4,673,309 (GRCm39)	P357Q	probably damaging	Het
Kitl	A	G	10: 99,899,976 (GRCm39)	T94A	probably benign	Het
Klri1	C	T	6: 129,675,204 (GRCm39)	M185I	probably benign	Het
Lsamp	A	T	16: 41,775,661 (GRCm39)	M171L	probably benign	Het
Macf1	T	G	4: 123,377,846 (GRCm39)	I1460L	probably damaging	Het
Map1b	C	G	13: 99,652,986 (GRCm39)	V4L	probably benign	Het
Mboat7	A	T	7: 3,688,817 (GRCm39)	V237D	probably benign	Het
Mctp2	A	T	7: 71,811,006 (GRCm39)	I656K	probably damaging	Het
Ms4a6b	A	G	19: 11,497,806 (GRCm39)	D35G	possibly damaging	Het
Nipsnap2	T	A	5: 129,830,301 (GRCm39)	I205N	probably damaging	Het
Nsd2	T	C	5: 34,011,984 (GRCm39)	V264A	probably damaging	Het
Oacyl	C	T	18: 65,883,167 (GRCm39)	T582I	probably damaging	Het
Olfm1	A	T	2: 28,119,279 (GRCm39)	T333S	possibly damaging	Het
Or14j6	T	C	17: 38,215,060 (GRCm39)	F208L	probably benign	Het
Or2ad1	A	T	13: 21,326,912 (GRCm39)	L105Q	probably damaging	Het
Or8g17	T	G	9: 38,930,776 (GRCm39)	Q20H	probably benign	Het
Parp4	T	A	14: 56,827,885 (GRCm39)	V212E	possibly damaging	Het
Pcdhb21	T	A	18: 37,648,666 (GRCm39)	N598K	probably damaging	Het
Piezo2	C	A	18: 63,250,743 (GRCm39)	W452L	probably benign	Het
Plec	C	A	15: 76,090,011 (GRCm39)	A110S	possibly damaging	Het
Popdc3	T	C	10: 45,191,320 (GRCm39)	Y144H	probably damaging	Het
Ptgdr	T	C	14: 45,095,959 (GRCm39)	H251R	probably benign	Het
Ptpro	T	A	6: 137,421,015 (GRCm39)	Y246*	probably null	Het
Pyroxd2	T	C	19: 42,726,573 (GRCm39)	D247G	probably damaging	Het
Robo2	T	C	16: 73,695,889 (GRCm39)	E1418G	probably benign	Het
Rtp3	T	C	9: 110,815,772 (GRCm39)	T198A	probably benign	Het
Sec16a	A	T	2: 26,315,536 (GRCm39)	V1767D	probably damaging	Het
Septin14	T	C	5: 129,774,819 (GRCm39)	N119D	probably benign	Het
Serpina5	A	T	12: 104,071,484 (GRCm39)	T364S	possibly damaging	Het
Setd2	A	G	9: 110,378,932 (GRCm39)	S632G	probably benign	Het
Sh3bp2	C	T	5: 34,716,348 (GRCm39)	A253V	possibly damaging	Het
Slc6a5	G	T	7: 49,586,010 (GRCm39)	G443C	probably damaging	Het
Spag9	T	A	11: 93,999,278 (GRCm39)		probably null	Het
Sptbn1	T	C	11: 30,087,301 (GRCm39)	E1033G	probably damaging	Het
Timm17a	T	G	1: 135,237,540 (GRCm39)	Q39P	probably damaging	Het
Tmem26	A	T	10: 68,587,103 (GRCm39)	T184S	probably damaging	Het
Tpi1	A	T	6: 124,789,891 (GRCm39)		probably null	Het
Tssk5	T	C	15: 76,258,003 (GRCm39)	Y118C	possibly damaging	Het
Ttll4	T	A	1: 74,736,629 (GRCm39)	L1118Q	possibly damaging	Het
Ttll5	T	A	12: 85,969,788 (GRCm39)	L691Q	probably damaging	Het
Vmn1r49	A	T	6: 90,049,623 (GRCm39)	H126Q	possibly damaging	Het
Zfp518b	A	T	5: 38,829,224 (GRCm39)	V927E	probably damaging	Het
Zfp618	T	C	4: 63,013,774 (GRCm39)	F213S	probably damaging	Het
Zfp759	T	A	13: 67,287,668 (GRCm39)	N406K	probably benign	Het

Other mutations in Olfm4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00532:Olfm4	APN	14	80,258,583 (GRCm39)	missense	probably benign	0.12
IGL01108:Olfm4	APN	14	80,259,339 (GRCm39)	missense	probably benign	0.15
IGL01599:Olfm4	APN	14	80,258,750 (GRCm39)	missense	probably damaging	1.00
IGL01872:Olfm4	APN	14	80,259,368 (GRCm39)	makesense	probably null
IGL01928:Olfm4	APN	14	80,249,392 (GRCm39)	missense	possibly damaging	0.71
IGL02333:Olfm4	APN	14	80,259,210 (GRCm39)	missense	probably damaging	1.00
IGL02336:Olfm4	APN	14	80,243,761 (GRCm39)	missense	probably damaging	1.00
IGL02811:Olfm4	APN	14	80,259,113 (GRCm39)	missense	probably damaging	1.00
PIT4651001:Olfm4	UTSW	14	80,258,925 (GRCm39)	missense	probably benign	0.00
R1428:Olfm4	UTSW	14	80,258,843 (GRCm39)	missense	probably damaging	1.00
R2139:Olfm4	UTSW	14	80,251,755 (GRCm39)	missense	probably benign	0.00
R2270:Olfm4	UTSW	14	80,249,315 (GRCm39)	missense	probably damaging	0.96
R2401:Olfm4	UTSW	14	80,259,192 (GRCm39)	missense	probably damaging	1.00
R4527:Olfm4	UTSW	14	80,258,664 (GRCm39)	missense	probably benign	0.13
R4649:Olfm4	UTSW	14	80,258,747 (GRCm39)	missense	probably benign	0.00
R5232:Olfm4	UTSW	14	80,259,122 (GRCm39)	missense	probably damaging	1.00
R5512:Olfm4	UTSW	14	80,258,787 (GRCm39)	missense	probably benign	0.32
R6198:Olfm4	UTSW	14	80,237,813 (GRCm39)	missense	probably benign	0.18
R6642:Olfm4	UTSW	14	80,259,107 (GRCm39)	missense	probably damaging	1.00
R6828:Olfm4	UTSW	14	80,258,973 (GRCm39)	missense	probably damaging	1.00
R6916:Olfm4	UTSW	14	80,251,638 (GRCm39)	missense	probably damaging	0.97
R6960:Olfm4	UTSW	14	80,258,754 (GRCm39)	missense	probably damaging	0.97
R7329:Olfm4	UTSW	14	80,249,369 (GRCm39)	missense	possibly damaging	0.79
R7971:Olfm4	UTSW	14	80,259,240 (GRCm39)	missense	probably damaging	0.98
R8872:Olfm4	UTSW	14	80,258,943 (GRCm39)	missense	probably damaging	1.00
R9008:Olfm4	UTSW	14	80,255,607 (GRCm39)	missense	unknown
R9398:Olfm4	UTSW	14	80,249,249 (GRCm39)	missense	probably benign	0.12
R9599:Olfm4	UTSW	14	80,243,747 (GRCm39)	missense	probably damaging	1.00
R9600:Olfm4	UTSW	14	80,243,747 (GRCm39)	missense	probably damaging	1.00
R9784:Olfm4	UTSW	14	80,249,348 (GRCm39)	missense	probably damaging	0.99
Z1176:Olfm4	UTSW	14	80,258,659 (GRCm39)	missense	probably benign	0.39
Z1177:Olfm4	UTSW	14	80,237,892 (GRCm39)	missense	probably benign	0.40

Predicted Primers

PCR Primer
(F):5'- TGAGAAGAGGCTCCTGAACCTGAC -3'
(R):5'- ACCTCATGGTCCTGAGACAGTAGC -3'

Sequencing Primer
(F):5'- AACCTGACGGTCCGAGTAG -3'
(R):5'- tgtttgtttgtttgtttgtttgtttg -3'

Posted On

2014-04-24